Pscu012755.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- -
- Assembly
- GCA_958295655.1
- Location
- OY282452.1:8392526-8395949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.012 0.61 10.6 0.0 3 23 178 199 177 199 0.94 2 14 0.72 36 5.0 3.1 2 23 249 271 248 271 0.96 3 14 0.0069 0.35 11.4 3.0 3 23 286 307 284 308 0.93 4 14 0.11 5.6 7.6 0.2 1 22 317 339 317 341 0.80 5 14 0.14 7.3 7.2 2.3 1 20 395 414 395 416 0.90 6 14 0.02 0.99 10.0 1.6 2 19 447 464 446 467 0.93 7 14 0.26 13 6.5 0.8 1 23 503 526 503 526 0.96 8 14 0.021 1 9.9 0.1 1 23 622 646 622 646 0.95 9 14 0.54 27 5.4 0.3 2 13 662 673 661 674 0.88 10 14 0.015 0.77 10.3 0.0 1 23 772 795 772 795 0.95 11 14 1.8 92 3.8 1.1 1 23 842 865 842 865 0.96 12 14 0.078 3.9 8.1 1.1 1 23 871 893 871 893 0.99 13 14 0.0011 0.054 13.9 0.4 3 23 903 923 901 923 0.97 14 14 0.019 0.98 10.0 4.2 1 23 930 953 930 954 0.97
Sequence Information
- Coding Sequence
- ATGGATATTTCAGAGAATTATCCAATAAAAGAGGAAAACGTTAATAGTTTCGGTCTATTCGAAGAAGTTCATGATGATGCTAATTCACAAATGGAAACGATGATCGATCAAGTGAAAATGGAATACTTTTTGGAAGAGCCCAAAGTGGAATGTGGTATGCAACAATTCAACGAAGATGCAGACGACGGTGATGCAAATAAACAATTCTACAATGAAGTTTACGAGATATACGAGTTTGAAAACGAAGAAGATTATCAGaaacatcaacagcaaaatGAGATGGTAGACATGGAATTGGCAGAAGAAGGCAACGATGGTCTTAtgaacaacgacgacaacagcGACGGTGACAATAGTCAATTAGCAGAGGATAAATCGGAGGATGAAAATGATTATATAGTAGCATTGAGCTCAGGAAGGAAATACGGAGAACATGAAATGCATTTGAGCAAGAATAATTTGGTCAGCGGTAGTACGTGCCAACGTATTATACATAATCGCGgtgtatgtgaaaaatatattgtgCGTATCTGTCCAATTTGTGGCACTGAGTATGAAAATTATGCAGCATGGCGTCAGCATCTCAATGCAGAACATCAGCTTGGGAAACGTGAACACCTCAATATggaatattttaatgcaaaaaaagcGAAATGCACACAATGTGATGTCGTTCTCAActcaaagaatttttctactttattgcTGCACGAAATTAAACATTTGCCATACAGTAATTTTTTGAAATGCCGAATATGCAACAAGCTTACTTCGCATACCATGAGCatgaatttacatttaaatcgCACCCATGCCAGAGAATTGCTTGAACATGCGCGACACAGTAAAACATGTTGTCCATTTTGTGACAAAATCTTCGATAACTACAGACTCATGCAATCACATATGATTAATATCCATCATAAATTGaacaatgcaaaaattatatttgtctGTCCGAATTGTAACATTGAGTTCAAAAATGACGAGTCTGAGTTGCGACGACACCTGGGCTACGATCACGATTACACAACATTTGATAAGCTGAATTTCGATGTAATTACAAATGAGAATAGCTCCGTAACGAAGTATCAGTGCCGTGAATGCAgtgcattgtacatacatatgaattggATTGTGTTGCGCGAGCACGCGATGAAACATATAACTGCTATGCAATGTTTTAAATGCAAGTACTGCGCTCGCATGTTTTCCTCACGACTATCTATACGATATCACGTTTGTGATGAGCTGCGCTCAACCCTAAAAGACATCCCCAAAGCGGCCATAGatgacgTTAATAGCACAACAGGAGACTCACTAAATAGCAGACCTTCGAAATGTTCTAAATGTGGTGAAGAATTCATCTTAAAAGAACAATTATCCAAACACAATTGTTCTGTCGATACTCTCATCACGACGACTGCATCGTCGTCCTCTTCGGCCAACGAAAACAATGATCACAAAGTGACAGCAAAGTTTCAAGAATTTGAGCAATTGGTAAAACACATTTGTCCGGCTTGCAATgtagaatttgaaaatattaaagaatggCACTCTCATCTTAATACAATGCATAAGCTGCATACGCTCCATGGGGTACGTATGGTGCAGGTGGAAGAGAATAAGGTAAAATGTTTGGATTGTAATGTTTTGATGAAAAACATTGCTGTCATCAGACTTCGGCATAGGTTTCATCATTTGCCCTATAAACCATATAAATGTAGATATTGTGGTGATGGTTTGGATAAATATGAAACTGTCTACAGTCATGCCAGAAAATGCCAATGTCAAACTGTGGCGGAAATTGGTGCTAACAGTAACGAACTTAATCAGGAAGTAACAGCAGAGgaacttataaaatttatatgcccACTTTGTCCGGAGCTTGAATTCAACCGATTCTCCCAGCTCAATGCACATTTTCGCATTGGGCATAAATCCTTTGAAGATTCATTTGTAATGCATACAAATGGTTCGATGAGCTGTAAGCAATGTGAAAAGAGTTTTATCGATAGCGATATACGTCGAATGGTGAAACATCATCTCTTTCACGTGGCCATACATCCGTACCATTGTCGGCAATGTTCGCACGTGATGATGGATTTTCAGAAAATGAAACAGCACGTGCGAATTGTTCATTTGCATCAAATGGATTCAGTTGCAAGTGCAACAGCAAATGTTGAAACCACAGTTAACACAGCAACTACATCATCAAACAGTAACAAAACATTACCCAAAATATCTAAAGCTCGCATGGCATACTGCAGTGAAAAGTCACCAGTGCTGAATCAGTACAATGATTATATAACTTATGCTTGTCCGGAATGCAACGAGGCATTGCCAACGCAAAACGAATGGCATGTTCACATAAACGCCAAGCATGATTTCTTCGATGAGCAACaaatgaatattgaaatattatcgGATGGCACTAAGAGATGCAAGGAGTGTGATGTAAGGATCACTGGCGGAAATCTACACGAGCAGCGTCACAAATTAACTCACATGCCTTACAGGTCATTTATTTGTGCACTCTGCTATCATCGTGCAAATACGCTGGGCGTTCTCTTCCAGCACATACGGCGACGGCACTTTACACCCGgaatttttaaatgtgttttatgTCCGCTTATCTTAAACACTTCATACGAACAATGCGAACACATTAAAACACACAATCCCAAAGAATGGCCCGATACTATTTGCCGTATTTGTTTTCGGAATTTAAGTTCCCGATCTTCCTTGGCCGCCCACATGGAAACGCATGAAGCTGAACGAAGGCGATATAAATGTGAATTTTGTGATCGTCAGTTCTTAAGCTCGAGTGAAAATAGGAGACACCAATTGCGAAATCATCATCTTGACGAAGccaatttaaaataa
- Protein Sequence
- MDISENYPIKEENVNSFGLFEEVHDDANSQMETMIDQVKMEYFLEEPKVECGMQQFNEDADDGDANKQFYNEVYEIYEFENEEDYQKHQQQNEMVDMELAEEGNDGLMNNDDNSDGDNSQLAEDKSEDENDYIVALSSGRKYGEHEMHLSKNNLVSGSTCQRIIHNRGVCEKYIVRICPICGTEYENYAAWRQHLNAEHQLGKREHLNMEYFNAKKAKCTQCDVVLNSKNFSTLLLHEIKHLPYSNFLKCRICNKLTSHTMSMNLHLNRTHARELLEHARHSKTCCPFCDKIFDNYRLMQSHMINIHHKLNNAKIIFVCPNCNIEFKNDESELRRHLGYDHDYTTFDKLNFDVITNENSSVTKYQCRECSALYIHMNWIVLREHAMKHITAMQCFKCKYCARMFSSRLSIRYHVCDELRSTLKDIPKAAIDDVNSTTGDSLNSRPSKCSKCGEEFILKEQLSKHNCSVDTLITTTASSSSSANENNDHKVTAKFQEFEQLVKHICPACNVEFENIKEWHSHLNTMHKLHTLHGVRMVQVEENKVKCLDCNVLMKNIAVIRLRHRFHHLPYKPYKCRYCGDGLDKYETVYSHARKCQCQTVAEIGANSNELNQEVTAEELIKFICPLCPELEFNRFSQLNAHFRIGHKSFEDSFVMHTNGSMSCKQCEKSFIDSDIRRMVKHHLFHVAIHPYHCRQCSHVMMDFQKMKQHVRIVHLHQMDSVASATANVETTVNTATTSSNSNKTLPKISKARMAYCSEKSPVLNQYNDYITYACPECNEALPTQNEWHVHINAKHDFFDEQQMNIEILSDGTKRCKECDVRITGGNLHEQRHKLTHMPYRSFICALCYHRANTLGVLFQHIRRRHFTPGIFKCVLCPLILNTSYEQCEHIKTHNPKEWPDTICRICFRNLSSRSSLAAHMETHEAERRRYKCEFCDRQFLSSSENRRHQLRNHHLDEANLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -