Basic Information

Insect: Pammene aurita
Gene Symbol: BCL11B
Assembly: GCA_947086415.1
Location: OX352313.1:13341585-13346007[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.2 1.3e+02 4.7 4.1 1 14 202 215 202 227 0.78

2 15 0.002 0.22 13.5 3.5 1 23 233 255 233 255 0.95

3 15 5.3e-06 0.00059 21.5 1.1 1 23 261 283 261 283 0.98

4 15 1.8e-06 0.0002 23.0 4.8 1 23 289 311 289 311 0.98

5 15 0.00019 0.022 16.6 0.9 1 23 345 367 345 367 0.98

6 15 0.00036 0.04 15.8 2.9 1 23 373 395 373 395 0.94

7 15 7e-05 0.0078 18.0 4.7 1 23 400 422 400 422 0.98

8 15 4.9e-06 0.00054 21.7 0.4 1 23 428 450 428 450 0.98

9 15 0.001 0.11 14.4 3.7 1 23 456 479 456 479 0.94

10 15 1.1e-05 0.0012 20.6 1.2 1 23 487 509 487 509 0.97

11 15 0.0001 0.012 17.5 1.1 1 23 526 548 526 548 0.98

12 15 2.2e-05 0.0025 19.6 3.3 1 23 554 576 554 576 0.98

13 15 1.7e-05 0.0019 20.0 2.3 1 23 582 605 582 605 0.96

14 15 0.00017 0.019 16.8 0.3 1 23 611 633 611 633 0.96

15 15 0.0035 0.39 12.7 3.3 1 23 639 662 639 663 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.2	1.3e+02	4.7	4.1	1	14	202	215	202	227	0.78
2	15	0.002	0.22	13.5	3.5	1	23	233	255	233	255	0.95
3	15	5.3e-06	0.00059	21.5	1.1	1	23	261	283	261	283	0.98
4	15	1.8e-06	0.0002	23.0	4.8	1	23	289	311	289	311	0.98
5	15	0.00019	0.022	16.6	0.9	1	23	345	367	345	367	0.98
6	15	0.00036	0.04	15.8	2.9	1	23	373	395	373	395	0.94
7	15	7e-05	0.0078	18.0	4.7	1	23	400	422	400	422	0.98
8	15	4.9e-06	0.00054	21.7	0.4	1	23	428	450	428	450	0.98
9	15	0.001	0.11	14.4	3.7	1	23	456	479	456	479	0.94
10	15	1.1e-05	0.0012	20.6	1.2	1	23	487	509	487	509	0.97
11	15	0.0001	0.012	17.5	1.1	1	23	526	548	526	548	0.98
12	15	2.2e-05	0.0025	19.6	3.3	1	23	554	576	554	576	0.98
13	15	1.7e-05	0.0019	20.0	2.3	1	23	582	605	582	605	0.96
14	15	0.00017	0.019	16.8	0.3	1	23	611	633	611	633	0.96
15	15	0.0035	0.39	12.7	3.3	1	23	639	662	639	663	0.95

Sequence Information

Coding Sequence: ATGGAGGAGTTGCATTCGTGTAGCTGCTGCCTGGTCCGCCCTCCAGAGAAGGGGCTCAAGACGCTGTATAAACATCTCGGCAAAACAGAGATATATTACGATATGTTAAAAGACTGTTTTGATATAAATCTTGGCCTCGGAAATGACGAGTGTGGTATCTGCGAGGTGTGTGTGGCACGCCTGCGGGATGCGAGCGATTTCAAGCAACAAGTGCAGCGCAGCCAGACCGAGCTGCAAATGCGGCTCAAAGGAGTGCTCACTGCCAGTGACAAGTTCAAAGTTAAGTTGGAGAAAGCTGCTGGAGATGAATCTGTTATTACTAGTGTGGAGGTGCCTCGGCCGAGGCAAACGCACGCGGGGCCGCAATGCCTCGGGCTAGGCACGTTCACACTGGCCGAGCTGCCTCCCGCGGTATTTTCCTCGCGAGGCGGCGACATCAAGACGGAGAAATCAGAGGTGGAGATGGCCGATGGCGAGGTCGTTTCAGTTGCCATATACGAAGAACCACCGGGGACTTCAGCACGACCCGTTTCTACTGCGTCCAGCCGTTCTACGCCGGACCCGACACCCAGCGATCCCGAGCCGAAGAAACGCGGTAAAGTACACACGTGTGACATTTGTAACAAGAAATTTGGAAACCCAAACGCGAAAACCAGGCTCATGATCCACCGTAGATCTCATACAGGAGAGAAACCGTTCGCGTGTGACGTATGTGACAAGAGATTCTTACAAAAGAGCCATCTAAATGATCATTACGCACACCATATAGGCAAGTTCAAGTTCTCCTGCGAACTATGCGACGGGCGGTTCACACAAAAAAGTCAATTTGTTATACACATGCGCACGCACACCGGCGCGAGACCATACTCCTGTGATATGTGCAACAAAACTTTCAGACAAAAAGGCCACTTGACCGTTCATAAAAGAAAACACTCCAAATTTGATTATAGTCAAGTAGAGCCAGGAGAAATAACAGTATGCAAAAAAGAATCGGATGACAGTAAAGACCTACCCACAGATACAAAAAAAATATTCACTTGTGACATTTGTAGAAAACAATTTGCGGAAGAAAGCACCTTCACTGCACATTTAAAAAATCATTCTGGTGATTATCCATTCACTTGCGATATCTGTGAAAGGAGATTCAATACGCAGTTCACCTTGAAGAATCATAAATTTGAACATACGGGGAAACCTTACAAGTGTGATAAATGTAGTAAAGCTTATACGTCAAAATGTGCTTTAAAACTCCATATGAGATTTCACGCTGAGGATTTTAAGTTCTCTTGCGTAGTATGCAATAAACGATTCATAAAAAAAGACGCTTTAAGTATACACATGCGAGTACATACCGGAGACAAACCTTATACCTGTGAATTGTGTCAAATGAAGTTTAGCTACAGATGTAGCTTAAAAAGGCATTTATTGGCACAACACAACCAGGTCATGGACAAACAGTTCTGTTGCGATATCTGTGGGAAACGATTTGCACTACAAGGTACTTTAGCTAAGCATATGGATAAACACGCTGAGAAGGAAATGGAAGACAAAGCCTTAAGGGAAGGCCGGAAGGAATACATGTGCGAAATATGTTCTAAAAGATTTTCAACTAAAGGCATCTTGAGGAATCATAGAGAAACTCACTCCGAAGAAAAACCTTTCGAGTGTGAAGTCTGTCATAAGAAGTTTCGAAACAAGAGACTTTTACAGGAACACAAGATGGTTCACGAGGATTTTAAGCAACACGCGTGTGAACAATGCGGGCAGCAGTTCAGACACAAATCAGCGTTGACAGTGCATGTCAGAAGAGTTCACTCAGCGGCCAGGCCACATGCCTGCGATATTTGTAAAAAGGCTTTTTCAATTCTTGCTGCTTTAAAAGAGCATTATCGGGTACACACTGGGGAGAGGCCATATGCGTGCGAAATATGTTACAAGAAATTCCAGCGCCATAGCGGGGTTAAGAAACATCTCATAAGTGTTCATCACGAGAAACCTACGAGATTTATTAAAGTAAAAGATTTTAATAATTATAACTGA
Protein Sequence: MEELHSCSCCLVRPPEKGLKTLYKHLGKTEIYYDMLKDCFDINLGLGNDECGICEVCVARLRDASDFKQQVQRSQTELQMRLKGVLTASDKFKVKLEKAAGDESVITSVEVPRPRQTHAGPQCLGLGTFTLAELPPAVFSSRGGDIKTEKSEVEMADGEVVSVAIYEEPPGTSARPVSTASSRSTPDPTPSDPEPKKRGKVHTCDICNKKFGNPNAKTRLMIHRRSHTGEKPFACDVCDKRFLQKSHLNDHYAHHIGKFKFSCELCDGRFTQKSQFVIHMRTHTGARPYSCDMCNKTFRQKGHLTVHKRKHSKFDYSQVEPGEITVCKKESDDSKDLPTDTKKIFTCDICRKQFAEESTFTAHLKNHSGDYPFTCDICERRFNTQFTLKNHKFEHTGKPYKCDKCSKAYTSKCALKLHMRFHAEDFKFSCVVCNKRFIKKDALSIHMRVHTGDKPYTCELCQMKFSYRCSLKRHLLAQHNQVMDKQFCCDICGKRFALQGTLAKHMDKHAEKEMEDKALREGRKEYMCEICSKRFSTKGILRNHRETHSEEKPFECEVCHKKFRNKRLLQEHKMVHEDFKQHACEQCGQQFRHKSALTVHVRRVHSAARPHACDICKKAFSILAALKEHYRVHTGERPYACEICYKKFQRHSGVKKHLISVHHEKPTRFIKVKDFNNYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -