Paur029993.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:2609120-2620243[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.06 6.7 8.8 0.0 3 23 5 26 4 26 0.94 2 21 0.21 24 7.1 0.0 2 21 36 55 35 56 0.94 3 21 0.063 7 8.7 0.1 3 23 65 86 64 86 0.92 4 21 0.063 7 8.7 0.1 3 23 144 165 143 165 0.92 5 21 0.087 9.7 8.3 0.0 3 23 191 212 190 212 0.91 6 21 0.063 7 8.7 0.1 3 23 238 259 237 259 0.92 7 21 0.063 7 8.7 0.1 3 23 285 306 284 306 0.92 8 21 0.063 7 8.7 0.1 3 23 332 353 331 353 0.92 9 21 0.063 7 8.7 0.1 3 23 379 400 378 400 0.92 10 21 0.063 7 8.7 0.1 3 23 458 479 457 479 0.92 11 21 0.063 7 8.7 0.1 3 23 509 530 508 530 0.92 12 21 0.063 7 8.7 0.1 3 23 560 581 559 581 0.92 13 21 0.063 7 8.7 0.1 3 23 607 628 606 628 0.92 14 21 0.063 7 8.7 0.1 3 23 654 675 653 675 0.92 15 21 0.063 7 8.7 0.1 3 23 733 754 732 754 0.92 16 21 0.063 7 8.7 0.1 3 23 784 805 783 805 0.92 17 21 0.063 7 8.7 0.1 3 23 835 856 834 856 0.92 18 21 0.056 6.2 8.9 0.1 3 23 862 883 860 883 0.92 19 21 0.063 7 8.7 0.1 3 23 913 934 912 934 0.92 20 21 0.064 7.1 8.7 0.1 3 23 960 981 959 981 0.92 21 21 0.063 7 8.7 0.1 3 23 1011 1032 1010 1032 0.92
Sequence Information
- Coding Sequence
- ATGGATGTGGCATGCGACGTGTGCGGCGAGACGTTTGTCGGACCACTAGGACTGCTGCAACACAAGTCGAGAGCACACCAGGTGACAGTGGTCAAGCCGGAGTCCGTTTGCGCAGAGTGCGGCGCGCAGTTTGAGTCCATGGACGCGCTGGGCCGGCACACGCGGGCGCCGTGCGACCCACAGGCCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGGCCCTGTCTGGCGTGCGGCGAGACGTTGACCACGGAGGAAGAACTCTAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGCAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGACCACGGAGGAAGAACTCTAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGGTAACTGTGGCAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGGTAACTGTGGCAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGACCACGGAGGAAGAACTCTAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGGTAACTGTGGCAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGGTAACTGTGGCAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGGTAACTGTGGCAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAAATGTCTACAGAGCACGGAACTCGGTGTCCATCGGCTTTTCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGACCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTAAAATGTCTACAGGTAACTGTGGCAGAGCACGGACTCGGTGTCCATCGGCTTTCCGTTAATCTCCGCAGGCCCTGTCTGGCGTGCGGCGAGACGTTGTCCACGGAGGAAGAACTCCAAGCTCACACGAAGGAGCGCCACAGCACGGACCAGTTCAGTATTAGTAGTAGTAGTAGTAAAACACTTTATTGTACAAGAAAACACAACGAAATACATGAACACAACATATaa
- Protein Sequence
- MDVACDVCGETFVGPLGLLQHKSRAHQVTVVKPESVCAECGAQFESMDALGRHTRAPCDPQARPCLACGETLSTEEELQAHTKERHSTDQFKCLQALSGVRRDVDHGGRTLSSHEGAPQHGPVQMSAEHGLGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTQERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQALSGVRRDVDHGGRTLSSHEGAPQHGPVQMSTEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQVTVAEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQVTVAEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQALSGVRRDVDHGGRTLSSHEGAPQHGPVQMSTEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQVTVAEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQVTVAEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQPCLACGETLSTEEELQAHTKERHSTDQFKCLQVTVAEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFKCLQSTELGVHRLFVNLRRPCLACGETLTTEEELQAHTKERHSTDQLKCLQVTVAEHGLGVHRLSVNLRRPCLACGETLSTEEELQAHTKERHSTDQFSISSSSSKTLYCTRKHNEIHEHNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -