Paur024297.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352295.1:13656233-13669131[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-08 9.7e-05 23.4 0.0 5 41 2 39 1 42 0.95 2 2 4.7 6.1e+03 -1.5 0.0 28 39 203 214 200 218 0.87
Sequence Information
- Coding Sequence
- ATGCTGCAACTAGCTTGTGAAGCAGTTGCTGCAAAACAAATAACAACAAGAGACGCTGAACGTCAGTTTGGCATCCCGCGGAGGACAATAGCTAATAAGGTAAATCAACGGCACATGAAACCCATGGGACGGCCTACTTGCTTAACTGAAATAGAAGAAAATAAAATAGTAAAAGCTCTAATAGCTGCCGCCGACTTCGGGTCGCCGCTAACAAAACTCGATCTGCAGTTAATTGTTCTCGAATACTTAACAAAAAACTCTAGACAAACTGTTTTTAACGGAAACCTGCCTGGCAAAGATTGGATTCAAGGTTTTTTGAGGCGGCATGCAAATAAATTAACTGTAAGAATGACTCAAAACATATCTAAGGCTCGTGCAGCAAAAGGTGAAGAAGAAATTGCTAATTATTTCATCAATTTAAGAGAAACTTTAGAAAACGTACCCCCTGAAAATATTGTAAATTTAGACGAAACGAATCTCTCAGATGACCCAGGCTCTGCTAAAGGCCGCCTCCGGTGTACTAACGTCAACCAAGACAGGCTCATTGTGGAAAGGGCACGAGCAGATAGATTCGTGAATACGACGCAGATCGCTGCTCAATTACAAATATCTAACAGCACAGTAAGGCGAAGACTGAATGAGAGTGGTCTGAAGCATAGGATACCGGCCAAGAAGCCAGTTTTAACACAAAGGCACAAAGATCTCCGGTTAGCATTCGCGGCAAGATACCTTAACTACGACTTCAGCAAGAACGACGAAGATGGTGATCTGAGTGTGGATGAGGAATCATCTCCAGCTCCAGTGATATCCCCGATCGTTTCAGCTACTGAATCAGCTATGCTCCTGACGACATACAGTGCTGAACCGGCGCACCTCCCATTACCACCTGTTTTAACTGGCACACAAACCACACCACCATCAAATTCTGGTGCTGTACAGAACGACGAAGATGATGACCTGAGTGCGGATGAGGAATCATCTCCAGCTCCAGTGATATCCCCGATCGTTTCAGCTACTGAATCAGCTATGCTCCTGGCGACAACAATTGCTGAACCGGCGCATCTCCTATTACCACCTTTTTTAACTGACAAACAAACCACACCACCATCAAATTCTGGTGCTGAAATATCTCCACAGCTAGTCCCATCCCCTTCAGAAAATGAAGAAAAGAAGATACCTGCCAAAAAAAATGAAGAGGAGAAGATACCTGAAAAAAAGAAGATACCTGCTAAAGAAAATGAAGAAAAGAAGATACCTGTAAAAAAGAAGATACCTGTAAAAAAAGAAGATACCTGCTAA
- Protein Sequence
- MLQLACEAVAAKQITTRDAERQFGIPRRTIANKVNQRHMKPMGRPTCLTEIEENKIVKALIAAADFGSPLTKLDLQLIVLEYLTKNSRQTVFNGNLPGKDWIQGFLRRHANKLTVRMTQNISKARAAKGEEEIANYFINLRETLENVPPENIVNLDETNLSDDPGSAKGRLRCTNVNQDRLIVERARADRFVNTTQIAAQLQISNSTVRRRLNESGLKHRIPAKKPVLTQRHKDLRLAFAARYLNYDFSKNDEDGDLSVDEESSPAPVISPIVSATESAMLLTTYSAEPAHLPLPPVLTGTQTTPPSNSGAVQNDEDDDLSADEESSPAPVISPIVSATESAMLLATTIAEPAHLLLPPFLTDKQTTPPSNSGAEISPQLVPSPSENEEKKIPAKKNEEEKIPEKKKIPAKENEEKKIPVKKKIPVKKEDTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -