Paur024693.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352295.1:22887222-22889045[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-10 2.3e-07 31.8 0.0 2 38 19 55 18 59 0.94
Sequence Information
- Coding Sequence
- ATGCCACGGGTTTATAAAAGAGCGATGGGAGCTCGTAATTATAAAAATTATTCCGACGAAACATTGCAAGAATGCCTTAGATCTATAGAAAACGGTGAACTTACCCAAAGAAAGGCCAGTGAGAAATATGGTATTCCACGTAGAACTATAATAAATCATTTGAAACTCGTGCGAACCAGAACACCATGTCGACCACCTGGTGCCCCATCTACATTTTCAAAAGAAGAAGAAAAGTCATTTGTGGATTGCATTATAAAACTAAGTGAGCATGGTTTTCCTTTGACGGTCTTTGATCTTCGCATAGTAGTAAAGTCGTATTTAGAAAAAATAGGCCGAATAGTTACTAAGTTCAAAAATAACTGTCCAGGTGAAGAGTGGCTAGGAAGTTTTTTAAAACGAAATCCTATTTTATCACAGAGGTTTGCGGCAAATATAAAACGAAACAGGGCTGCCGTTGACAAAGATATTATCACTGCTTACATGCAAGAATTAGAAAAAATGGTAAAAGATGTGCCACCTGAGAATATATGGAATTTCGATGAGACGAATCTGTCGGACGATCCTGGTCAAAAAAGAGTAATCACGAAGCGAGGGACTAAATATCCAGAAATAATAAGGAATTCCTCAAAAAGTGCGATTTCCATCATGTTTTGTGGAAATGCTGTGGGAGAATTACTCCCGCCGTATACTGTGTATAAGGCCAAACAACTCTGGAATACATGGACTGAGAATGGGCCGAAGAATGCTAGATACAATACCAGTCCTTCAGGTTGGTTTGATATGAATATATCCAATGACTGGTTCTTCAGGCTCATGCTACCGAGGCTCAAGAAGCTTGACGGCATCAAAGTTGTTATAGGGGACAACTTGTCATCGCATATTTCAGTGGATGTCCTTAACGCATGTAAGCAACACAACATCAGGTTTATTTGCCTTCCTCCCAATAGCACTCATTTAACCCAGCCTCTAGACGTCGCGTTTTTTGGACCCATGAAGTTGGCGTGGAGAAACATTCTGTCTCAATGGAAGACAACTGAACAAGGCAGACGAGATACAACCATTCAAAAAAGTAGCTTCCCAATGTTACTGAACAGACTCCTGGAAGCTTTAGCAGTAACACAGAATGTGAATTTGATTTCCGGCTTCCGGAAATGTGGAATATCTCCATTTGATATCAAACCGTTATTAGAAAGATTGCCTAAACCCTCTGACTCGTCTGCTATTCAAGATTCTTTTCTCGAAACGCTTGAAGCTAAGAGGGCAGATTGGGTAAAAGGTGGCACTACAAGAAAACGTCGTACAAAATTAAATGTAACACCTGGAAAGAGTGTGACTGAAGAGTTAGATTCTATTGTTGATGACAAAGAAAACGAAGAGCCACAGCCAACTACTTCAACACGTGTTCGTCGCAGAATTGATAGTGAGAGTTCCTATGCGGAAAGTGTTAACATGTCTATTCACGACTCCTCTTCTGATCTGGCTTCACTCGGTGACTTAGTAATAGATAATGAACCGGAAGCTAGTACTCTGACCAAAGAACCTACTAAAAGTACTAGAAATTTCAAGTCACTTGTGAAGGCTGTGGGGCAATATGTGGTGTTTAAATATGAAGGTGAATTATTTCCCGGTGTGATTACAAAGATTTCTGCAAAGGGAGCAAATATATCCTCTATGAAAAGGTCCCTGAAGAGCTGGAAGTGGCCAAAACCGAAGGATGAAATTCATTATGATTGGAAAGAAGTACTAGGATGCATAAATCCACCAAAAAAAAACGGACGACGGGAGATTTATTCTATTCCGGAACTGAGCCAATTTTGGGGATAG
- Protein Sequence
- MPRVYKRAMGARNYKNYSDETLQECLRSIENGELTQRKASEKYGIPRRTIINHLKLVRTRTPCRPPGAPSTFSKEEEKSFVDCIIKLSEHGFPLTVFDLRIVVKSYLEKIGRIVTKFKNNCPGEEWLGSFLKRNPILSQRFAANIKRNRAAVDKDIITAYMQELEKMVKDVPPENIWNFDETNLSDDPGQKRVITKRGTKYPEIIRNSSKSAISIMFCGNAVGELLPPYTVYKAKQLWNTWTENGPKNARYNTSPSGWFDMNISNDWFFRLMLPRLKKLDGIKVVIGDNLSSHISVDVLNACKQHNIRFICLPPNSTHLTQPLDVAFFGPMKLAWRNILSQWKTTEQGRRDTTIQKSSFPMLLNRLLEALAVTQNVNLISGFRKCGISPFDIKPLLERLPKPSDSSAIQDSFLETLEAKRADWVKGGTTRKRRTKLNVTPGKSVTEELDSIVDDKENEEPQPTTSTRVRRRIDSESSYAESVNMSIHDSSSDLASLGDLVIDNEPEASTLTKEPTKSTRNFKSLVKAVGQYVVFKYEGELFPGVITKISAKGANISSMKRSLKSWKWPKPKDEIHYDWKEVLGCINPPKKNGRREIYSIPELSQFWG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01133668; iTF_01072387; iTF_01072386;
- 90% Identity
- iTF_01133668;
- 80% Identity
- -