Paur025282.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352295.1:32672481-32674424[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-11 3.6e-08 34.4 0.0 1 37 16 53 16 60 0.89 2 2 5.1 6.7e+03 -1.7 0.0 7 18 76 87 73 88 0.88
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTATGCGAAAAAAGGGACGAGAACGGGACAAGTAGACGAAGATAGCATGAAATCTGCGATAGACGAAGTTTTGAATAAAACCTTATCTATCAGAAAGGCTGCGCAAAAATATGGCGTCAAACCAACTACGCTCGAAAGTCGCTTGACGAAGTTACATAAACAAGCAGCTACTGAAGACAGACATAGTAAGCTAGCCTTCGGAGACGACGACTTTGCAGCTGTAAGCGTATACCAATCCGGGTCCACGTCAGCTCCAGAAGAGATCGACGAGATAGGTAATGTTGAAGATGTGGAACAACAAGATTTACCACCAGGGTTGGCCCCTACATCAGCTTCTTTTCCGCCACAGTCAGAATCCGCACAAGGTGAGCAGTCTATTTCAACAGCGAGTCAAGGTGCCAATGTATCGGAAACGGAGCTTACTCAAGAAGATCTCCTAGAGAGCTTAGTTCCTGTTTCACCTTCCTTACATAGATCTACAACTCCACCGGCGACTTTACCTGCTGGAGGACTAATAACTCCAGAAGTTATCCGGCCTTACCCTATAGTAGACAGAACTGAGTCTAAAAAGTCGAGAAAAGGGAAACAGCAAGGAAAGTCGAGAATATATACAGATACTCCGGAGAAAATAAGACTAGAAGAAATAGAGAAAGCAAAACAGTTGAAGAAGCAAGAGCAAGAGATAAAACAAAAGGCTAAGGAGATGAAGCGAGCATTAAATTTAGTAACCGCCAACACCAATCCAAAAAGACAGAAGAAAACTGTAAGGACAACTAAATCAAAGAGGCAAAAGAAAACTTTCAAGCCTGTCAGTGAGGACGAGTCTGATTCTGAGGATGAAACTAATATCAGTTTAAGAGAAAGTTCTTGTTCTCCCATCGAAGAAGCGTCCGAGCAATTGGATGTTCAAGATAAAACTCCAGTTATGTCTATGAACATTAACCAAGGATGTTTCGTGCTAGTCAAATTTGCTAAAAAAAATACTGTTTTATATTATGTTGGGCAAGTGCTTATAAAGTACAGTCCTATTGAATACGTAGTTTCATTTATGAGGAAGAAGCCTGGTTCCTGGAAATTTGTTTTTCCCACCACCAAGGATGAGGGGAGTGTCAATATAACGGATGTGGTACATATACTGACACCATCAAAATCTGCTTTGACAGCGAGAacgtcccacatttatagcttcgagaaagacttatctatgtatGCTGTCGGATAG
- Protein Sequence
- MPRKYAKKGTRTGQVDEDSMKSAIDEVLNKTLSIRKAAQKYGVKPTTLESRLTKLHKQAATEDRHSKLAFGDDDFAAVSVYQSGSTSAPEEIDEIGNVEDVEQQDLPPGLAPTSASFPPQSESAQGEQSISTASQGANVSETELTQEDLLESLVPVSPSLHRSTTPPATLPAGGLITPEVIRPYPIVDRTESKKSRKGKQQGKSRIYTDTPEKIRLEEIEKAKQLKKQEQEIKQKAKEMKRALNLVTANTNPKRQKKTVRTTKSKRQKKTFKPVSEDESDSEDETNISLRESSCSPIEEASEQLDVQDKTPVMSMNINQGCFVLVKFAKKNTVLYYVGQVLIKYSPIEYVVSFMRKKPGSWKFVFPTTKDEGSVNITDVVHILTPSKSALTARTSHIYSFEKDLSMYAVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00831111;
- 90% Identity
- iTF_01527014;
- 80% Identity
- -