Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352290.1:4500445-4519516[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.2 4.7e+02 3.0 0.7 10 23 64 77 63 77 0.91

2 17 0.017 1.9 10.5 0.3 3 23 86 106 85 106 0.92

3 17 0.026 2.9 9.9 3.8 2 23 113 136 112 136 0.96

4 17 0.00068 0.076 14.9 4.9 1 23 142 164 142 164 0.96

5 17 0.00014 0.016 17.1 0.9 1 23 173 195 173 195 0.96

6 17 0.00025 0.028 16.3 0.1 2 23 202 223 201 223 0.95

7 17 3.5e-05 0.0039 19.0 5.1 1 23 229 251 229 251 0.96

8 17 9e-09 1e-06 30.3 0.6 1 23 257 279 257 279 0.99

9 17 7.2e-05 0.008 18.0 1.4 1 23 285 307 285 307 0.99

10 17 3.4 3.8e+02 3.3 2.6 3 23 346 371 344 371 0.80

11 17 5.7 6.4e+02 2.6 0.1 5 23 431 448 430 448 0.86

12 17 4.6 5.1e+02 2.9 0.7 1 23 454 475 454 475 0.78

13 17 0.0018 0.2 13.6 0.1 1 23 481 503 481 503 0.97

14 17 0.0018 0.2 13.6 0.1 1 23 638 660 638 660 0.97

15 17 0.0018 0.2 13.6 0.1 1 23 1083 1105 1083 1105 0.97

16 17 0.0018 0.2 13.6 0.1 1 23 1314 1336 1314 1336 0.97

17 17 5e-05 0.0056 18.5 1.2 1 23 2009 2031 2009 2031 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.2	4.7e+02	3.0	0.7	10	23	64	77	63	77	0.91
2	17	0.017	1.9	10.5	0.3	3	23	86	106	85	106	0.92
3	17	0.026	2.9	9.9	3.8	2	23	113	136	112	136	0.96
4	17	0.00068	0.076	14.9	4.9	1	23	142	164	142	164	0.96
5	17	0.00014	0.016	17.1	0.9	1	23	173	195	173	195	0.96
6	17	0.00025	0.028	16.3	0.1	2	23	202	223	201	223	0.95
7	17	3.5e-05	0.0039	19.0	5.1	1	23	229	251	229	251	0.96
8	17	9e-09	1e-06	30.3	0.6	1	23	257	279	257	279	0.99
9	17	7.2e-05	0.008	18.0	1.4	1	23	285	307	285	307	0.99
10	17	3.4	3.8e+02	3.3	2.6	3	23	346	371	344	371	0.80
11	17	5.7	6.4e+02	2.6	0.1	5	23	431	448	430	448	0.86
12	17	4.6	5.1e+02	2.9	0.7	1	23	454	475	454	475	0.78
13	17	0.0018	0.2	13.6	0.1	1	23	481	503	481	503	0.97
14	17	0.0018	0.2	13.6	0.1	1	23	638	660	638	660	0.97
15	17	0.0018	0.2	13.6	0.1	1	23	1083	1105	1083	1105	0.97
16	17	0.0018	0.2	13.6	0.1	1	23	1314	1336	1314	1336	0.97
17	17	5e-05	0.0056	18.5	1.2	1	23	2009	2031	2009	2031	0.99

Sequence Information

Coding Sequence: ATGAGCGCAGCGGTCTCGGCGAATGGATCTGTGGATTGTAAGATGTTGGACGAAGAATTCAGTCCGGAGAGTATGCAAAAGTTATGCCGAGTGTGTTTATCGGCAGGCAACAACCAGCTGGAGCCCTTGCTGGCCCTGGAAGGCATATGCCTGGCTGAAATGTATGCCACCATAACATCTATAGATAAATTCAAAAAGGTAAAAGCCCTGCGGAACCACATGAAAAAGCACGAAAAAGAGGCTGAAGCCAACGCATGCGGGCAATGCAAGGAGGTGTTCACATCCGCGCATGACTTGCAGCTGCATAGTGGTGTGCACCTCAAGGGGCCGGTGTGGACGTGCCCTAACGCTGACTGTCACAAGGAGTTCCACAGTCGCACTGTATTCCGCCGGCACGTGCGCCGCCACATGCTCGGCAAGCGGCACTGTTGCGAACGCTGCGGCAAGGGCTTCGCGGAGCGCCACGCGCTGCGGCGGCACCTCCGGGTGCACTCCGGCCAGCCCGCGCCGCGCGGCCACGCCTGCCACCTGTGCGACAAGCGTTTCACAGACGGCAGTCTACTAGCGGCGCACATAGCACGTCACACGGGCGAGCTGCCCTGCGTTTGTCCGATATGCGATAAGCGGTTCCCCTCTGCGAGGTTACTGGCGTCGCACGCGCTCGTGCATTCTGATCTCAAGCCACACGCCTGCAACGTTTGTGACCGGCGGTTCCGACATGAATCCACGCTGCGCACGCACCTACGCACGCACACCGGAGAGAAACCCTACGTATGCTCCGTGTGCGGGAAGACCTTTATACAGAACTCCAACCTCACGCTACACATGCGCACACATACAGGAGAGCGGCCATACTCATGCTCGGTGTGCTCGCGGCGGTTCACGTCGGGCTCGTCGCTGAAGAGCCATGCTCGCACGCACACTGGAGAGAAACCGTTCAGCTGCGAGCTGTGCGGCAAGAGGCTCGTCGCTGAAGAGCCACGCCCGCGCGCACACTGGAAAGAAACCATTCAGCTGCGAGCTGTGCTGCAAAAGTGTGAGGACTGCTACACTAATGTACTGTGTTCATGCTTCACGTCGGGCTCGTCGCTGAAGAGCCACGCCCGCACGCACACTGGAGAGAAACCGTTCAGCAGCGAGCTGTGCGGAAAGAGGTCGGTCTCTAGCGACTGTAGTGTGAGGATTGCTACACTAATGTATTGTAATGTACCGTGTTCATGCTTCACGTCGGGCTGGTCGCTGAAGAGCCACGCCAGCACGCACACTGGAGAGAAACCGTTCAGCAACGAGCTGTGCGGCAAGAGGTTCGCGCGGCTGAACGTGCGCGCGCACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCAGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATATACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGTTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACATTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCAAGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCGCACCTGCGCCTGCACGCGGGCGAGCGGCCGTTCGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCGCACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGGTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGTTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACATTACAGGCACGGCTGCAAGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCAAGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCCCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACCGCCGCGCGCCTGCGGGACCACACGCGCATACACACCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCACACCTGCGCCTGCACGCGGGCGAGCGGCCGTACGCGTGCTCGGCGTGCCGGTACAGTATACAGCACACGCTCCTACAGTACAGGCACGGCTGCACGTGCACGCGCACCTGCGCCTGCACGCGGGCGAGCGGCCGTTCGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCACAGCAGCGCGCCTGCGCGACCACACGCGCATATACACCGGTACAGTATACACCACACACTCCTACCGGTACCGGCGAACGGCCATACGAGTGCGCCATGTGTCCACTAAAGTACCCGACCAAATCCCACCTAGTCAAGCACCTCAAAACCCACGAGACCAAAAAGAAGCCCAAAAACAAAGTGCTCATCCTCCAGCAAGTCGAGCCCTTCCCTAACTACGACAACACCAAAGATATCGGCGAAGAAGTACCCTTAGAAGTTACTGGAGAACTGGTTCTTCAAGAGAATGGGGACATTAAAACTGAATTGTTGGTGGTCGACGAGATGGGTGTTTGCGTGGATGGATTCGTGAGCGGCGGGTTTCAAGAACGCGTGGTGATACACTCGAAGATTGAGAACAACTTTTAA
Protein Sequence: MSAAVSANGSVDCKMLDEEFSPESMQKLCRVCLSAGNNQLEPLLALEGICLAEMYATITSIDKFKKVKALRNHMKKHEKEAEANACGQCKEVFTSAHDLQLHSGVHLKGPVWTCPNADCHKEFHSRTVFRRHVRRHMLGKRHCCERCGKGFAERHALRRHLRVHSGQPAPRGHACHLCDKRFTDGSLLAAHIARHTGELPCVCPICDKRFPSARLLASHALVHSDLKPHACNVCDRRFRHESTLRTHLRTHTGEKPYVCSVCGKTFIQNSNLTLHMRTHTGERPYSCSVCSRRFTSGSSLKSHARTHTGEKPFSCELCGKRLVAEEPRPRAHWKETIQLRAVLQKCEDCYTNVLCSCFTSGSSLKSHARTHTGEKPFSSELCGKRSVSSDCSVRIATLMYCNVPCSCFTSGWSLKSHASTHTGEKPFSNELCGKRFARLNVRAHLRLHAGERPYACSACPKAFARLHVHAHLRLHAGERPYACSACPKAFVTAARLRDHTRIHTGTVYSTRSYSTGTAARARTPAPARGRAAVRVLGVPQGLRHRRAPAGPHAHTHRYSIQHTLLQYRHGCTCTHTCACTRASGRTRARRAPRPSSPPRACGTTRAYTPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACPKAFVTAARLRDHTRIHTGTVYSTRSYSTGTAARARTPAPARGRAAVRVLGVPQGLRHRRAPAGPHAHTHRYSIQHTLLQYRHGCTCTHTCACTRASGRTRARRAGTVYSTRSYSTGTAARLHVHAHLRLHAGERPYACPACRYSIQHTLLQYRHGCTCTHTCACTRASGRTRAQRAPRPSSPPRACGTTRAYTPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACRYSIQHTLLQYRHGCTAARARTPAPARGRAAVRVLGVPVQYTAHAPTVQARLHGCTCTHTCACTRASGRTRARRAGTVYSTRSYSTGTAARARTPAPARGRAAVRVLGVPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACRYSIQHTLLHYRHGCTAARARTPAPARGRAAVRVPGVPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACPKAFVTAARLRDHTRIHTGTVYSTRSYSTGTAARARTPAPARGRAAVRVLGVPVQYTAHAPTVQARLHGCTCTHTCACTRASGRTRARRAGTVYSTRSYSTGTAARARTPAQARGRAAVRVLGVPVQYTAHAPTVQARLHVHAHLRLHAGERPYACPACRYSIQHTLLQYRHGCTAARARTPAPARGRAAVRVPGVPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACPKAFVTAARLRDHTRIHTGTVYSTRSYSTGTAARARTPAPARGRAAVRVLGVPVQYTAHAPTVQARLHVHAHLRLHAGERPFACSACRYSIQHTLLQYRHGCTCTRTCACTRASGRTRARRAGTVYSTRSYSTGTAARLHVHAHLRLHAGERPYACSACRYSIQHTLLQYRHGCTAARARTPAPARGRAAVRVVGVPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACRYSIQHTLLQYRHGCTCTHTCACTRASGRTRVRRAGTVYSTRSYITGTAARLHVHAHLRLHAGERPYACPACRYSIQHTLLQYRHGCTCTHTCACTRASGRTRARRAPRPSSPPRACGTTRAYTPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACRYSIQHTLLQYRHGCTAARARTPAPARGRAAVRVPGVPVQYTAHAPTVQARLHVHAHLRKHAGERPYACSACRYSIQHTLLQYRHGCTCTHTCACTRASGRTRARRAGTVYSTRSYSTGTAARLHVHAHLRLHAGERPYACPACRYSIQHTLLQYRHGCTCTHTCACTRASGRTRARRAPRPSSPPRACGTTRAYTPVQYTAHAPTVQARLHVHAHLRLHAGERPYACSACRYSIQHTLLQYRHGCTCTRTCACTRASGRSRARRAPRPSSQQRACATTRAYTPVQYTPHTPTGTGERPYECAMCPLKYPTKSHLVKHLKTHETKKKPKNKVLILQQVEPFPNYDNTKDIGEEVPLEVTGELVLQENGDIKTELLVVDEMGVCVDGFVSGGFQERVVIHSKIENNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -