Paur031206.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352311.1:13871815-13882102[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 58 9.1e-05 0.01 17.7 1.6 1 20 19 38 19 40 0.95 2 58 1.8 2e+02 4.1 0.4 7 23 53 69 53 69 0.97 3 58 0.0002 0.022 16.6 3.0 1 21 76 96 76 101 0.94 4 58 9.1e-05 0.01 17.7 1.6 1 20 112 131 112 133 0.95 5 58 1.8 2e+02 4.1 0.4 7 23 146 162 146 162 0.97 6 58 9.1e-05 0.01 17.7 1.6 1 20 169 188 169 190 0.95 7 58 9.1e-05 0.01 17.7 1.6 1 20 226 245 226 247 0.95 8 58 9.1e-05 0.01 17.7 1.6 1 20 283 302 283 304 0.95 9 58 1.8 2e+02 4.1 0.4 7 23 317 333 317 333 0.97 10 58 9.1e-05 0.01 17.7 1.6 1 20 340 359 340 361 0.95 11 58 0.0002 0.022 16.6 3.0 1 21 397 417 397 422 0.94 12 58 9.1e-05 0.01 17.7 1.6 1 20 433 452 433 454 0.95 13 58 1.8 2e+02 4.1 0.4 7 23 467 483 467 483 0.97 14 58 9.1e-05 0.01 17.7 1.6 1 20 490 509 490 511 0.95 15 58 9.1e-05 0.01 17.7 1.6 1 20 547 566 547 568 0.95 16 58 9.1e-05 0.01 17.7 1.6 1 20 604 623 604 625 0.95 17 58 9.1e-05 0.01 17.7 1.6 1 20 661 680 661 682 0.95 18 58 1.8 2e+02 4.1 0.4 7 23 695 711 695 711 0.97 19 58 9.1e-05 0.01 17.7 1.6 1 20 718 737 718 739 0.95 20 58 0.0002 0.022 16.6 3.0 1 21 775 795 775 800 0.94 21 58 9.1e-05 0.01 17.7 1.6 1 20 811 830 811 832 0.95 22 58 1.8 2e+02 4.1 0.4 7 23 845 861 845 861 0.97 23 58 9.1e-05 0.01 17.7 1.6 1 20 868 887 868 889 0.95 24 58 1.8 2e+02 4.1 0.4 7 23 902 918 902 918 0.97 25 58 9.1e-05 0.01 17.7 1.6 1 20 925 944 925 946 0.95 26 58 1.8 2e+02 4.1 0.4 7 23 959 975 959 975 0.97 27 58 9.1e-05 0.01 17.7 1.6 1 20 982 1001 982 1003 0.95 28 58 1.8 2e+02 4.1 0.4 7 23 1016 1032 1016 1032 0.97 29 58 9.1e-05 0.01 17.7 1.6 1 20 1039 1058 1039 1060 0.95 30 58 1.8 2e+02 4.1 0.4 7 23 1073 1089 1073 1089 0.97 31 58 9.1e-05 0.01 17.7 1.6 1 20 1096 1115 1096 1117 0.95 32 58 1.8 2e+02 4.1 0.4 7 23 1130 1146 1130 1146 0.97 33 58 9.1e-05 0.01 17.7 1.6 1 20 1153 1172 1153 1174 0.95 34 58 1.8 2e+02 4.1 0.4 7 23 1187 1203 1187 1203 0.97 35 58 0.00062 0.069 15.0 1.9 1 20 1210 1229 1210 1231 0.95 36 58 1.8 2e+02 4.1 0.4 7 23 1244 1260 1244 1260 0.97 37 58 9.1e-05 0.01 17.7 1.6 1 20 1267 1286 1267 1288 0.95 38 58 1.8 2e+02 4.1 0.4 7 23 1301 1317 1301 1317 0.97 39 58 9.1e-05 0.01 17.7 1.6 1 20 1324 1343 1324 1345 0.95 40 58 1.8 2e+02 4.1 0.4 7 23 1358 1374 1358 1374 0.97 41 58 9.1e-05 0.01 17.7 1.6 1 20 1381 1400 1381 1402 0.95 42 58 1.8 2e+02 4.1 0.4 7 23 1415 1431 1415 1431 0.97 43 58 9.1e-05 0.01 17.7 1.6 1 20 1438 1457 1438 1459 0.95 44 58 1.8 2e+02 4.1 0.4 7 23 1472 1488 1472 1488 0.97 45 58 9.1e-05 0.01 17.7 1.6 1 20 1495 1514 1495 1516 0.95 46 58 1.8 2e+02 4.1 0.4 7 23 1529 1545 1529 1545 0.97 47 58 9.1e-05 0.01 17.7 1.6 1 20 1552 1571 1552 1573 0.95 48 58 1.8 2e+02 4.1 0.4 7 23 1586 1602 1586 1602 0.97 49 58 9.1e-05 0.01 17.7 1.6 1 20 1609 1628 1609 1630 0.95 50 58 1.8 2e+02 4.1 0.4 7 23 1643 1659 1643 1659 0.97 51 58 9.1e-05 0.01 17.7 1.6 1 20 1666 1685 1666 1687 0.95 52 58 1.8 2e+02 4.1 0.4 7 23 1700 1716 1700 1716 0.97 53 58 9.1e-05 0.01 17.7 1.6 1 20 1723 1742 1723 1744 0.95 54 58 1.8 2e+02 4.1 0.4 7 23 1757 1773 1757 1773 0.97 55 58 9.1e-05 0.01 17.7 1.6 1 20 1780 1799 1780 1801 0.95 56 58 1.8 2e+02 4.1 0.4 7 23 1814 1830 1814 1830 0.97 57 58 7.1e-05 0.0079 18.0 4.2 1 23 1837 1859 1837 1859 0.98 58 58 3.8e-05 0.0042 18.9 1.8 1 23 1865 1888 1865 1888 0.95
Sequence Information
- Coding Sequence
- ATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCCGCCTCGTCGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGATGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGATGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACGTGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAATCGTTCCTCATGAAGCAGCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCCGCCTCGTGGCGCACCGGCGCGTGCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGAAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAAACGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTATGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCGTGAGTGTCGTCACATGTCGGTCTTACCTATACACTACAGGCAAAACGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGGCGCGTTCACAGCTCGCAGCGCGCGACGTACGTGTGCGCCGTGTGCGGCAAGCACTTCAGCACGCACAGCAACCGCCAGCGGCACATGTTCATTCACACCGGCCTAAAACCATTCAAGTGCGAAATGTGCGGGAAAAGCTTCAAGCACGCGAGCGAGAAACGCGCGCACATCACTTACGTACATCTCAAGAAGCCGTGGCCCAAACGAGCGCGCGGCAAGCGCCGGGACTCCAGGCAGGTCGGTAGCTCATGA
- Protein Sequence
- MKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMMQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMMQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKSFLMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSKRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFVSVVTCRSYLYTTGKTFRMKQRLVAHRRVHSSQRATYVCAVCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKSFKHASEKRAHITYVHLKKPWPKRARGKRRDSRQVGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -