Paur014476.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pammene aurita
Gene Symbol
-
Assembly
GCA_947086415.1
Location
OX352313.1:23287735-23322483[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 6.5e-05 0.0073 18.1 3.5 1 23 205 227 205 227 0.97
2 17 1e-06 0.00012 23.8 0.4 1 23 233 255 233 255 0.98
3 17 1e-05 0.0011 20.7 2.4 1 23 261 283 261 283 0.97
4 17 4.6e-05 0.0052 18.6 0.4 1 23 289 310 289 310 0.98
5 17 0.00089 0.099 14.5 0.8 1 19 316 334 316 338 0.95
6 17 0.046 5.2 9.1 1.9 1 22 344 365 344 366 0.91
7 17 0.0012 0.13 14.2 0.4 1 23 452 474 452 474 0.97
8 17 9.7e-07 0.00011 23.9 2.2 1 23 480 502 480 502 0.97
9 17 0.00011 0.012 17.4 0.7 1 23 508 531 508 531 0.92
10 17 2.7e-07 3e-05 25.6 1.2 1 23 542 564 542 564 0.99
11 17 3e-06 0.00033 22.3 1.8 1 23 570 592 570 592 0.99
12 17 1.2e-05 0.0013 20.5 4.0 1 23 598 620 598 620 0.99
13 17 1.8e-05 0.002 19.9 3.8 1 23 626 648 626 648 0.98
14 17 0.023 2.6 10.1 0.5 1 19 654 672 654 676 0.93
15 17 9e-05 0.01 17.7 1.2 1 23 681 704 681 704 0.94
16 17 0.34 38 6.4 0.2 1 23 710 732 710 732 0.96
17 17 0.00016 0.018 16.9 0.3 1 23 738 760 738 760 0.98

Sequence Information

Coding Sequence
ATGGAGGGCAACGGTACCGGCAGCATGGCGGCGGAAACAGCTTACATCAAAACGGAAGTCATAGATGAAGAGATTACAATAAAAGAGGAATTTTTAAGCTATGACATCAGGTCGGAAGACGCCCAGCAAACAGCTGCACCAGACTTGCACACCAGCCCGTGCTTGCTAGGTCTGGAGAATGTGAAACAGGAGCCCTTGGACTTAGAGAACGCTGACTTGAACAATGTTAATGAGGTAGCCATGCATACTAGTCATGCCGTAGAAGATGTTGAGCCAAGGCCGGATTGCACGCAGTCAAATGTAAAAAAAAATGCTCGCATCGGCAAAGGCATGATTCCAGACATCGTCGTGGAAATACAGGTCAACGACCCGCCGGTCAATGACCCCGGACTGCTTGTAGAAGTGAAATTTGAGCCGGTGGACGATGAGGGGGCGGGGGCGCGGGGAGGGGAGGCGCGGGGGGACGGAGAGGCGGGGTCCGACACCACAGTGTGTATCGATACCGCGAAGACAGCCAAGCGAAAAGCGAAGAAAAAAGGCGCAAGCGTTCCTGCGAGCAACCTTCCTACAAGCGACACTCCTACAAGCCAAAGTATCAGCAGCAAAGGGCCTCACATATGTCAGACATGCAACAAGGAATTCAAGAAATCCAACAAGCTAGTTATCCATATGAGGACGCATACGGGAGAGAAACCATACGCCTGCAATATCTGTAACAAGAACTTCTCGTACCCCAACGGCCTGAAGGTGCACCTCCGCACGCACACCGGTGAGAAACCGCACGTGTGTCAATTTTGTGACAAACGCTTCAGGCAATGGAACACTTTGAAGGCTCATGAGCGCATACACACGGGAGAGAAACCATATGTATGCGAAATCTGCAATAGGGGATTTACGCAAAACAGTTTAAAGCAACATATGCTTGTTCATACTGAACTCAAGCAACATTCATGTCCCGTCTGTCAGAAGGAGTTCAAAGATGTTAATAGTTTAAGAAGACATGAGCCGCTTCATAAAGATGAGAAGCCGTATTCTTGTGCCACTTGTAGTAAGAAGTTTGCGGCGGCTCACCATTTGAGGTACCATGAGGTAGCACATGCGCGGAGCGCACAGCCTCGCGAGGAAATTGCCGCGCGAGGCGGCTCGGCTATTGTGGACGTGCCTCGGCCGAGGCATTGCGGCCGCGCGTGCGTTTGCCTCGGGCGAGGCACGTCCACACTAGCCGAGCTGCCTCGCGCGGCAATTTCCTCTCGAGATGGTGCGTCCGGTGTGGACACGCCTAATgAGCTATGTGCGCCTGAAGAGGGACTGAGGACTCGAGAGGCCGCGGCCGCTACCAAGGCTCGTCGGTCTCACATATGCGAAATATGTATGAAGATATTACCAAGAGCGGAATCACTGAAGCTGCATATGCGCACTCACACCGGGGAGACACCCTACAGCTGCGACATCTGTAACAAGTCGTTCAGATACAACAACAGTCTGAGGAGGCATATGACGCTTCACAGCGGGCATACGCCGCACGAGTGCCCAACTTGCGGCAAGCGGTATGCGAACCGGGACGGGTTACGCTCGCATAAAACACTCGCTCACAAAGTGCGCATCGGACCTGTACCAGAGCCTTTCCAATGCGTAATATGTTCCAAAACATTCAAACGAAGGGCCCAGTTAGTGCTGCACATGCGAACACACACAGGAGAAAAACCGTACCCCTGCTCCGTGTGTAATAAGAAGTTTACGTATCTCAAAAACGTAAAGGACCATATGAGAACCCACACCGGGGAGAAACCATACGAGTGCTCCACGTGTAGCAAGCGGTTCTCACACTGGAACACTTTACAGCAACACGAGCGAACACACACCGGTGAGAAACCATTCCAGTGCGATATTTGCAAAAAGAAGTTCAGAATGTTAACACACTTAAAGAGGCACCTACTTGTCCATTCAGATGTGAAGCGATACGCCTGCGGCGTATGCAGGATGGAGTTCAAACATATAGATTACTTAAAAAGACATGAACCGATGCACGATCAGAAATCTTATTCTTGCCAAGTGTGTGAAAAAGTGTTTGCAAGTGCGCGACATTTACAAAACCACGAATATCGATTGCACAGAGCTGTGAAGCGTTACAGTTGTGTGACATGTGCCAAGTCGTTTCTGACTCCGCAGCGGTTGAGGGATCACGAGCTAGTGCACACTGGAGAGAAACCATTCACCTGCAACATCTGTAACAGACAGTTCGCGCTCGAGCGAAATTTGCAGGCACATGGGAAAGTTCACGCGAGGGAGGCAAATGAGGTCAAAAGTGAAGTGACGTTTCCCTGTTCCCAGTGCTCCTTTCTGGCCGTGTCTGAGGATGGATATTGCCTGCCGTGGTCGCCGGTGCTGAGATCGTTTGAGCCGAGAGGGCTCCGGAAGGCGCTCGTGAGTGCCGATCTTGTGAGACGATCGGCAACCGTCGTCGGAGGACTAGAGCCCGTGTATCGCGTGGTTCGTCAAGTAAAACCGTCGTCGGAGGACTAG
Protein Sequence
MEGNGTGSMAAETAYIKTEVIDEEITIKEEFLSYDIRSEDAQQTAAPDLHTSPCLLGLENVKQEPLDLENADLNNVNEVAMHTSHAVEDVEPRPDCTQSNVKKNARIGKGMIPDIVVEIQVNDPPVNDPGLLVEVKFEPVDDEGAGARGGEARGDGEAGSDTTVCIDTAKTAKRKAKKKGASVPASNLPTSDTPTSQSISSKGPHICQTCNKEFKKSNKLVIHMRTHTGEKPYACNICNKNFSYPNGLKVHLRTHTGEKPHVCQFCDKRFRQWNTLKAHERIHTGEKPYVCEICNRGFTQNSLKQHMLVHTELKQHSCPVCQKEFKDVNSLRRHEPLHKDEKPYSCATCSKKFAAAHHLRYHEVAHARSAQPREEIAARGGSAIVDVPRPRHCGRACVCLGRGTSTLAELPRAAISSRDGASGVDTPNELCAPEEGLRTREAAAATKARRSHICEICMKILPRAESLKLHMRTHTGETPYSCDICNKSFRYNNSLRRHMTLHSGHTPHECPTCGKRYANRDGLRSHKTLAHKVRIGPVPEPFQCVICSKTFKRRAQLVLHMRTHTGEKPYPCSVCNKKFTYLKNVKDHMRTHTGEKPYECSTCSKRFSHWNTLQQHERTHTGEKPFQCDICKKKFRMLTHLKRHLLVHSDVKRYACGVCRMEFKHIDYLKRHEPMHDQKSYSCQVCEKVFASARHLQNHEYRLHRAVKRYSCVTCAKSFLTPQRLRDHELVHTGEKPFTCNICNRQFALERNLQAHGKVHAREANEVKSEVTFPCSQCSFLAVSEDGYCLPWSPVLRSFEPRGLRKALVSADLVRRSATVVGGLEPVYRVVRQVKPSSED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-