Paur043369.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352293.1:34197344-34199481[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-12 1e-08 36.2 0.0 2 39 17 55 16 59 0.89
Sequence Information
- Coding Sequence
- ATGATGCGGAATTATAAGAAAAAAAACACAAGATGTACAACAGTAAATGAAAATGATATGGTACAGGCAATAAAAGATGTTTTAGAAGGAAAATTGTCGTATAGAAAGGCAGCGGATAAACACAATGTTAAAGCTTCAACTTTGGAAAGTCGAGTAAAGAAAATAAAGAACAAAAGTGATGAGGTTGGCCCGAACCACACATATCAGTCTAAATTCACAAGTTACCAAGTTTTTTCTAACGATGAAGAGTCAGAGTTGATTGAATACATTGAAGAAAGTTCGAAAATGCATTTCGGGCTCACACTACTCCAAGTCAGAGCACTGGCATATCAGTATGCCAAAGCATTGAAACGAAAATATCCACCTAAATGGGATGAAACTGGATTGGCAGGTAAAACGGTTACCATTTACAATATCCCAAAAATTGCCAAGCTAGCATACTTGGAGGCGTTCACTGCTAAGAATATCACGAGTGCATTTAGTTCGCCAGGGATATGGCCTTTCAACCAGTTGGCATTCAGCGACGAAGATTTTGCACCAATTAAGGTGTATACGTCTGGTAATAGCTCGATTACTGACCAACAGATGCAAGAACCGCAGGCCTCTAGTAACGAGTTACAACAAAATGTTCACACAGAAGCAGCTACTACACCTCAGACCCCCCCGCAAGTAACCTCTGAAACACCTGAACTTCAAGTAAGATCTACACCAGAAATTGAGGTCACTCAGAAAACTCCTCCTCGAGCACATGAAGTTCAATCTGTGGCTTCTGGGTCACAGGAAAATCCAAGTCCAATTACACCAGCAATAATTCGGCCTTATCCTACGGCTGAAAAAAAGAAAAAAGCGGTTAAGGGAAGACAACCAGGAAAATCTAGAATTTACACCGATACACCTGAAAAAAATAGACTGGAAGACCTGCATAATGCAAAGCAATTAAAGAAAATAGAACAAGAAAGAAAAGCTCAAGCGAGAGAAATAAAACGCACTCTAAAACTTACCGCACAATCAAAGCCTAAAAAAGCGAAAAAGAAAAAAGAAGAAAGCAGTGATTCAGAGTCTGAAAAATCGGAAGTTAGTCTGCAGGAAAGTTCGACATCTGTATTAGATAGTTCTTCAGAAGGAGAAGATTATGATGCTGCTGTATTGCCTGAAACGATTAAGGATAATTGTTTTATATTGGTGAAATTTGCAAAAAAGAAGTCGATTGTCTATTACGTAGCAAAAGTCATCAACCATTATTCTGAAAGGGAGTTAAAGGTCTCGTACTTGAGAAAAAAACCAGGATTGTCCTGGTCGTTTGTGTTTCCAAATATTGCAGACGAACACAGCGTGAACATTTCTGATGTCGCATTAATTCTTCCTGACCCGAAATCTCCAGGAGCCTCTACGGCCAGAACCTCGAGATTATACACATTTCCTATTGATATGACTCGATTTAATGTCCAGTAA
- Protein Sequence
- MMRNYKKKNTRCTTVNENDMVQAIKDVLEGKLSYRKAADKHNVKASTLESRVKKIKNKSDEVGPNHTYQSKFTSYQVFSNDEESELIEYIEESSKMHFGLTLLQVRALAYQYAKALKRKYPPKWDETGLAGKTVTIYNIPKIAKLAYLEAFTAKNITSAFSSPGIWPFNQLAFSDEDFAPIKVYTSGNSSITDQQMQEPQASSNELQQNVHTEAATTPQTPPQVTSETPELQVRSTPEIEVTQKTPPRAHEVQSVASGSQENPSPITPAIIRPYPTAEKKKKAVKGRQPGKSRIYTDTPEKNRLEDLHNAKQLKKIEQERKAQAREIKRTLKLTAQSKPKKAKKKKEESSDSESEKSEVSLQESSTSVLDSSSEGEDYDAAVLPETIKDNCFILVKFAKKKSIVYYVAKVINHYSERELKVSYLRKKPGLSWSFVFPNIADEHSVNISDVALILPDPKSPGASTARTSRLYTFPIDMTRFNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657108; iTF_00658291;
- 90% Identity
- iTF_00657108;
- 80% Identity
- -