Basic Information

Insect: Pammene aurita
Gene Symbol: ham
Assembly: GCA_947086415.1
Location: OX352308.1:12872728-12917060[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.41 45 6.2 0.0 2 23 255 277 255 277 0.93

2 9 0.0017 0.19 13.6 0.7 1 23 284 307 284 307 0.93

3 9 2.6e-08 2.9e-06 28.8 0.1 1 23 313 336 313 336 0.96

4 9 2.3e-06 0.00025 22.7 1.7 1 23 342 364 342 364 0.95

5 9 6.7e-05 0.0074 18.1 7.1 1 23 370 392 370 392 0.99

6 9 0.002 0.22 13.4 0.4 2 21 400 419 399 420 0.94

7 9 1.9e-08 2.1e-06 29.2 0.7 1 23 822 844 822 844 0.98

8 9 6.9e-07 7.7e-05 24.3 1.7 1 23 850 873 850 873 0.97

9 9 7.6e-06 0.00084 21.1 3.3 1 23 879 901 879 901 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.41	45	6.2	0.0	2	23	255	277	255	277	0.93
2	9	0.0017	0.19	13.6	0.7	1	23	284	307	284	307	0.93
3	9	2.6e-08	2.9e-06	28.8	0.1	1	23	313	336	313	336	0.96
4	9	2.3e-06	0.00025	22.7	1.7	1	23	342	364	342	364	0.95
5	9	6.7e-05	0.0074	18.1	7.1	1	23	370	392	370	392	0.99
6	9	0.002	0.22	13.4	0.4	2	21	400	419	399	420	0.94
7	9	1.9e-08	2.1e-06	29.2	0.7	1	23	822	844	822	844	0.98
8	9	6.9e-07	7.7e-05	24.3	1.7	1	23	850	873	850	873	0.97
9	9	7.6e-06	0.00084	21.1	3.3	1	23	879	901	879	901	0.98

Sequence Information

Coding Sequence: ATGTTGTTTATTTTGTCCACAGCAGGCGACAGCCAGGAGTCAGGCAGCCCACCGCCGAGTCCGACTGACTCTGCGACATCCGAATCTCCGCCCACCTTAGTTTACATCAAACAAGAAACCATGCCTCCCTGCGGAGACATTAAGGACTATTATAGCACACTCGATTGTCGCTTATCTGACACCTATCTATCGCCAAACTTCTCAGAATTCGGACGTGGATATCTACCCGGCAATTTGGAACTACCGAGGTACGACTCCAAATACTCGAGAGAAAAAGAGAAAGGCGGGAAAAATTACGATAATGTCGATAGTGAGTTGAATTTACCGATAGAACTGGTTATAAAGAATGGCGGAGTGTTCGCTAGAGTCAATATTCCGAGTGGCACGAAGTACGGACCTTTCATTGGGAAGTGGACGACGGAGTCAGAACCGCTGGATACGAGATACGCTTGGGAGGTCCTCGGCAAGAACGGCATCCGCGGCTGGCTGGACGGCACCACGGAGAAGTCCAACTGGCTGAAGCTGGTGCGCTCCACCAACTACCCTCAGGACGTCAACGTCCAGCATCTACTGTTGGCGGGCCAAGTCTGGTATAAGGTGACGCGAGACATCGCCTCCGGACAGGAGCTCCTCCTCGGCCCTCGGACACCTCTACCGCTACAAGATGTACAAGCTGCTGCCGATCGGCAAACGTCCAGTGTCAACCCACCAGGGGTGTCCCTGCCACTCAACGAAGACGAAGACCGGGAGGACACCGAACCACGTTGCTCCTTCTGCGACGCGCCGTTCCCTAACATTGACGTTCTCGACCGCCACCTGATCCAGGTGCACGCGCAACCGGCCGCGGCGTTCCACTGCGAGCTCTGCAATCGCGCGTACAGCACCCGGCCGCTGCTGCTGCGGCACCGAGCGCTCGCGCACACTGATATCAGGAAATATCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGCCGGCGCGCGCAGCCACGCGTGCCCGGAGTGCGGGAAGACGTTCGCCACCTCCTCAGGCCTAAAGCAGCACACGCACATACACTCCAGCGTCAAGCCGTTCCAGTGCAAGGTGTGCTTTAAGTCCTACACGCAGTTTTCCAACTTGTGCCGACACAAGCGGATGCATATCGCCTGCAGAGCCCTAGTCGAGTGCGGGAAATGCGGCAACTCCTTCAACTCTTACGCTTCTCTTACTAAACACAAGAGATTCTGTGACACTGCTAGCAGCGCCAACGTTGGGATGAGAGGACAGATGCCGCAAGGACTACCACAAATGCCGTCCCTGCCCAACCTCGGAATGAATACCCCTGGGAATCCAAATCCGTTCCCTATGTATAGGGGACCAACTTTGCCGCTTCCATATAACACTTTTGCCCAGTACCCAGGCTTATTCTCTGCAGCCGCTGCTGCTTGCCCTCCAGAGTTCTTAAACCCGCTGCTCTTCAATGTTCAAGGAGCAAGACTTGCCATGGAGCATGACTTTGCTTTAACAAACGCTAGTTTACTGTCAAAACATCAAGAAGGACGAATGTCTGTTAAAAGTGTGGACAGTTCAAATTCACTTGATGATATAATGAAGAAGAATAAGGATTTGGATTATGAATCCATAAAACGCGAAAGCGATACAGGTGATAGAACTACGCCTAATAAATTGCACGGTCTAACAGTAAAACAATCACCTCCCTCAGTCGAGGAAGTTCCAACCCAGCAACGCCCATCACCTGTCTTGAGCATGTCAACGCCTATGAATCCGTTTAACTTTGCAAGAGACGATATGAAACATCGGAGATCACCATTCAATTTTTCACTGAAGGTCAATAACAATACCATTCAGGGAAATAAGTCTCATTCTCCATTTCCAACAGATTTGTCTAAAAATGACGCAAATGATGACGAAAAGAATTCCGAGTACTCTGATTCCGAAGTAGAAGTAAAGAAGGACGAAGGTGACCAGCCTCTGGATTTGTCTGTTTCCCGTAAGCATAGCGATAAAGATTCCGAAGCAGACATCGACGATCGTTCCTTTCGAAACTCATCTGTTAAATCATATTCGCCTCCGGAAAGTCCAATGGAGCGTGAGAGCAAAACTCCTGAAAACGACACAGCGGATATAGACGTTGAAGGAGTAGAGCCCAAACGAGAAGATACGCCTCCTCAATTGGTATCGCCACCACTAGCGTTCCCGATGCCCGTGCACCCTCAGCACAACAGCAGCCTCCTCGAAGCCATGTATCGCCCCAGATTTCCGTCCTTCCATTCAGCATCTGACTCAATTCTGAACTCTTCGCCCTACGTACCAACCCCGTTTAATTTTTTATCCCCACTCCTCGGTACGGATGGCCCCGATAGGCAACCAAGCGCCTATGCAAAATTTCGCGAACTTAGCGCTGGTTCGGGGAAGCTTCGTGACCGCTATGCTTGCAAGTTTTGCGGGAAAGTATTTCCTCGTAGCGCGAACCTGACGCGCCACCTCCGCACCCACACTGGGGAGCAGCCCTACAAATGTAAGTACTGCGAGCGTTCCTTCTCGATCTCGTCCAACTTACAGCGACACGTGAGAAACATACACAACAAAGAGAGACCATTCAGATGTCCATTGTGCGATAGGTGTTTCGGGCAGCAAACGAACCTGGACCGGCACCTAAAGAAACACGAAGCTGAGGGCGGGGACTCTCCAAGCTCGGCAGATACAGAACGTGAGGACGCGTACTTTGATGACATACGCTCTTTCATGGGCAAGGTGACATGTTCGCCGGGTGCGCGCTCGCCGCCTGCTTCATCACCTCATGCGCCACACGCGCCACACCGCCCCTCTGTGCTCGCCATCTCTACATAG
Protein Sequence: MLFILSTAGDSQESGSPPPSPTDSATSESPPTLVYIKQETMPPCGDIKDYYSTLDCRLSDTYLSPNFSEFGRGYLPGNLELPRYDSKYSREKEKGGKNYDNVDSELNLPIELVIKNGGVFARVNIPSGTKYGPFIGKWTTESEPLDTRYAWEVLGKNGIRGWLDGTTEKSNWLKLVRSTNYPQDVNVQHLLLAGQVWYKVTRDIASGQELLLGPRTPLPLQDVQAAADRQTSSVNPPGVSLPLNEDEDREDTEPRCSFCDAPFPNIDVLDRHLIQVHAQPAAAFHCELCNRAYSTRPLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKSYTQFSNLCRHKRMHIACRALVECGKCGNSFNSYASLTKHKRFCDTASSANVGMRGQMPQGLPQMPSLPNLGMNTPGNPNPFPMYRGPTLPLPYNTFAQYPGLFSAAAAACPPEFLNPLLFNVQGARLAMEHDFALTNASLLSKHQEGRMSVKSVDSSNSLDDIMKKNKDLDYESIKRESDTGDRTTPNKLHGLTVKQSPPSVEEVPTQQRPSPVLSMSTPMNPFNFARDDMKHRRSPFNFSLKVNNNTIQGNKSHSPFPTDLSKNDANDDEKNSEYSDSEVEVKKDEGDQPLDLSVSRKHSDKDSEADIDDRSFRNSSVKSYSPPESPMERESKTPENDTADIDVEGVEPKREDTPPQLVSPPLAFPMPVHPQHNSSLLEAMYRPRFPSFHSASDSILNSSPYVPTPFNFLSPLLGTDGPDRQPSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPPASSPHAPHAPHRPSVLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680859;
90% Identity: iTF_00657509;
80% Identity: -