Paur042218.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352293.1:10778581-10784337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 1.4 10.9 0.2 1 23 38 60 38 60 0.97 2 13 0.00021 0.023 16.5 3.2 1 21 66 86 66 91 0.94 3 13 3.4e-05 0.0038 19.0 1.9 1 22 97 118 97 121 0.91 4 13 3.4e-05 0.0038 19.0 1.9 1 22 243 264 243 267 0.91 5 13 3.4e-05 0.0038 19.0 1.9 1 22 389 410 389 413 0.91 6 13 3.4e-05 0.0038 19.0 1.9 1 22 535 556 535 559 0.91 7 13 3.4e-05 0.0038 19.0 1.9 1 22 681 702 681 705 0.91 8 13 3.4e-05 0.0038 19.0 1.9 1 22 772 793 772 796 0.91 9 13 3.4e-05 0.0038 19.0 1.9 1 22 918 939 918 942 0.91 10 13 3.4e-05 0.0038 19.0 1.9 1 22 1064 1085 1064 1088 0.91 11 13 3.4e-05 0.0038 19.0 1.9 1 22 1210 1231 1210 1234 0.91 12 13 3.4e-05 0.0038 19.0 1.9 1 22 1356 1377 1356 1380 0.91 13 13 1.4e-05 0.0016 20.2 1.6 1 23 1502 1525 1502 1525 0.96
Sequence Information
- Coding Sequence
- ATGATCAGTGATCACAAACGTAACATGACGCTGTACTCCAGGTTCTTGTGCCGCTCGTCGTGGCTGGCGCACATGCGGCGCGAGACCCGCGCGGGCGGCGCGGCGGCGCGGCACCGCTGCGGCGCGTGCGGGCGCGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGATCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACACACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCACCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCGCGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTTGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGCGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGTGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGTCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGTCTTCGCCGACTGCTCCAACCTCGCACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGTGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGATCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACACACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTTCTCCAACCTCAAGAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCACCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCGCGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTTGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGCGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGTGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGTCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGGTACGTACCCACGACCACCCTCAGGGTTCGCGGAGCGCTGGGCGCTGCTGCAGCACGCGCGCCGCCACACCGGCGAGCGCCCCTTCCGCTGCCCGCTGTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTGCACAAGCAAGTGAGCCTGCTGGTGGACAAGAACCCGCCCGCGGCGCCCGCGCCGGCGCCCGCGGCCCCGGGCGCCGCCAGCCCGCAGGACGAACGCGTCATCTACGTGGCCTACGACGTGGACGCCGGCCCCACCGCCTTCCACATCGTCGACCCCGACCAGATGACGACGGTAGAAAATGAGACGGTGCTGAACCCCAGCCCCCTGTACTCGGGCTCCTCGCTGCTGCGGCGGCCCGAGCCGGAGCCTGTGCAGCTGGAACTGCTGCAGCAGGAACAAGTGCTCGAGGAGCTGGAGCCGGTGCTGGAGGACGAGCATATGCCGGTGAGTTATGAGCCCCAGCCCCCTGTACTCGGGCTCCTCGCTGCTGCGGCGGCCGGAGCCGGAGCCTGTGCAGCTGGAACCGCTGCAGCAGGAACAAGTGCTCGAGGAGCTGGAGCCGGTGAGTTATGA
- Protein Sequence
- MISDHKRNMTLYSRFLCRSSWLAHMRRETRAGGAAARHRCGACGRGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASAPSAARCARAPSPTAPTSTSTRRYVPTTTLRDRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYTRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASTPSAARCARAPSPTAPTSTSTRRYVPTTTLRVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGLRSAGRCCSTRAATPASAPSAARCARAPSPTAPTSTSTRRYVPTTTLRVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSAFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASAPSAARCARAPSPTAPTSTSTRRYVPTTTLRVRGALGAAAARAPPHRRASLPLPAVPARLRRLLQPQQAQEGTYPRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASAPSAARCARASSPTAPTSHPRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSWSAGRCCSTRAATPASAPSAARCARAPSPTAPTSTSTRRYVPTTTLRVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSGIAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASAPSAARCARAPSPTSPTSRSTRRYVPTTTLRVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSGFAERWALLQHARRHTGEHPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASAPSAARCARAPSPTAPTSTSTRRYVPATTLRVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSRSAGRCCSTRAATPASAPSAARCARAPSPTAPTSTSTRRYVPTTTLSVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKVRTHDHPQGSWSAGRCCSTRAATPASVPSAARCARAPSPTAPTSTSTRRYVPTTTLRVRGALGAAAARAPPHRRAPLPLPAVPARLRRLLQPQQAQEGTYPRPPSGFAERWALLQHARRHTGERPFRCPLCPRAFADCSNLNKHKKQVHKQVSLLVDKNPPAAPAPAPAAPGAASPQDERVIYVAYDVDAGPTAFHIVDPDQMTTVENETVLNPSPLYSGSSLLRRPEPEPVQLELLQQEQVLEELEPVLEDEHMPVSYEPQPPVLGLLAAAAAGAGACAAGTAAAGTSARGAGAGEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -