Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352307.1:24380581-24403950[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00012 0.014 17.2 6.4 1 23 79 101 79 101 0.98

2 13 4.2e-06 0.00046 21.9 0.2 3 23 115 135 114 135 0.98

3 13 0.00017 0.019 16.8 3.0 2 23 144 165 144 165 0.98

4 13 0.00026 0.029 16.2 1.8 1 23 171 193 171 193 0.98

5 13 1.8e-05 0.0021 19.8 1.1 1 23 199 221 199 221 0.98

6 13 2.9e-05 0.0033 19.2 8.4 2 23 228 249 227 249 0.97

7 13 1.5e-05 0.0016 20.2 0.7 1 23 255 277 255 277 0.98

8 13 1.9e-05 0.0021 19.8 1.3 1 23 283 305 283 305 0.98

9 13 0.002 0.22 13.5 0.7 1 23 311 333 311 333 0.98

10 13 0.0017 0.19 13.7 1.2 1 23 339 361 339 361 0.97

11 13 0.0031 0.35 12.8 1.2 3 23 369 389 367 389 0.97

12 13 0.00011 0.012 17.5 0.8 1 23 395 417 395 417 0.98

13 13 0.00036 0.04 15.8 2.5 1 23 465 487 465 487 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00012	0.014	17.2	6.4	1	23	79	101	79	101	0.98
2	13	4.2e-06	0.00046	21.9	0.2	3	23	115	135	114	135	0.98
3	13	0.00017	0.019	16.8	3.0	2	23	144	165	144	165	0.98
4	13	0.00026	0.029	16.2	1.8	1	23	171	193	171	193	0.98
5	13	1.8e-05	0.0021	19.8	1.1	1	23	199	221	199	221	0.98
6	13	2.9e-05	0.0033	19.2	8.4	2	23	228	249	227	249	0.97
7	13	1.5e-05	0.0016	20.2	0.7	1	23	255	277	255	277	0.98
8	13	1.9e-05	0.0021	19.8	1.3	1	23	283	305	283	305	0.98
9	13	0.002	0.22	13.5	0.7	1	23	311	333	311	333	0.98
10	13	0.0017	0.19	13.7	1.2	1	23	339	361	339	361	0.97
11	13	0.0031	0.35	12.8	1.2	3	23	369	389	367	389	0.97
12	13	0.00011	0.012	17.5	0.8	1	23	395	417	395	417	0.98
13	13	0.00036	0.04	15.8	2.5	1	23	465	487	465	487	0.99

Sequence Information

Coding Sequence: ATGCTAAATTATTGGGGCAATACGTCTTTTGCTGACTGGACGCACGCGCCGCACGAGGCTTTAAACGTGTTAGGTGCATTGCACCGAACACCAAGGTCGCGCCGTCTGAGGGGCTTGTCGGCGACCATTGAACCATCACCTTCCAACAAAGAGGATCCCGGCCTCAACTCGGACGAGGAGAACTACCTCCAACTGGTAGTGTTCCAAGCGACGTCCTCCGTGGCCCCCGGGCGCCACGTGTGCAACCTGTGCCACAAGGAGTTCAAGCACGCGCGCTGGCTGAAGCTGCACATGCGGTCGCACACCAACTGGATCAAAGCCAATTGTAAGAAGCCGCCGATGTGCCCCATCTGTGAGAGGACTTTCAAGGGCCCGGGCATGCTGAAAATGCACATGCGTACCCACGAGCAGCGGCCACCCAAGCAGCCGACATGCTCGGTCTGCCAGCGGAATTTCTCCACCAAAACGTTATTGTATCGCCATAGGCAGACACACTTCGAGCAGAAGAGCCACCAGTGCTCGGTGTGCGAGAAAAGGTTCTATAGCGGCTACGCGCTGCGCTCGCACATGGCACGGCACCGCGGCGAGCGCCCCTACGTGTGCTCCATGTGCTCGAAGAGCTTCTACAACCCCACCGACTTGAAGGTCCACTTCCGCCTCCACACCGGCGAGAAGCCGCTAAAGTGCTCCGAATGCAACAAGACCTTCCGCCGGCACTCCACGCTCTGTCAGCACATGAAGAAACACAGGGGGATAAGGAATCACGTGTGCAACGTGTGCAACAAGGCCTTCTACGAGGTGTCCAAGCTCAATGCGCACATGAGAGTGCATACTGGTGAACGTCCATTCGAATGTCAATTCTGCGAGCGCCGCTTCGCCCAACAATCCGCGCTGATCTACCACCGGCGCACGCACACTGGTGAAAAACCGTACAGCTGTAAACTATGCGCCGCTCGTTTTACCACGTCATCCGCTAGGAATAATCACATGGTCACACACACTGGGAACAAGAGGTTCGTGTGCCCAGTCTGCTTCAAGGGCTGCACGTCCCGCGCAGAGCTCCGCGTGCACTCCAGCAAGCACACGGGAGAGAAACTCTTCGGCTGCTCTCTGTGCTCCGCGCGGTTCAGCTCCGCCTCCTACTTGGCGGTTCACAGGCGCCATCACACGGGAGAGAGGAAGTACAGCTGCAACGTGTGTGGCCGAGGTTTCATGGAATCCGGTTCTTACAAGAAGCACCTAAAATCCCATGAAACCAAGCCTGAAGATTCCTCCGAGTCAACCGAAGCGGAAAAGGGAGAAGAGGAAGACAGCCAGACAGGGGAGGAGCAAGACTCTCCTGCTCCTCAAGAGGTTCAGCAAGAGGTGGAGGTGCCGCAAACGCAGAGAAGGTACAAGTGTGGTGTCTGTGTGAAGACTTATATGTATCTGCACAGTTTGAAGAAACACATGGCTACCCATGTACAGTCACAACAACAACAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAACAAGTACAGCAAGTCCAACAAGTTCAAGTACAACAGCAGCATGTGCAGCAACAACAACAAGTATCGGTGCAGCAAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAGGCGCCCAGTTGCAGCAACAAGTGCTGCAAGTGGGAGGAATGCAGCAGTTGGTGCCGGTGCACGCACAGCAGCCGTCTCTAGTTCAGGTAACAACAACAACAAGTATCAGTAG
Protein Sequence: MLNYWGNTSFADWTHAPHEALNVLGALHRTPRSRRLRGLSATIEPSPSNKEDPGLNSDEENYLQLVVFQATSSVAPGRHVCNLCHKEFKHARWLKLHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRNFSTKTLLYRHRQTHFEQKSHQCSVCEKRFYSGYALRSHMARHRGERPYVCSMCSKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKAFYEVSKLNAHMRVHTGERPFECQFCERRFAQQSALIYHRRTHTGEKPYSCKLCAARFTTSSARNNHMVTHTGNKRFVCPVCFKGCTSRAELRVHSSKHTGEKLFGCSLCSARFSSASYLAVHRRHHTGERKYSCNVCGRGFMESGSYKKHLKSHETKPEDSSESTEAEKGEEEDSQTGEEQDSPAPQEVQQEVEVPQTQRRYKCGVCVKTYMYLHSLKKHMATHVQSQQQQQQQQQQQQQQQQQQQQQQQQQVQQVQQVQVQQQHVQQQQQVSVQQVGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGAQLQQQVLQVGGMQQLVPVHAQQPSLVQVTTTTSISRRPVAATSAASGRNAAVGAGARTAAVSSSGNNNNKYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -