Basic Information

Insect: Palloptera scutellata
Gene Symbol: BCL11A
Assembly: GCA_958295655.1
Location: OY282449.1:105135169-105169690[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.03 1.5 9.4 2.4 1 23 245 268 245 268 0.95

2 6 1.5e-05 0.00073 19.8 0.9 1 23 675 697 675 697 0.98

3 6 0.0025 0.12 12.8 4.6 1 23 703 725 703 725 0.99

4 6 1.3e-06 6.5e-05 23.1 3.2 2 23 956 977 955 977 0.97

5 6 1.7e-05 0.00085 19.6 3.3 1 23 983 1005 983 1005 0.99

6 6 3.1e-05 0.0016 18.8 0.4 1 22 1013 1034 1013 1034 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.03	1.5	9.4	2.4	1	23	245	268	245	268	0.95
2	6	1.5e-05	0.00073	19.8	0.9	1	23	675	697	675	697	0.98
3	6	0.0025	0.12	12.8	4.6	1	23	703	725	703	725	0.99
4	6	1.3e-06	6.5e-05	23.1	3.2	2	23	956	977	955	977	0.97
5	6	1.7e-05	0.00085	19.6	3.3	1	23	983	1005	983	1005	0.99
6	6	3.1e-05	0.0016	18.8	0.4	1	22	1013	1034	1013	1034	0.97

Sequence Information

Coding Sequence: ATGGATACACAAGCACCACGAGCACGAATACGAGTACCTGGACTCTTATCTAAAGGTAATACAAATGCGCGTGTGGACTCTGATTCTACAGAAGCGGACGCCACCGCGCAAGATATCCTTACATGTGGATCTTGCCAGAAGACATTCGCTCTATCGGACATCGTTAAATTCATACAACACAAAGTGCTACAATGCAATAAAGAAAACTATGGGCAGTGCTCAACGCAAgGCCCAACAAACGACAGAGATGCAGAAGATGGTAGACCATTAAGTTTAGTCAACCGCCGTCCATCGATATCGGCACCAATCACAAATCGAAAACCCTCCGGATCTCGTATACACACTCCTCCCCCCAGTCCAGCGGATCTGCTTGCAGATGGTGCGTCAAGTACACCGAAACGACTGGTCGATGAAAATGACAATACAACGCCTAAAGATGATATCGACGTCAACAGCTCGGCAAGTGGTGACGAATGTGCTACCAAAACTAGCACAGTTACTACCACCAACGAACCTACGAATACAGTTGAGCGTGATGCGGCGGTCAAAGCGAAAACAATCATCGCAATTAAGCAGGAGCGAGAGCAAGACGTTGATGTTGACACTTCCAGTTTAAATGAGTCCTCCTCCAATCAGGATAACAACAATAGCGATGGTCAACCGCTATCGAAACGACCCAAAATTGAAGTTGTCGATGCGGAGTCAAATACGATGCATACAGAACCCAGCAACTACACCTGCTCGACATGCAAAACTCGTTACACATCCGCGTGGCGTTTGATTCAACACGTTCAACACTCGCATGGCGTTAAGATTTACGTTGAGTTTCCCTCATCGTCCAATTCGGCCGCCATAGCGCAGGCAACACATTTAGTTTCATCATCTCTATCGCCATCGTCGTTGTCCTCCTCTTCGTTGTCGACGTCCCTTCCCATGGCCTTTATGCAACACACCACCGCcgctgccgccgccgctgctgccGCAGCTCAAAAGCACATAAATTCCACATCGAATTCCAGTTGCACGAGTACTGGCAGTTCCATGTGCTCAACATCGCCCATTAGTAACAGCAATCAAAGCGCTTCGCAGCAGCAAATccagcagcaactgcaacaacatcGCGCCGCAGCCGTCGCTGCTGCCGCCGCTGAGCAAcacaagcagcaacagcagcagcagcagcagcagcaacagcagcaaaacaatCTCACTACAGCTATGCAAAATGCACAGAActtggctgctgctgccgctgctggcATGCGCCACCATCCTCTGCTGCCCCCACCGGACATGCACACAAACCCCTTCAATTTACTTCGTATGCCTTTGCCGCCATCACTTGCACAAGGTCAAGTAGTTCCTACTGTATCACCGCTCTTCTCACGTCCACACCCCGATCACTATCGCATGGAGCAACTCGTCTCTGAACAATTCCGTCACCACGGCCTTAATTTAGCGGCAGCTGCTGTAGCGGCTGCCAACTCTCTAGCTGCACCACATGCCAACCCTTCACAAttcaatcaacaacaacaacaacaacaacaagtgaacAACAATAATGCTCCGGCGGGGAACAATATCGAGCAGCGCCCCCCTTCGAACAATAGCAGCCATCGTGGCTCGGTGCCACCTGCCGGACTGCCCCCACCGCCAGTGGTAACGCAACAGAATGCATCGGCACCTGGTCCTGGTGTTGGACAACAGACTAACCTCAGCCTTGAACCCCAGATGGATTTTTACTCGCAGCGATTGCGACAGCTTGCAGGAACAACAAGTCCTGGGGCTGGAAACATTGTTAACTCGAGCTCGCCGAGTCCACGACAAAAGCAATCGCCGCACTTTGCGAGCCCATCTCCCTCTCAACTACCTCCTACCCCGATCACAAGCAATTCGCGTCCACATTCACTGACCCCTCCAGAAAAGAATGACATGCTCACAAGTGAAAACGGTGCCCTGAACACGACTCCACGATCGGCATCGACACCACCTTCGAAGCTTAAAGAAGATAATGCAGCGATTTTCTCTTGTGCTTATTGCGACAAAAAGTTCCGCTTCGAGAACAACTTAATCATTCATCAGCGTGCGCATACCGGCGAGAAACCCTATAAATGCACAGCATGCGACTTCGAGTGCTCGCACATTAGCAAGCTGATGAAGCACATGCGAGTGCATCGCAGCCCTGAAGATGGTGTCAGCAATGCAGGCTCTGTAGAGACTAACGACGGCGAAGATTCAGAGCCGGAAGAGGAGATGGCGGAAGACGATGGCATCGAAGAGgaggatgatgatgacggtGAAGACTGCGAAGAAGTCGACTACGAAGCCGAGGACCTAAGCGTTAGTAATCGCATTGACGGCAAGAGTCAAAGTCCGAAAACATCGAATGCAGGCCCCACGTCACTTGTCGGCGAGCTTATGGATAAGTTCGGTCTCTCCAATATTGCACAATATTCGGAAGCATACAAACAGGCTCTACAGGAATCCGGCAACTTCAAGCATCTCACCAACAAAGACCGCGACAATAATAACTCCACAAACTCGCCCATGCAGCATCAAATGTCGGACAAGCTTAACGGACTGCCTGCTGCATTACGATTGCGCGACGAATTCGCCAAAAATATGTTCCAGCAGCCGCCACCACAAGATGCACCAACGCAGGTGCAGCAACTCTTCCATCCCTTCCAGAATCCATTCGAAATGTCGAAGCGCATGAAAATAGACAGCGATTGGTGGAATATGTCGGCGCTGCATCGCAATGAAGCACTTTTCGAGAATCTCAAATTGAAGCCACTGGGTCTCGGGTCGGCCAATTCGCTGCTGCAAAATCCCATCATGAAGAAGGAAAGCCGCCAACGAAACGACACCTGCGAGTTTTGCGGCAAAGTGTTCAAGAACTGCTCCAACCTGACGGTACATCGTCGCAGTCACACCGGCGAGAAGCCCTACAAATGTGAATTGTGCTCGTATGCGTGCGCCCAAAGTTCCAAACTGACGCGCCACATGAAAACTCATGGACGTACCGGCAAAGATGTGTACCGTTGCCGCTTCTGTGATATGCCGTTCAGTGTGCCCTCCACGCTGGAGAAACACATGCGCAAATGTGTGGTGAACCAGGGcaaagcagcagcggcagccaATGCTGCAAATGCAGTGGCAGCTGCGCAAGCCGCCGCCCAACAACTGCAATCGCAAATGCcaacgcagcagcagcaacaacaactgtcCCCGCCTGGCTCACTCACAGCATATCCGCCACAATTTGTCGGCATGGGTAGCAACAATATGTCACTGCCAGGCAGTGCCAGCGGGGACAATGACTCCAATACATCAGTCGGTTTGCCCACGCACGCGATTTCGCTGAAAGAAGAAGCATGA
Protein Sequence: MDTQAPRARIRVPGLLSKGNTNARVDSDSTEADATAQDILTCGSCQKTFALSDIVKFIQHKVLQCNKENYGQCSTQGPTNDRDAEDGRPLSLVNRRPSISAPITNRKPSGSRIHTPPPSPADLLADGASSTPKRLVDENDNTTPKDDIDVNSSASGDECATKTSTVTTTNEPTNTVERDAAVKAKTIIAIKQEREQDVDVDTSSLNESSSNQDNNNSDGQPLSKRPKIEVVDAESNTMHTEPSNYTCSTCKTRYTSAWRLIQHVQHSHGVKIYVEFPSSSNSAAIAQATHLVSSSLSPSSLSSSSLSTSLPMAFMQHTTAAAAAAAAAAQKHINSTSNSSCTSTGSSMCSTSPISNSNQSASQQQIQQQLQQHRAAAVAAAAAEQHKQQQQQQQQQQQQQNNLTTAMQNAQNLAAAAAAGMRHHPLLPPPDMHTNPFNLLRMPLPPSLAQGQVVPTVSPLFSRPHPDHYRMEQLVSEQFRHHGLNLAAAAVAAANSLAAPHANPSQFNQQQQQQQQVNNNNAPAGNNIEQRPPSNNSSHRGSVPPAGLPPPPVVTQQNASAPGPGVGQQTNLSLEPQMDFYSQRLRQLAGTTSPGAGNIVNSSSPSPRQKQSPHFASPSPSQLPPTPITSNSRPHSLTPPEKNDMLTSENGALNTTPRSASTPPSKLKEDNAAIFSCAYCDKKFRFENNLIIHQRAHTGEKPYKCTACDFECSHISKLMKHMRVHRSPEDGVSNAGSVETNDGEDSEPEEEMAEDDGIEEEDDDDGEDCEEVDYEAEDLSVSNRIDGKSQSPKTSNAGPTSLVGELMDKFGLSNIAQYSEAYKQALQESGNFKHLTNKDRDNNNSTNSPMQHQMSDKLNGLPAALRLRDEFAKNMFQQPPPQDAPTQVQQLFHPFQNPFEMSKRMKIDSDWWNMSALHRNEALFENLKLKPLGLGSANSLLQNPIMKKESRQRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDVYRCRFCDMPFSVPSTLEKHMRKCVVNQGKAAAAANAANAVAAAQAAAQQLQSQMPTQQQQQQLSPPGSLTAYPPQFVGMGSNNMSLPGSASGDNDSNTSVGLPTHAISLKEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01470848;
90% Identity: iTF_01470848;
80% Identity: -