Paur032527.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352315.1:18789478-18790434[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-14 7.7e-11 43.0 0.1 1 41 42 82 42 86 0.95
Sequence Information
- Coding Sequence
- ATGGCCCCTACCAAGAAATCGCAAAATGATGTAGAAGACAAAAGGAAAAAAGAAAAAGACAGAAAAAAGAAACAGAAATTAAGAAAAATCATCAGAAAAGAAAAAAGAAGACATTTTCAGTATACAGAAGAAGCATTAGCACAAGCTCTTAATGCTATAAGGACTGAAAATATGGCCATAAGAGAAGCATGTCGTAAATATGGTGTACCTCGTGCCACAATCCAAGATAGGCTTTCGGGTAGGATGGTAGAAAAGCCTCGCAAAGTAGGTCCAGAACCTTTATTAGGCTTTAATGGTGAACAGAAAATTGTAGACTGGATTATAAACTTGGCAAAGTGTGGGATACCTGTGAATAAGCAACAATTGCTGGAAACAGTGAAAAACATTATTAAAGACATGGGAAAGGCAGAAAAACTTCCTGAAGGAAAAGGACCTGGACAAACATGGTATCAAAATTTTCTTCGGAGGCATCCAGAAATCAGTGTTCGTGAACCTGAAAGTATTAATAAAGCTAGGGAATCAGTCAAAGAGAGCTCGATCAGGAAATGGTTTGCAGAACTGGAATCTTTTATTGCTGAAAGAAGATTAGAGGATATGATGAAAGATCCTGACCGAGTACTAAATGGGGATGAAACTGGAGTATCTTTATGTCCATCCACAGGAAAAGTGTTAGCACCTAAGGGTTACAAAAACGTTTATACCGTAAAAAGGGGCAACGAAAAAGAAAATCTTACTGTCCTCATAACAATGACTGCATCGGGAAAAATGTGTCCCCCGCTCGTTGTGTTCCCGTACGTAAGACCACCGAAAGCAGTGGTAGAAAACATGCCGGAGGGATGGGTTATAGGAAAAACGGAATCCGGCTGGATGCGGTCCGACGTTTTCTACGAATATATAGCAAACGACTTCAATAGCTGGCTAGATAAAAGCAAAATAAAAATATTAAACATATTATGA
- Protein Sequence
- MAPTKKSQNDVEDKRKKEKDRKKKQKLRKIIRKEKRRHFQYTEEALAQALNAIRTENMAIREACRKYGVPRATIQDRLSGRMVEKPRKVGPEPLLGFNGEQKIVDWIINLAKCGIPVNKQQLLETVKNIIKDMGKAEKLPEGKGPGQTWYQNFLRRHPEISVREPESINKARESVKESSIRKWFAELESFIAERRLEDMMKDPDRVLNGDETGVSLCPSTGKVLAPKGYKNVYTVKRGNEKENLTVLITMTASGKMCPPLVVFPYVRPPKAVVENMPEGWVIGKTESGWMRSDVFYEYIANDFNSWLDKSKIKILNIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00008830;
- 90% Identity
- -
- 80% Identity
- -