Paur013438.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352313.1:9290595-9298542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.3e-05 0.0081 18.0 1.4 2 23 12 34 12 34 0.95 2 15 0.0089 0.99 11.4 1.5 1 23 61 84 61 84 0.91 3 15 0.0001 0.012 17.5 1.4 2 23 120 142 120 142 0.95 4 15 0.00023 0.026 16.4 0.4 1 23 148 170 148 170 0.96 5 15 0.002 0.22 13.5 0.3 1 17 176 192 176 193 0.94 6 15 0.025 2.8 10.0 4.4 1 23 214 237 214 237 0.93 7 15 5.5e-05 0.0061 18.4 1.6 2 23 273 295 273 295 0.96 8 15 1.2e-05 0.0013 20.4 0.6 1 23 301 323 301 323 0.98 9 15 0.0023 0.26 13.2 3.3 1 23 329 351 329 351 0.98 10 15 0.0012 0.13 14.2 0.2 1 23 357 380 357 380 0.96 11 15 0.071 7.9 8.6 4.3 3 23 410 431 408 431 0.95 12 15 0.00013 0.015 17.1 0.9 2 23 467 489 467 489 0.94 13 15 8.1e-06 0.0009 21.0 0.9 1 23 495 517 495 517 0.97 14 15 4.8e-05 0.0054 18.5 3.0 2 23 524 545 523 545 0.97 15 15 3e-06 0.00033 22.3 1.4 1 23 551 574 551 574 0.97
Sequence Information
- Coding Sequence
- ATGAATGAGGCTCACGGCTGGAGGGCTCCTCCTACATGCGGAGCGTGCGGAAAAAAGTTCAACTACCCGCACCAACTTAAAACACATCAAAAAGTTGTTCATCTGGGCGAAAAGAACTTTAATTGGCCTGCCAACGACTGCTTAGAATACTGCACCATTACTGGAGGAGACTCACAAGTTTACACGTGCAACGCTTGCGACAAGAATTACAAGAAAAGAGAGTTATTCCGGCAGCATTTTCTAGGGGTACATCTAAAGTTAAAGAAGAAGACACACCCTTGTGCCATATGCCGTGTGCAGCTGTTCCCCTACCTAAGGGCCAAGCATATGAATGAGGTTCACGGCTGGAAAGCTCCTACCTGCGGAGCGTGCGGAAAAATGTTCAACTACCCGCACCAACTTAAAACACATCAACAGGTTTTTCACATGGGCGAAAAGAACTTTAAATGCGAACAGTGCGGTATGGCGTTCGCTACTCAGCAGAGACTCGTGAGACATTCAGCCAAGCATTCCGATGTCAAGCCCTTCACATGCGAGTACTGTCCGAAGAGATTCAACACTGCGGAGAGTCTGCGTGGGAAGCTCAAAAGCGAATACTTACAGTTCTGCACCATAACCAATGAAGAGGGATCACAGACTTTCGCCTGCAAGACCTGCGGTGGGACTTACAAGAAATGGTCTCTGTTCACTCAGCACTACCACCACGTACATCTCAAGTTAAGAAAGAAAACTTTCCCTTGTGTCATTTGCCATGAAGATATTATTCCTTGGTACAGAGCTAAGCATATGGAAGAAGCGCATGGCTGGGAAGCCCCGACTTGCGGAGCGTGCGGAAAAAAATTCGCCTACCCGCACCAATTGACAACACATCAAAAGACATACCATATGGGCGAAAAGAATTACAAATGTGATCTCTGTGATATGGCGTTCACTAGAATGACAGGTCTGAAACGTCATTTGATAAGGCATTCCAATGTTAGAGATTTTAAATGTGATTTCTGTCCTAAAGCTTTCAAGTGCGTTAAATATTTGAGGATACATATGAAAATACATTTGAATGACAAGCGGTACGCTTGTAGAGTTTGTGCGGAGGCGTTCATGCAGTCTGGGAACTTGAAGTATCATATGGCGAAAAGACATCCCAATGAGAGAAACCCAAAGCCAGAAAGCGAATTTCTAAAGTACGTCACGGTAATCGACGAAGACGATGGCACCCAAACCCTTGCCTGCAAAGAGTGCGACAGCTCCTTCAAGAACATGCCTTGTTTCAGGCAACACTACAGACATGTCCATCTAAAACTACGCAAAAAGACATTTCCCTGCGTTATTTGCAGGGCTGAGATACTTCCCTGGCTTAAAGCGAAGCATATGGAAGACGCTCACGGGTGGGAGGCACCAAAATGTGGAGTTTGCGAAAAGAAATTCGCCTACCCTAACCAATTGACGAAACATCAACAGTTTTACCACATGGGCGAATCCAACTTCCAATGCGATCAATGCGGCAAATCATTCCCAAACAGAAAAGGCCTAAAAGATCACGCTTACAAACACTCTGATGTAAGAAACATGACCTGCGATTTTTGTTCAAAATCGTTCAAGAAAATGTCGTATTTGAAAAAGCATTTGAAAATCCATTTGAATGATAAGAGATACGTTTGCCACGTGTGTTCAGAGTCGTTTGTGCAGTGGGGCAACTTGAAGTACCACATGACGAGGCGGCATCCTGATGTTAATTATGAAGGCAAAATTAGGAGAGCTAAGCTTGATTCGGAAAATAAATAG
- Protein Sequence
- MNEAHGWRAPPTCGACGKKFNYPHQLKTHQKVVHLGEKNFNWPANDCLEYCTITGGDSQVYTCNACDKNYKKRELFRQHFLGVHLKLKKKTHPCAICRVQLFPYLRAKHMNEVHGWKAPTCGACGKMFNYPHQLKTHQQVFHMGEKNFKCEQCGMAFATQQRLVRHSAKHSDVKPFTCEYCPKRFNTAESLRGKLKSEYLQFCTITNEEGSQTFACKTCGGTYKKWSLFTQHYHHVHLKLRKKTFPCVICHEDIIPWYRAKHMEEAHGWEAPTCGACGKKFAYPHQLTTHQKTYHMGEKNYKCDLCDMAFTRMTGLKRHLIRHSNVRDFKCDFCPKAFKCVKYLRIHMKIHLNDKRYACRVCAEAFMQSGNLKYHMAKRHPNERNPKPESEFLKYVTVIDEDDGTQTLACKECDSSFKNMPCFRQHYRHVHLKLRKKTFPCVICRAEILPWLKAKHMEDAHGWEAPKCGVCEKKFAYPNQLTKHQQFYHMGESNFQCDQCGKSFPNRKGLKDHAYKHSDVRNMTCDFCSKSFKKMSYLKKHLKIHLNDKRYVCHVCSESFVQWGNLKYHMTRRHPDVNYEGKIRRAKLDSENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -