Paur004197.2
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352310.1:12156667-12158676[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-10 1e-06 29.8 0.0 3 38 12 49 10 55 0.89
Sequence Information
- Coding Sequence
- atgccaaaaacaccaaaagtacaatatagaaaagaaaatttgcagaatgcgatcaaagctgttcaagatgctgacaacaagttgtctacaagacaaattgctgaaaattacggTGTTCCAAGGACCAGTCTTCGGTATTACATTGAAAATCCCGGGCATAAAACTAGTCTAGGGCCATCACCGGTATTAACTGTTTCCGAAGAAAGTCAACTAGAGGAATGGATAATAATCTCGGCCAGAAAAGGGTTTCCTCGAAATAAAGAAGATATTTTAGATACAGTGCAAAAGTTTCTAGTGGAAAATCCTCGTCCTAATTTATTTACAAATAATAGACCCGGTGATGGTTGGTGGAAGGCATTTTTGAAAAGACATCCGAGGTTGACAATAAGAACATCAGAAGGAGTATCAAAAGCAAGTTCCTATGTCTCGGAAAAAGATATAAGAGGGTGGTTTGCTGAAATCAGCGATTATGCTAAAGAAATAGACTTGACTCCCATTTTAAATGATCCAAATCGTATTTTTAATGCAGATGAAACAAATTTCCAAATTTGTGTTAAAACTGGCCAAGTGTTAGCGGAAAAAGGTGCTAAAAATGTATATAATATTGAACAATCTCAAGCCAAAGAATCTATAACAGTTTTGTTCACCTTTTCTGCCGCAGGACAAGTCTGTTGTCCGTTCGTTATTTATCCTTATCAAAGAATGCCTATCAAAAAAATTAGCGATTCTGTACCGGACGGATGGGGATTCGGAAAGTCTGACTCAGGATGGATGACTACGGAAACTTTTTATGAATTTATAGCAAATGTGTTTCATCCCTATCTGGTCAGCAATAATGTCAAGCTTCCAGTTATACTCTTTGTGGACGGCCATAAAACGCATTTAAATTTCCATTTGAGCCAACTTTGCACTCACCTTCAAATTGAGTTAATTGCATTGTATCCGAATGCTACAAGAATCCTTCAGCCCGCCGATGTAGCTGCTTTTAGACCTCTAAAGATGGGATGGAAAAAAACTGTCAGAAAATGGCAAAATGAGAATAATAATCAAGGCGTGACTAAATTGAATTTTGCTACTGTGCTTAATGAAACTGTCATAACCAGTTTAAGGCCTGAAATTTTAGTGAACGGTTTTAAAGCCTGTGGCCTGTATCCATTTAACCCGGACGCGATTGATTATAATAAATGCCTCGGAGACAAGAACGAGAATGTCACATCGCAAAAAAATAAAATGATACCTGACTCTGCAATGCTAAGTTACGCAAAATTCAAAGAGATCATCGGAACAACTCTTTCTAACGACTTTGAAAACCGTAGTCAGAATTTGCCTTGTCAAAAGAGTAATGAACACTTGAATAAGTTGTTCCAAATATGGCAAGCATATCACGACGTGGAAGTTATGAGTACCACTAAAGAAGGAATAGACTCTTCAGTTGTTACATCGCAAAAAGGCGACAAAGCAGTACAAGTAGTAGATTTTCCTAATGTATCACCGCAAAGAAATGAAGAAGAGTGTGTTGCAGAGATAAATGACTTCAGTGAGCTAGCTTTAAAGACACGAGACTTTAAAGAAATAGAAGGTGCTTTATCTCTTGATATTACTTCCACCGTACCCGAGAAGTCAAAATTTGAGTCTACGCCTTCTGTGGTCACGGTGAAGTCAACTCTTGAGCTGTCAAGTCCACAAAGAAATGAACAAGGATGCGTTGAAGAAGATAGTGAGCTAGTTTTTCAAATACCAGACACATTTAATGAAACAGAAGATGCTTTATCACTAGATTCACTAGACCTTACTTCTCCTATACCCGGAACGTCCAAACCTGTCATGGTACAGTCGTCTGGTCTGTTGCCAAGTCCTAAAATTGTAAAAAGAAAATGTTCTTTAGGAGAATATTTAGCATACCCAGAGACGCCAGTAAGAAAATGGAAAAGGAAAACTGAAAGACAACCATATGCCATTAGCTCCCAAAATTATAAAGCTGCTCTACATTCTAAACAAGTAGAAAAATAA
- Protein Sequence
- MPKTPKVQYRKENLQNAIKAVQDADNKLSTRQIAENYGVPRTSLRYYIENPGHKTSLGPSPVLTVSEESQLEEWIIISARKGFPRNKEDILDTVQKFLVENPRPNLFTNNRPGDGWWKAFLKRHPRLTIRTSEGVSKASSYVSEKDIRGWFAEISDYAKEIDLTPILNDPNRIFNADETNFQICVKTGQVLAEKGAKNVYNIEQSQAKESITVLFTFSAAGQVCCPFVIYPYQRMPIKKISDSVPDGWGFGKSDSGWMTTETFYEFIANVFHPYLVSNNVKLPVILFVDGHKTHLNFHLSQLCTHLQIELIALYPNATRILQPADVAAFRPLKMGWKKTVRKWQNENNNQGVTKLNFATVLNETVITSLRPEILVNGFKACGLYPFNPDAIDYNKCLGDKNENVTSQKNKMIPDSAMLSYAKFKEIIGTTLSNDFENRSQNLPCQKSNEHLNKLFQIWQAYHDVEVMSTTKEGIDSSVVTSQKGDKAVQVVDFPNVSPQRNEEECVAEINDFSELALKTRDFKEIEGALSLDITSTVPEKSKFESTPSVVTVKSTLELSSPQRNEQGCVEEDSELVFQIPDTFNETEDALSLDSLDLTSPIPGTSKPVMVQSSGLLPSPKIVKRKCSLGEYLAYPETPVRKWKRKTERQPYAISSQNYKAALHSKQVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410228;
- 90% Identity
- iTF_00410229;
- 80% Identity
- -