Paur027388.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352290.1:4730362-4742841[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.013 1.4 10.9 0.1 2 23 160 181 160 181 0.94 2 33 0.48 53 6.0 0.3 3 23 187 207 186 207 0.97 3 33 2.1 2.4e+02 3.9 5.8 3 23 214 235 214 235 0.98 4 33 0.0026 0.29 13.1 0.9 3 20 245 262 243 266 0.94 5 33 0.099 11 8.1 1.4 1 23 273 295 273 295 0.90 6 33 0.0046 0.51 12.3 0.8 1 23 301 324 301 324 0.95 7 33 1.1 1.2e+02 4.8 1.4 2 20 330 348 329 350 0.91 8 33 0.12 13 7.9 1.1 3 23 356 374 354 374 0.95 9 33 0.00094 0.1 14.5 0.4 1 23 380 402 380 402 0.98 10 33 0.0011 0.12 14.3 3.0 1 23 408 430 408 430 0.98 11 33 0.0011 0.12 14.3 3.0 1 23 458 480 458 480 0.98 12 33 0.0011 0.12 14.3 3.0 1 23 508 530 508 530 0.98 13 33 0.0011 0.12 14.3 3.0 1 23 558 580 558 580 0.98 14 33 0.0011 0.12 14.3 3.0 1 23 608 630 608 630 0.98 15 33 0.0011 0.12 14.3 3.0 1 23 658 680 658 680 0.98 16 33 0.0011 0.12 14.3 3.0 1 23 708 730 708 730 0.98 17 33 0.0011 0.12 14.3 3.0 1 23 758 780 758 780 0.98 18 33 0.0011 0.12 14.3 3.0 1 23 808 830 808 830 0.98 19 33 0.0011 0.12 14.3 3.0 1 23 858 880 858 880 0.98 20 33 0.0011 0.12 14.3 3.0 1 23 908 930 908 930 0.98 21 33 0.0011 0.12 14.3 3.0 1 23 958 980 958 980 0.98 22 33 0.0011 0.12 14.3 3.0 1 23 1008 1030 1008 1030 0.98 23 33 0.0011 0.12 14.3 3.0 1 23 1058 1080 1058 1080 0.98 24 33 0.0011 0.12 14.3 3.0 1 23 1108 1130 1108 1130 0.98 25 33 0.0011 0.12 14.3 3.0 1 23 1158 1180 1158 1180 0.98 26 33 0.0011 0.12 14.3 3.0 1 23 1208 1230 1208 1230 0.98 27 33 0.0011 0.12 14.3 3.0 1 23 1258 1280 1258 1280 0.98 28 33 0.0011 0.12 14.3 3.0 1 23 1308 1330 1308 1330 0.98 29 33 0.0011 0.12 14.3 3.0 1 23 1358 1380 1358 1380 0.98 30 33 0.0011 0.12 14.3 3.0 1 23 1408 1430 1408 1430 0.98 31 33 0.0011 0.12 14.3 3.0 1 23 1458 1480 1458 1480 0.98 32 33 0.0011 0.12 14.3 3.0 1 23 1508 1530 1508 1530 0.98 33 33 0.00013 0.014 17.2 1.4 1 23 1536 1558 1536 1558 0.98
Sequence Information
- Coding Sequence
- ATGAATTTATGTAGAGCGTGTTTGTCTTCGGACAAAGAATTGTTTCCGTCTGATGACAATTTCACTTGCAATTATAACTTGCTTACTAATATTAACGTCAAGTATTCTGATGCGAAGCCACAATGTTTTTGCCAAAATTGCATAGAAGCTGTCAACTGTTTCATGGAGTTCAGGAATAAATGTATTTCTGCTGAAAATGCATTGCTCGGTATTTTGGAGCAGGCTGTTAAAACTGAGACTAATAATGTTAAATTGGAAATAAAATGTGAATTTGAAGATAGCACTGAGGCTTATTTTGAGGAGGAGCTACATGACTCCACAGACAATGCTGGTTGTGAGATTAAAAAGGAAGAATGTAATGATGATATTAAAGAAAAAAGGCCTAGTAGACTGTGCAAGAAAAAGAAGACAAAAACTGCAAAGAAGGATGGTTTTCGCACCCGCACAGCCCATGCTCAACTAACTAGCAATAATCCTACTTGTGGATTATGTGGTAAAGAATTTGAAGACGTGGCAACATTAAGCAAGCATGTGGAAGATCATGAAATTGACCACGGCTGCCAGCTCTGCTCCGCCAAGTTCCAGAATCGAGCCGAGCTTTATTCTCACCGTATACTGCACACTGTACACAGTCAGGGTTGCCATTTGTGCAATATTAAATTCAAATCGCACACTAGTCTAGAATTCCATTATAGGAAAATACATTATGGTGAAAAGAACATTACGATGAATTGTAGTTTCTGTCCAAAAAAGTTTAGTAATCCTAGAAAATTATCAAAACACATATGGAATATGCACGGTACCAAGAACCAGGAATACACCTGTGATATTTGTTCCAAAAAATTCGATAGTAGGGCAAGAATGAGGTTCCACTTGCTATCGCACACCGACGCCAAGCCTCACGTCTGCGACCTGTGCGGGTACAGCTCCAAATACTCCTCTGGTTTATCGGCCCACACCATTCGAAGGCACGCGCCCGCCAAGTGTATCTGCAAGTTTTGCGGCAGCGCATACGCGGACGCAGAGAAACTGGCCAAGCACTCGTGCTCCGACACCAGCCAGATATGTCCCGTTTGCGGCAAGAACGTTCGCCGGGGGCTGCACCGCCACATGCGGTCGCACACGTCGGAGCGCCACTACAAGTGCGAGCGCTGCCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGTGCGAGCGCTGCCCGCCACGTACAAGAGCCGCGCGGCCCTGAACGTGCACCGCGACAAGCACGACAACAACCCCCGGCACGAGTGCGAGTACTGCCACGTGAGGTTCTATAACGCGTCTGTGTTGGTCAAACACCGGCGAGTGCACACCGGTGAGAAACCATATGCCTGCACCAAGTGCGACATGCGCTTCACCGGCGGCCACAACCTCAAGGTGCACATGAAGGTGCACGGGGAGCACCTCGTCAACAAGAGGAACAAGGAGCTAGAGGATGAATAG
- Protein Sequence
- MNLCRACLSSDKELFPSDDNFTCNYNLLTNINVKYSDAKPQCFCQNCIEAVNCFMEFRNKCISAENALLGILEQAVKTETNNVKLEIKCEFEDSTEAYFEEELHDSTDNAGCEIKKEECNDDIKEKRPSRLCKKKKTKTAKKDGFRTRTAHAQLTSNNPTCGLCGKEFEDVATLSKHVEDHEIDHGCQLCSAKFQNRAELYSHRILHTVHSQGCHLCNIKFKSHTSLEFHYRKIHYGEKNITMNCSFCPKKFSNPRKLSKHIWNMHGTKNQEYTCDICSKKFDSRARMRFHLLSHTDAKPHVCDLCGYSSKYSSGLSAHTIRRHAPAKCICKFCGSAYADAEKLAKHSCSDTSQICPVCGKNVRRGLHRHMRSHTSERHYKCERCPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTVRALPATYKSRAALNVHRDKHDNNPRHECEYCHVRFYNASVLVKHRRVHTGEKPYACTKCDMRFTGGHNLKVHMKVHGEHLVNKRNKELEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -