Paur030081.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:3953894-3974591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00096 0.11 14.4 0.1 1 23 322 344 322 344 0.98 2 18 0.095 11 8.2 3.9 1 23 351 373 351 373 0.96 3 18 0.0069 0.77 11.8 1.8 1 23 377 399 377 399 0.97 4 18 1.8e-05 0.002 19.9 1.9 1 23 404 427 404 427 0.98 5 18 0.035 3.9 9.5 0.0 3 23 434 455 433 455 0.95 6 18 0.035 3.9 9.5 0.0 3 23 480 501 479 501 0.95 7 18 0.035 3.9 9.5 0.0 3 23 526 547 525 547 0.95 8 18 0.035 3.9 9.5 0.0 3 23 572 593 571 593 0.95 9 18 0.035 3.9 9.5 0.0 3 23 618 639 617 639 0.95 10 18 0.053 5.9 9.0 0.1 3 23 664 685 664 685 0.96 11 18 0.035 3.9 9.5 0.0 3 23 710 731 709 731 0.95 12 18 0.017 1.9 10.5 0.1 1 21 738 758 738 763 0.93 13 18 0.0081 0.9 11.5 0.2 3 23 769 790 768 790 0.95 14 18 0.0038 0.42 12.6 0.5 1 23 795 818 795 818 0.96 15 18 0.0001 0.011 17.5 0.3 1 23 846 868 846 868 0.98 16 18 2.9e-05 0.0033 19.2 0.1 1 23 874 896 874 896 0.97 17 18 6.6e-06 0.00073 21.3 1.0 1 23 902 925 902 925 0.98 18 18 3.5e-05 0.0039 19.0 0.3 2 23 933 955 932 956 0.95
Sequence Information
- Coding Sequence
- ATGGATATAACACGGAACGAAGACGAAAACAGGTCTTCGAACGAAGACGCCTTGTTATGCTGTCGTGCCTGTCTTTCCACCGACGGCAGACTGTTCAACATCCATGAATACCAACTTGCTGATGCCTTTGGGGAGGTCACTGGGAGTCCTGTTGTGAAGGACCGGCGCCCGCAGCACCTGTGCGCGTACTGTGGCGCCCAGCTGCTCAGGTGTGCGGCCTTTAGGGACATGTGTCTGGAGGCCCAGCGGACTATCACTCCACTGCTCAAGGACAAGCTGGATACATATAGTCTTCGCAGAATAAAGCCTCTATCCAACCTTAACCTCTCAGTAACTGACGTCGAACACGTAGAATACATAGATACCCCTCCAGCAGACAGCATAAAACATGAACCCAACATAGACATCGTCGACATAGACGGCATCATAGGCAAAACTGATTTGAAAGAAGAAAACAAAGACGTTAAAACTAGACCAGTTAGGAGAAAAAGAAAAATCGGGACTACAGCCAAGAAAAGTCAAGCAATTAAAATTATTAAAAATAACGATGAACCTGAAGTCAGTCTCTCAGACACCAAGATCAAAATGGAAGTAGATATTGAACGCATCACTTATCATGAATACGATGGTGTTGAAACTAAGAAAGAGGAAATCGAATCTGACGATAACAACGATGATATAGATAGCGATACGCCTTTGAAAATAGCTAAAACTAAAAGGACTGCAGTTAAGAAGAAAGTAGAATTGAAAAAAGAAAGCAAACAAAACAAGGAACAAGTGAAAAGAAGAAGAAAGAAGGAGGGTAAAAGGAAGTTTAGGGATCCAGCAAATGATAATATGCCAATATTTGATTTTGCCTCGTTTGAGAATGCCCATGCAGTGAAGATTTTTACATTGACCAAGGAGGAACAAATGGAAGAGATCAACTTGCGCAAGAAGACCAGGAACTACTTGGAGTCGAACTTCCGGTGTGAGGACTGCGGGCGAGGCTTCGACGCTGAGGCGGCCTACAACAACCACCTGCTGCGGCACAGCCCTAGCGAGGGCCAGTATCCGTGCGAGATTTGCGGCATGAGGTTCAAACTGAAGTGCATGTGCCAACGACACCAGGATGTGCACCGACTCAAGTTCATATGCAACGAGTGCAACTACGTGTCCAGGGACAGGTACCAAGCGCGGAGGCACCACGCCATGCACACGGGCAAGACGTACGAGTGCCAGCACTGCGGGAAGATTTTTAATAAGAGTTCAACGTACCTGTCGCACGTGCGGATGGCACACCCCGCCCTCAACGCGGCGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGGTACGTGGTGAGGGGGAGAGGGGGTGTAAACACGTGCTGATAGCGCACCCCGCCCTCAACGCGGCGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGGTACGTGGTGAGGGGGAGAGGGGGTGTAAACACGTGCTGATAGCGCACCCCGCCCTCAACGCGGCGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGGTACGTGGTGAGGGGGAGAGGGGGTGTAAACACGTGCTGATAGCGCACCCCGCCCTCAACGCGGCGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGGTACGTGGTGAGGGGGAGAGGGGGTGTAAACACGTGCTGATAGCGCACCCCGCCCTCAACGCGGCGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGGTACGTGGTGAGGGGGAGAGGGGGTGTAAACACGTGCTGATAGCGCACCCCGCCCTCAACGCGGGGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGGTACGTGGTGAGGGGGAGAGGGGGTGTAAACACGTGCTGATAGCGCACCCCGCCCTCAACGCGGCGTGCGACGTGTGCGGGGAGACCTTCGTGGGGCCGCTCGGGCTCAAGCTGCACAAGAGCAGGGCCCATGCTGAGAAACCGCAACAATTCAAGTGCACGACCTGCTCAGTAAACTTCGTGAGCTTAGCCGCTCTGAACACACACACGGACACGGCGGGCGAGCACGCAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACGGGAACATGTCAGAGAGAAACATCCGAAGGAAACTTATGACTGCACAGAGTGCGGCATGTCGTTCCCTAGTGCGGCGGCGCGCGAGCTGCACCACAAACGGAAGCACTTGGGGCAGCGCTACACCGGCACCAAGATGGACCGCGCCATGCGCAAGCGGTACGCGCAGAAACCACAGCCGAAAGGGGTATTCGTGTGTGAGCAGTGCGGCCGAGTCGCGAAGAACGCTACCTTGCTACGGTACCACCAGCGTTCCCATCAGGAAGTGAAGCCGTTCGCCTGCAACCTGTGTCCGAAGAGCTTCCCCCTCAAAACAGCGCTAGAGGAGCATATCCGGTCGCACACGGGTGAGAAACCATACCAGTGCCCCGAGTGCCCGCTCGCCTTCAGTCTGAAGGGGAACTTCAACCGACACCACAAAACTGCGCACCTCGGGCTCCGCGCCAACGTGCCGTGCTCCATCTGCGGGCGCGTGTTCTCCACCAAGGCCGTGCTGCGCACGCACGTCAGCACCGTGCACCACGGCCAGCCCTGGCCCAAGCGGGACCGCACCAAGCGACCCAAGAGCGGCAAGAACACGCCCCACACACCCCACGACCTAGTGCTGCTGGATAACAAGTAA
- Protein Sequence
- MDITRNEDENRSSNEDALLCCRACLSTDGRLFNIHEYQLADAFGEVTGSPVVKDRRPQHLCAYCGAQLLRCAAFRDMCLEAQRTITPLLKDKLDTYSLRRIKPLSNLNLSVTDVEHVEYIDTPPADSIKHEPNIDIVDIDGIIGKTDLKEENKDVKTRPVRRKRKIGTTAKKSQAIKIIKNNDEPEVSLSDTKIKMEVDIERITYHEYDGVETKKEEIESDDNNDDIDSDTPLKIAKTKRTAVKKKVELKKESKQNKEQVKRRRKKEGKRKFRDPANDNMPIFDFASFENAHAVKIFTLTKEEQMEEINLRKKTRNYLESNFRCEDCGRGFDAEAAYNNHLLRHSPSEGQYPCEICGMRFKLKCMCQRHQDVHRLKFICNECNYVSRDRYQARRHHAMHTGKTYECQHCGKIFNKSSTYLSHVRMAHPALNAACDVCGETFVGPLGLKLHKSRAHAEVRGEGERGCKHVLIAHPALNAACDVCGETFVGPLGLKLHKSRAHAEVRGEGERGCKHVLIAHPALNAACDVCGETFVGPLGLKLHKSRAHAEVRGEGERGCKHVLIAHPALNAACDVCGETFVGPLGLKLHKSRAHAEVRGEGERGCKHVLIAHPALNAACDVCGETFVGPLGLKLHKSRAHAEVRGEGERGCKHVLIAHPALNAGCDVCGETFVGPLGLKLHKSRAHAEVRGEGERGCKHVLIAHPALNAACDVCGETFVGPLGLKLHKSRAHAEKPQQFKCTTCSVNFVSLAALNTHTDTAGEHADLRPCEQCGENCASEDALREHVREKHPKETYDCTECGMSFPSAAARELHHKRKHLGQRYTGTKMDRAMRKRYAQKPQPKGVFVCEQCGRVAKNATLLRYHQRSHQEVKPFACNLCPKSFPLKTALEEHIRSHTGEKPYQCPECPLAFSLKGNFNRHHKTAHLGLRANVPCSICGRVFSTKAVLRTHVSTVHHGQPWPKRDRTKRPKSGKNTPHTPHDLVLLDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -