Basic Information

Insect: Palloptera scutellata
Gene Symbol: -
Assembly: GCA_958295655.1
Location: OY282449.1:89363849-89365768[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.7 1.3e+02 3.3 1.6 2 23 230 252 229 252 0.93

2 10 5.2 2.6e+02 2.4 0.6 6 23 261 278 253 278 0.94

3 10 0.31 16 6.2 2.7 1 23 284 307 284 307 0.95

4 10 0.0022 0.11 12.9 0.9 1 23 315 337 315 337 0.98

5 10 3.7e-05 0.0019 18.5 1.0 1 23 344 367 344 367 0.96

6 10 2.3e-05 0.0011 19.2 0.8 2 23 374 396 373 396 0.94

7 10 0.037 1.8 9.1 4.0 2 23 405 426 405 426 0.97

8 10 0.043 2.1 8.9 0.9 1 23 435 457 435 458 0.95

9 10 6e-06 0.0003 21.0 2.3 1 23 463 485 463 485 0.99

10 10 3.5e-05 0.0018 18.6 5.8 1 23 491 514 491 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.7	1.3e+02	3.3	1.6	2	23	230	252	229	252	0.93
2	10	5.2	2.6e+02	2.4	0.6	6	23	261	278	253	278	0.94
3	10	0.31	16	6.2	2.7	1	23	284	307	284	307	0.95
4	10	0.0022	0.11	12.9	0.9	1	23	315	337	315	337	0.98
5	10	3.7e-05	0.0019	18.5	1.0	1	23	344	367	344	367	0.96
6	10	2.3e-05	0.0011	19.2	0.8	2	23	374	396	373	396	0.94
7	10	0.037	1.8	9.1	4.0	2	23	405	426	405	426	0.97
8	10	0.043	2.1	8.9	0.9	1	23	435	457	435	458	0.95
9	10	6e-06	0.0003	21.0	2.3	1	23	463	485	463	485	0.99
10	10	3.5e-05	0.0018	18.6	5.8	1	23	491	514	491	514	0.97

Sequence Information

Coding Sequence: ATGGTTTGTCGCTTGTGTTTAAATGAAACCAAGGATTATTTACCAATTTTCAATGAAACTGGCGAGTCTGAAATTGCTAAAACTATCatccaatattttcatattgaaCTCAATTTAGACGATAGAATATCCACCAGAATATGCCATAATTGCTGGAATCATTTAAAGGATTTCCACAAATTCTGGCTAGGCATTGAACAGAAACAAGAGTCACTCCGTCGGCAGTTGGTTCTCGTAGGAATCAAACGAGATAATGAAATAGATGATGAATTGCAGGAGCAGCAGGCAGACCCAGTAGATGCAAAAGATATAACATTGTGTGAGCCCCTAATATGTGATATATCCATGGACCAGTTCTCACCAGGAATACAAGAATTTGAAGCTGCAAATGATGCCGATCTGAACAGCTTTAAGCGTTCGACTGATTCAGATGTGGATTATACTCCTTCAGTGGAAGTAGTTCAACCTCgtacaaaacgaaaatatacaaaacgaaaaatcaaaacaatcaaGTGCCAGCCACGCAAATCTGTACGTTTACGTTCTTGTGCAGAAACCACCTCCAATTCCGATCAAACAGAAAACAAAGCCAATGACAAGAAAGTTGAAACCTCATCGAAAAGATGCCCCAATCTCAAATCTGTTAGTCTGGAATTGGATGCGTATATTGCAGAAAATTGCAAATTGAGTTGCTGTTTGTGTTTGGAGCCTTTAGAAGACTTTAATACATTGAAGAAGCATTTTCGAAGTGAGCATAAATGTAAAGGATATGTTCCTTGCTGTAATAATCGTTATAGTAAGCGTGCATTGTATGTGGACCACATAAAGCTACACAATAATCCGGACTTATTTAAATGTGTGGAATGCAATAAGGTTTTGGCGAGCCGTAATTGCCATAGTAATCACATGGCCACAATCCATCCGCCTGAAGAACAACTTCAATATCAGTGCGAACTTTGTCCGCGTAAATTTGCAAAGCAATATATTTTGGATTATCATTTGAAAACACATCGTAACATGAAAAAAGATCATATGTGCGAAATTTGCAATAAGGGGTATCGCAGCCCAACAGAGTTAAAAGGACATCAAAAACGTGTACATTTCAATGAATTCGTATCAATGTGCGATATTtgtggtaaaaattttaaaagcaaacaaaatctCGATCAACACAAACTATCGATTCATGACGGTGTTCAGTTACCTGAAGCACAGTGTCAAGTATGCCACAGGTGGCTCAAAGACAAACGAAGCCTTCAAAAGCACATGTACAAACATCGTGATGAGGAATCAGGAAAAGAATTTAGTTGTGATTTTTGTGGCGCTGTGAAAGCAACACGAGTAACACTACTTAGTCATATACGTTATCATCAttcatttaaatcatttaaatgcAGTCTGTGCAATAAGGAATGCAAAAGAGCTCGGAATTTAGAGGAACATATGGCCACACACACTGGCAAGGATTTGTATACCTGCCCATTTTGTCCCCAAACATTTAAATCCCACTCAAATTTGCATAATCATAAGAAGAAAGCGCATCCCAATGAATGGGTGCGAAAATATACACAACCTAGTAAACCAATAAGTACCTAA
Protein Sequence: MVCRLCLNETKDYLPIFNETGESEIAKTIIQYFHIELNLDDRISTRICHNCWNHLKDFHKFWLGIEQKQESLRRQLVLVGIKRDNEIDDELQEQQADPVDAKDITLCEPLICDISMDQFSPGIQEFEAANDADLNSFKRSTDSDVDYTPSVEVVQPRTKRKYTKRKIKTIKCQPRKSVRLRSCAETTSNSDQTENKANDKKVETSSKRCPNLKSVSLELDAYIAENCKLSCCLCLEPLEDFNTLKKHFRSEHKCKGYVPCCNNRYSKRALYVDHIKLHNNPDLFKCVECNKVLASRNCHSNHMATIHPPEEQLQYQCELCPRKFAKQYILDYHLKTHRNMKKDHMCEICNKGYRSPTELKGHQKRVHFNEFVSMCDICGKNFKSKQNLDQHKLSIHDGVQLPEAQCQVCHRWLKDKRSLQKHMYKHRDEESGKEFSCDFCGAVKATRVTLLSHIRYHHSFKSFKCSLCNKECKRARNLEEHMATHTGKDLYTCPFCPQTFKSHSNLHNHKKKAHPNEWVRKYTQPSKPIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01470845;
90% Identity: -
80% Identity: -