Paur031203.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:13822298-13871764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.9 2.2e+02 4.0 0.2 1 23 355 377 355 377 0.96 2 26 0.00076 0.084 14.8 7.5 1 23 384 406 384 407 0.95 3 26 0.13 15 7.7 1.8 1 23 411 433 411 433 0.97 4 26 0.12 13 7.8 1.8 1 23 438 461 438 461 0.97 5 26 0.0047 0.53 12.3 0.5 1 23 465 488 465 488 0.94 6 26 0.0052 0.58 12.1 0.5 3 21 502 520 501 525 0.93 7 26 2.2 2.4e+02 3.9 0.4 2 23 578 600 577 600 0.94 8 26 0.02 2.3 10.3 1.0 2 20 616 634 615 637 0.89 9 26 9.1e-05 0.01 17.7 0.8 1 23 643 665 643 665 0.98 10 26 5.2e-05 0.0058 18.4 1.6 1 20 672 691 672 693 0.95 11 26 1 1.2e+02 4.9 0.4 7 23 706 722 706 722 0.97 12 26 5.2e-05 0.0058 18.4 1.6 1 20 729 748 729 750 0.95 13 26 1 1.2e+02 4.9 0.4 7 23 763 779 763 779 0.97 14 26 5.2e-05 0.0058 18.4 1.6 1 20 786 805 786 807 0.95 15 26 1 1.2e+02 4.9 0.4 7 23 820 836 820 836 0.97 16 26 5.2e-05 0.0058 18.4 1.6 1 20 843 862 843 864 0.95 17 26 1 1.2e+02 4.9 0.4 7 23 877 893 877 893 0.97 18 26 5.2e-05 0.0058 18.4 1.6 1 20 900 919 900 921 0.95 19 26 1 1.2e+02 4.9 0.4 7 23 934 950 934 950 0.97 20 26 5.2e-05 0.0058 18.4 1.6 1 20 957 976 957 978 0.95 21 26 1 1.2e+02 4.9 0.4 7 23 991 1007 991 1007 0.97 22 26 5.2e-05 0.0058 18.4 1.6 1 20 1014 1033 1014 1035 0.95 23 26 1 1.2e+02 4.9 0.4 7 23 1048 1064 1048 1064 0.97 24 26 5.2e-05 0.0058 18.4 1.6 1 20 1071 1090 1071 1092 0.95 25 26 1 1.2e+02 4.9 0.4 7 23 1105 1121 1105 1121 0.97 26 26 0.00019 0.022 16.6 1.7 1 20 1128 1147 1128 1148 0.96
Sequence Information
- Coding Sequence
- ATGCGGTGTTGTGTGCCGGGCTGCAAAAATGACTCCAGACATATCTCCAAGTCCCAGGGAATCACTTTTCATGTGTTCCCAACAGAACCAGCTCTCCGCTCCTCCTGGCTCCGGGCTCTTGGTAAAGAATCCTGGGAGCCCAAGGAGCGCAGTGCGGTCTGCTCCGAGCATTTCCTCTGCGAAGACTTATATGAGACTAAGAGTGGGCTGAGGAAAGTGAGGGCTGGCGCTGTACCGATAGTACAGAATGTGGAGTGTGATTATGAAGAGGCTGCTGCTTTGCAGGTGTGCCGAATATGTCTGGTTGTGGACGTCAGACTGTTGTCCATCAGAAAATATAGGCTGGAGGAAGCTTATCACAATCTCACTGGGCTAGTGCATGAAGACAAGCTGCCCGGTCAACTATGTGTAGAATGCGCGCATCGACTCTTGAACAGTAGCAGGCTGCGAAACAAAAGTCTAAGGGCACATTCTATTATGATGGAGATCGTCAGCAGGCAGGATAGCCTAACCCTACAAAACCTAGCCACAATAAATCGAGGCAATAATAGACTAACCTCATACCTAGGACCTAAATATTACGAACCTAACTTCTACAACCAAACCCTGGACCACGATTTAATTAACGATGAAAAAGAAATACCAATATATGAAGTTAACATCGCAAATGAAATAGTTATCAAAAATGAAAACAATGATTTCAATGAAGAAATTAATGAAATGAAGCAAGAGAATAATGAAGTTAATGATGATGATAACGATGTAGATTTTGTGGCGTCTGATAGAGAATATTCCACTGATGATAGTTTGCCGCTAGAAGCTAGAAGAAAAAAGAAGGAGAAGGAAAAGAAGAATAAAATTGAGAAGAAGGAGGTTATTAAAAAGGTGCGAAAGAGACAAGTCAAGAAAGATCCGGCGCAGCCAAAGATCGACCGGCGACGCAAACCGTTTTTAAACGACGAACTGAACGAAACCCTGTTCACAATCACCGATCTCACTCAAGACGAGCAGCTGGAAGAGATAAGGAAACGGCAGGAAACTTCAAATTATAAAAATTCAGTGTTCAAATGTGAAGCGTGCTTCAAAGGATTCCTAGACGAAGTTGCTTACAATAGCCACATCGTCAGACATACTGATCAATGTGGGGAATACGAGTGCAACATATGTAAAACGCATTTTAAACACCCGCACGCTCTAAGGAAACATATCACAGCGCACCATACACAACGATTCAGTTGCAACCAGTGTCCGTACGTCACCACTCATCGACAGACGGCAAGATTACATGAAAGGTGGCATAAAGGAACCAAATATCAATGCCCACATTGTCAGGATGAGTTCGTCAAATTCACAACGTACATGGGCCATATACGCATCAAGCACCCGTCGGACTTCGTGTGCCAGCTGTGCGGGTACTCGTTCGTTAGTCAGAAAGGGATAGAGCTACACAAGAAGCTGAAACACAGGCTTGATGACGCGCAGATACCAGAGGACGGCCCGTTTTGCGAGCTATGCAACGTGCGTTTCGTGTCCAACGAGGCTCTCAGACGACACATTCATGTTTCGGCCAGACACGCGGGCAGTGACAAAGACGATAAGGAATCCAACAACTGTAAGAGGCCACGGAGGCCGCGGGAGCCGAACGTGGCGCGCGAGCGGAGGCGATCGCGGAGCGACTCGAGCGATCGCCGCCCGTACCCCAGCCAGCTGCGGAAGGCTGAAGGACCCATTCCTTGTGAACAGTGTGGAATGCAGCTAGAAGACTCTAGGGCATACCATGGCCACTTCCGGCGGATGCACCCGGACAAGAATCGAACCAACTACCCCTCCATGAAGTCGCCTTGCATGTGCGAGGTGTGCGGCCGGATGTTCCAGAGCTACGCCCTCCTTAAAGACCACACGTGGACCCACACAGGCGAGCGGCCATTCAAATGCGACGCGTGCGGTAAATCGTTCCGCATGAAGCAGCGGCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGATGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCATTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACTTGTCGTGA
- Protein Sequence
- MRCCVPGCKNDSRHISKSQGITFHVFPTEPALRSSWLRALGKESWEPKERSAVCSEHFLCEDLYETKSGLRKVRAGAVPIVQNVECDYEEAAALQVCRICLVVDVRLLSIRKYRLEEAYHNLTGLVHEDKLPGQLCVECAHRLLNSSRLRNKSLRAHSIMMEIVSRQDSLTLQNLATINRGNNRLTSYLGPKYYEPNFYNQTLDHDLINDEKEIPIYEVNIANEIVIKNENNDFNEEINEMKQENNEVNDDDNDVDFVASDREYSTDDSLPLEARRKKKEKEKKNKIEKKEVIKKVRKRQVKKDPAQPKIDRRRKPFLNDELNETLFTITDLTQDEQLEEIRKRQETSNYKNSVFKCEACFKGFLDEVAYNSHIVRHTDQCGEYECNICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCQLCGYSFVSQKGIELHKKLKHRLDDAQIPEDGPFCELCNVRFVSNEALRRHIHVSARHAGSDKDDKESNNCKRPRRPREPNVARERRRSRSDSSDRRPYPSQLRKAEGPIPCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWTHTGERPFKCDACGKSFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRAMYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01133792;
- 90% Identity
- iTF_01133792;
- 80% Identity
- iTF_01133792;