Pscu008556.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- -
- Assembly
- GCA_958295655.1
- Location
- OY282450.1:74800500-74805501[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 0.5 10.9 0.0 1 23 124 147 124 147 0.97 2 13 0.019 0.97 10.0 3.2 2 23 196 218 192 218 0.92 3 13 0.0081 0.4 11.2 0.0 1 23 360 383 360 383 0.96 4 13 6.9 3.5e+02 1.9 1.9 2 23 434 456 433 456 0.94 5 13 0.00011 0.0054 17.1 0.3 1 23 511 534 511 534 0.93 6 13 0.00079 0.04 14.4 0.5 2 23 585 607 584 607 0.96 7 13 0.00039 0.019 15.3 0.1 2 23 702 724 701 724 0.95 8 13 0.96 48 4.6 0.0 1 23 814 837 814 837 0.92 9 13 0.21 11 6.7 4.2 2 23 887 909 886 909 0.96 10 13 0.027 1.3 9.5 1.0 1 23 982 1005 982 1005 0.91 11 13 0.42 21 5.8 0.9 1 21 1057 1077 1057 1078 0.95 12 13 0.0012 0.059 13.8 0.0 3 23 1145 1166 1144 1166 0.97 13 13 0.86 43 4.8 1.9 2 23 1216 1238 1215 1238 0.95
Sequence Information
- Coding Sequence
- ATGGAATGTAATCTGGAGCCATGGAATATGTTTACGAACGATTTTATTGCCGAAGAGACAGATGAAATACTCACAGATGAAATGGTAGCTCAGTTCCAGGCGCCAGATGCTGATCAGGCAGCAGAAGTAAAAGAGGAACCTGAAGATGTGCccgatgatgaggatgatgaagTTGCCGCCGTTGTCGGAAATAATGTGgacgacaatgatgatgatgatgcgatttttaattttgggcTTGAACCGCAAGTGGATATAAGTGAGACGCCAACGTCAACTGCTGCAAAGGCTGCACAACTACGTGTGCAACACGAAGATATTTCCCAGAGCAACTATGACCAACCCATAAACTATGAACGTGCAGTTGTATACATTTGCCCGGCATGCGGATCCGAATTCGATGCACAGGATGCATGGAAACGGCACATGAACAGCTTGCACAATTTCAATACACGACGTGGTctaaattttgtgcaaattgATAAACTTTATCACGAGTGCCTCGAATGCCACAAACGCATTGCAATGCACGCAATGGAAAATCTGTTGAAGCATAAATTCACGCATTTACCATATCGTTGCACCAAATGCAAAGTATGTTTGCGTCAGTACAAATACCGGCAGGATTTAATGGTGCACTTGCGTATTACTCATCGCGATGATCTACTGACAATGGATCAATCTCCTGTGCGGAAGTTACCCGTTGCCAATCGGAATACAAttggcggcagcggcagcggcgcCAGCAACAGTAGGCATGGTACGCCTTCGGCATGTTTGGAAATCAAAGATATCAAAGAGAATGCCTTTGATATATTTGACAATACTTTTGACGGCATTGAAGTGAAGAACGAACTCATAGAGCCCGATGATAATGACATTGATGCTTTGGCTGAGCAATCGAGCAATTCATTTGTATTGCCTTCGTTTCTTGAGGATGCCCTTAGTGCCAGCTCCTCGCATGCTTCTGAAATACAAGGAACAacaggtggtggtggtggtggtggtggtggtggtggtagtggcaCTGCTGGTGGTAGCAGTAGCGATGAGGAGATatgtcaaaaatatattcaatatatatGCCCACAGTGTGCCACTGAATATGGTACACAATCACAATGGCGCCAGCATATTGAAGTTGTGCATGATTTCGGAACGAGAACAGGTCTTAATTTCAGGGAGGTCAATGGGAAACAGCATGCTCAATGCTTGGAGTGCAGTAAGgTAATCTTCGTAAATGTAATACGCAATTTGCAGCTACATAAATTCGGCCATTTGCCAAATAAATCTTGGTTGCGTTGCAAACTGTGCTTCCGTGCATGTGTTGGGTATAGGGAAATCATCAAGCACTTGACGAAACAACATCGTTTGGGCGCTGAATACGATGGTGGCGAGGAGACTGAAGAAAACGATAATACTAGCGGCGCCGCAggtgacgacgatgatgatggcaCCGCCGAACAATTGCTTATAGAACCAACAGGGAAGGATGAAGGTGTACGCGATGCATTCGAGCCGCAAATTGATTATCTGTGCCCACAGTGCGGCAAAGAATACACCGATAAGAAATTATGGCGCAAGCACATAGTAAAAGCACATCAGCTCACAGATTTGAATGTGTTGAACTTCAAGGTGATCAATGAGCGTCAGGTAATGTGTCTGGAATGCCTTAAGGTAATCACAAATGCATATGGTGTGCAGAATGCCCAGCAGCATCGCATCACACACATGCCCTACAAAGCGTTCATACGTTGTCGCTTGTGCGCCAAATCGTACACCGACCGCAAGGGATTGGTTAAACACTTACGTTCAGTGCATCGTTATGGCGGTACGCGTATAAGTATTGGCATGAGCATGGGCCTGGGTGAGACATCCCGCTCATTTACCGATGCTTCGCCACTGCCAAAGCGCAAAATGATCCCAACGCCGTCGGCAGCTGCAAAACTTTACAAATCATCGAAGCGTCAGAAAGAGATTGTCAAACATGCTGACGTCACTTATGAGATTCAATATTTGGATGAAGACGAGGATACGATTGTGGATGATGCACCTGTGCCGGAGCTCTCATTTAGCAGCAGCTTTGCCCAGTTTTCACGCTTGAAATGTGCCGATTGCGGTTCTATATTCCCAACACAGCAGGCGCTCAAGGTGCACATGAATGAAGAGCATGAATTCCTTGACTTCAATAATCTGAAACCGTTGTCCGAAAAGCCAAAGTCATCAAGCAGTCAGCAGCAACGCAATTCAACGCGCGACTATTCACGCCATAATTCCATTGACAACACCACATCCAATTCGCAAGCCATGCATGAAGAGCAATCCAATGACACGGATGAACTGCTGCTCGTGCCCACGGGCGATGAGGAACTGAGCTTCTCGTCATCCAACAACACGGCCGGGCAGGCCGGCATTCATTGTATCGAGCGCAACTTTTGCTATTTGTGTCCGGCGTGCGGTGTTGAATTTAAGGCGCAAATCGATTGGCGTGGTCACATCAACGAATCTCACGGTTTCGACAAGCGCAGTGCACTCAACTTCCGTGCTGTTGACAAATTCCGCTTTCAATGCACCGAATGCAATGACATTGTGTCCAGCGCCAAGCTGAAGGGTCTGCAAGATCACAAATTCAGACACTTGCCGTACAAGCTCTACATAAAATGTCTGTTGTGCAGCACTTGCTACAATCACAAGCCGAACATGGTCAGTCATTTGAAAATGCGCCATAACATTGTGGATACACGCTCACCACAGTCGAGCGAACGCGACGATTATGACTATCTAGGTGGTACGCATGCAAGCCCACGTCAAATGTCGCTAGCCTCAATGGGGTCGTCGTCCAACATCTCGTCATCGGCCTCCTTGCCCAACAAGCCGCCCGGCCTGAAAACCGTCGAGGACTGCATCTCATTTCACAATGCGGTCGATCACAATTGCATTACATACTTCTGCCCACAGTGCAACGAGAATTTCGACACGCATGTCTTCTGGCGCAAGCACATTGTCGAGGAGCATAATCTCAACAGTCGACAAGGTTTGAATTTCCGTCAAATCGACGAGCATCACTATCTCTGCTTGCAGTGCTACAAGCGCGTAACTGTCACGCATACAAAAGGCGCCATCGGTCAGCTGCAATCGCACAAATTCCGCCACTTGCCCTACAAATCATTCAAATGTCTGGCGTGCAATGGCGAATTCGTGCGCAAGCAAATGTTCTTTAAGCATCTGAATCGTGCTACCAATTGCTGCGAACAGAACCCGGACTATGTAGGCACGCGCAATTCCAGCGCCAGCGATACCAAGCAGATGCAAGCAGCGCGCGCTGATGCCGCCCATGAAAGACAGCTGAAACACAACTCCTcctccgccgccgccgccaccaccagtGTCAACGACTCTGTAATTATCGAGCAGGGATCGTTCTTCGTTTTGTGTCCACAGTGTGGTAAAGAATTCGACACGTGGCGCCCATGGCGTGAGCACATCAACATCGAGCACAGCCTGGGCAAACGTGAAACGTTGAAATTCAAGAAGCTCAGCCCGACGCTGAATCAGTGCTTGGAGTGTCGCGAACACGTCAGCGGCAACAAGCTACGCGACTTGCAGATacacaaattcaaacatttaCCCTTCGGCTCATTCATACAGTGCAGATACTGTTCGGCGGCCTATCAACACATACGCAACATGAAGAACCATCTGATGCAGAAGCATCCCAATGCAGTACTGTATACGGAGAAAAGCAACGATGAATATGGAAAAATGGGAGAAGAGGAGGAGGATGCAGCAACGTTGgttggcgatggcgatggcgatgctGAGGTCGAAGGCGAAGGTGAAGTTGAACCAGAAGGCGaaggcaatagcaacagcaatgaGCCTAACAATGACGATGAAGACCAGCAGCCGCAGGAGGACGAAGAGGACGATGAAGAGGTGGAAGAGATAGAGGAGGTAGAGGAGATCGAGGAGCCAGACGAACAATTTCTTTTAGGTTAA
- Protein Sequence
- MECNLEPWNMFTNDFIAEETDEILTDEMVAQFQAPDADQAAEVKEEPEDVPDDEDDEVAAVVGNNVDDNDDDDAIFNFGLEPQVDISETPTSTAAKAAQLRVQHEDISQSNYDQPINYERAVVYICPACGSEFDAQDAWKRHMNSLHNFNTRRGLNFVQIDKLYHECLECHKRIAMHAMENLLKHKFTHLPYRCTKCKVCLRQYKYRQDLMVHLRITHRDDLLTMDQSPVRKLPVANRNTIGGSGSGASNSRHGTPSACLEIKDIKENAFDIFDNTFDGIEVKNELIEPDDNDIDALAEQSSNSFVLPSFLEDALSASSSHASEIQGTTGGGGGGGGGGGSGTAGGSSSDEEICQKYIQYICPQCATEYGTQSQWRQHIEVVHDFGTRTGLNFREVNGKQHAQCLECSKVIFVNVIRNLQLHKFGHLPNKSWLRCKLCFRACVGYREIIKHLTKQHRLGAEYDGGEETEENDNTSGAAGDDDDDGTAEQLLIEPTGKDEGVRDAFEPQIDYLCPQCGKEYTDKKLWRKHIVKAHQLTDLNVLNFKVINERQVMCLECLKVITNAYGVQNAQQHRITHMPYKAFIRCRLCAKSYTDRKGLVKHLRSVHRYGGTRISIGMSMGLGETSRSFTDASPLPKRKMIPTPSAAAKLYKSSKRQKEIVKHADVTYEIQYLDEDEDTIVDDAPVPELSFSSSFAQFSRLKCADCGSIFPTQQALKVHMNEEHEFLDFNNLKPLSEKPKSSSSQQQRNSTRDYSRHNSIDNTTSNSQAMHEEQSNDTDELLLVPTGDEELSFSSSNNTAGQAGIHCIERNFCYLCPACGVEFKAQIDWRGHINESHGFDKRSALNFRAVDKFRFQCTECNDIVSSAKLKGLQDHKFRHLPYKLYIKCLLCSTCYNHKPNMVSHLKMRHNIVDTRSPQSSERDDYDYLGGTHASPRQMSLASMGSSSNISSSASLPNKPPGLKTVEDCISFHNAVDHNCITYFCPQCNENFDTHVFWRKHIVEEHNLNSRQGLNFRQIDEHHYLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFKCLACNGEFVRKQMFFKHLNRATNCCEQNPDYVGTRNSSASDTKQMQAARADAAHERQLKHNSSSAAAATTSVNDSVIIEQGSFFVLCPQCGKEFDTWRPWREHINIEHSLGKRETLKFKKLSPTLNQCLECREHVSGNKLRDLQIHKFKHLPFGSFIQCRYCSAAYQHIRNMKNHLMQKHPNAVLYTEKSNDEYGKMGEEEEDAATLVGDGDGDAEVEGEGEVEPEGEGNSNSNEPNNDDEDQQPQEDEEDDEEVEEIEEVEEIEEPDEQFLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470892;
- 90% Identity
- -
- 80% Identity
- -