Pscu005936.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- -
- Assembly
- GCA_958295655.1
- Location
- OY282450.1:2783870-2792154[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.13 6.4 7.4 0.1 1 23 1616 1639 1616 1639 0.97 2 13 0.37 18 6.0 1.3 1 23 1815 1837 1815 1837 0.94 3 13 0.0029 0.14 12.6 4.9 2 23 1840 1861 1840 1861 0.97 4 13 0.0035 0.18 12.3 0.2 3 23 1869 1889 1867 1889 0.98 5 13 1.1e-06 5.3e-05 23.4 3.6 2 23 1896 1917 1895 1917 0.97 6 13 8.3 4.2e+02 1.7 0.4 5 23 1930 1948 1928 1948 0.96 7 13 9 4.5e+02 1.6 7.6 3 23 1955 1976 1953 1976 0.93 8 13 0.0011 0.058 13.8 0.5 2 23 1987 2007 1986 2007 0.97 9 13 5.7e-05 0.0029 17.9 1.6 1 20 2013 2032 2013 2035 0.92 10 13 8.8e-06 0.00044 20.5 1.2 1 23 2043 2065 2043 2065 0.98 11 13 0.00055 0.027 14.9 9.5 1 23 2071 2093 2071 2094 0.96 12 13 0.0014 0.071 13.6 6.9 1 23 2099 2121 2099 2121 0.98 13 13 0.0026 0.13 12.7 6.0 1 23 2127 2149 2127 2150 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGAACGTGCAGTGTCCAGTGTGCACGCTGTTTCTGCATGCGGGCATGGATCTATCCGATCACTTGGAAACGCATCCCAAGGAACATGTGATTAAGGCGCTGGTGCTTATGACAATATCCGGAGTTGGCGGTGGCATTGCCAATGCTTCTCTCGCAGCTGCATTGGTTGGTGGGGAAAATAAAACCGAAACTGATTCAAAACCAATATTGAAGAAGGAACCccatttaaattgcaattctTCAGCCAGCAACTCATCCTCCTCGCTAACTGATTCACCTGCAGCTACATGTTCCTCAAACAGTAGCTTAAATTTCGCTAAGACATTTTCCTCACCAACAGCGGCAGCGAATGCAACTGCAAAATCGGTTACATCCCCAGGAGCAAAATCGCAAAAACAATTACATTTAGAAGCAACAATAAATTCCGTTTCCAGTGGTGGTAATGATATTGTTGGTAATAGCAGTAGCGGTAGCTGTGGTAGTTTAAGTAAtagtggtggtggcggcggaaAAGCAATTTTGAACCAACATCAACTAACTGTAAATTTATCGCCATCCTATCGACGTAacataccaacaacaactgtaAACGTAAACGAGACGTCACCAGTGATGCCAACAGATTTCAGTGTTTTTGCTGCCGATCATTatcagcaacaacgacaacagctgcagcaccagcaccagcaacaaacaaattcaGTAAGTCAATTACAACAACGGCACAGTACAACGCTGTCAGCGCCACCCCCACCACCTCTGCCAGGGAAATCAAATCAGATACCAATAACTGTTCAtgagctgcaacaacaacaaacacaacagcaacatacgATGAtcacaccagcaacaacagcaacacatcGTCATCAGCATGTGCATACACATAAACatcagccgcagcagcagcagcaacatcaacaacagcataaTCAGGCgcaacaaaactttaaaattgtttactctTCAACATTGCCTCCTACACCTCAGTTGCAGctTTTCTCCTATCATTCAACACCACAGCTGCAGCACCAAAAACCACCGCCTGCCTATGGCACTGCAATTAGTCAAATTCGATCtcaaaacaaccaaaataagaaaaatgctaCAATAGCTACTCAGCAACATCCACATCATCATCAGCCACACATGCATGCTAGAGCGCAATCACATCTTCTACCACCGCCACTTTCACATCCACCACCGTCAGTCGCGGACGCAGCATCCACCAGCAAGAATTTGTTCCAAACGAAACAAACTGAGTTCTCGCCtccaccaccgccaccgccaccacctaCTCAATCAACAGTCGGTCAGCAGCTGAAATTTACGAATGAAAAAcctattcaaaattattatcaaCACTTTGTTagtaatattaataacaatagcaacaatagcaacaatgttACAAACCCTAAATTTTCGTCGACTTCTGTGCGGGCAGCATCATCTTCGGCAGTCGCAGAAGCGGCACCACCGGTATCACCACCGCAATCACCACAAATACACTCGCTTGTGGGTTCATCGTCGTCCTCCAATAGACAAACGAATTCTCCTTTTACTAATATGGCCTCGCAGTCCCCATCATCTGTGTTGCGCTATGCTGAATCGCCGGTTGCACATTATCTGGAACGTGATAATGGTGACTTTATTGTACAGGAGCAACCCAAACATATTTTCGAGTGTGTCGAGAAAGATAATGGTGAATTCTCGGTAATTGAACGCATTTATCAATCACCACTAAGTGTGTTGCACATACACGACGACGACGAGGATGGTGGCAATGATGATAACGAAATAAAAGAGGAGGAACTAGAAGTAAAACCGGATGCCGATAGCAATGATGCAGAGGTTGACGCCAAGAATATGTCAACCGATCAAAATGTTTATCCAAGCGCTGATGATGAAGAATTCATGAGTATAACTAGTGAAAGAGAACAcggaaaagaggaagaaaagaaaGGGACGAAAACGCAAGCGTGTGGGAAAGAGAACGCAAATGAACATGTAATCAGTAATGGCAATTTGAATATGGAACCATCAACAAGTTCTGCTGCCACCGCTACTGGAACTCTGAATTCAACTTCAATTGTCTCTAGTCCTGtagcaacaaagaaaaaatctaCCAAAAATTCAGTGACGGTTATCAGTGATGTTCATCTAAATCTTACCGAATATTTGGATTTGGTCGGCACCATACTAGCATCCAACACTATGGTGAAAGACAGTATGCCACGATCAAAACCAATTCCATTAGtgaaagtggaaaaaattgaACCACTAGATGAAGATGAAATGGCGCAGCagccgcaacagcaacagaacacAGACATTGCAATGCACGTGGAATCAGCAGTATCAACAAAAACGACGATAATGGAACCACCAGCAAATATCGCCAACAAAAATGAGACTGAAGATTTATGTGCAAATAGTTGTAGTAAAAACAAGACCAGCttcttaaatgaaaagaaagagaaaccCTCCATAACAGCGATACAAGTTAAGTGCAGAGGAGAGCATACTGCCATTGGGCAAAATATTGCAGTGACATGCTCCAGTCATGTTACCAGCGTCATACGTATGGCAACAACTAGTCAACATCAGATGCcccaacagcaacaagaaccacaaaaatttgaatataatgataatgatgaagaTGCTGGGACACTGGGTCTTGAGGTTGAAAGTTCATCAACGATAACAGCagttgtagcagcagcagcacataagaaaaacaattttgataaagaagaaaatattgctgAAGATTTATCTCAGCCACAATTGAAAACTGAGGAGGAGCCCATGCAAATTGACGCTGATGATAAGGAACCACCATTGACACGAACTAATAATCCTCCGCCGCCATTAGCATTGAAACGGGGTCCAAAGAAGCTGGttattaaaccaaaaataacaacaaagacTGATACAAATGCCAATAATAAACCAGGAGACAAACCAGCAGAAGCAGACATTTCGATTGATAAACCCACGACATTTATGATAGCGCaagataatatgtatgtaatggaaAAGCAGGAGGAGCAAGAGGAGGAAAATAAACAGCAAACACTTGATACTCTGCCGCAAAATATTGTAATCAAGAGTGAACCAAACACAAACGCTTACgatggcagcaacaacagtagcatAATTTTAGAGCAACATTTAAAATTGGGTTCACAACAAATTGAATCCAAAAACGAAGAAAAGCCGTTTATGGTCGAGAATTTTTGTGCATTTACTGAAGAGGAAAGACAAAAAGTGGAGAGggatttccaaacaaaaatattgcggAAAATGAATTCCAATAGGAAAGCCAATGctacaaatgaaaatgttgtcAACGATGCCCATGTGCTGCTCGATTTTGCTGCAAATTCCATAAATCGATGCCCGGTCACAACCACTGCTATTAATTTCCTTTCTTCTAGTTCGATTTTTACAACACCTCTAACAACAGCAAATGCAGTTAATGTAACTGCTGCAAACAGTAATTCGTTATCGACGTCATTGCGTTGTGATGATGAATATGTTCCCGCAGAAATTGTACAAGAGATAGTTATATCATCCTCGTACTCCTCTCAGTCAGCATCCGATGTTGCTTTGAATGTTACATCTCAATCTACGCCTGCTGGTACCGATTCCAATGATCAACAGCATCAGCATAAGCattatcaacagcaacaacaacatactttCACCGATTATccttttagttttctttatggtggtggtggtggtggtggtagtgcaGCAGCTACCGGCAGCGTCACAAAGGGCAATTTCTCACCAATTTATCAACAGGCACATGACGCCACCACTGCAGCTACACTTGCCTCCGGCAGCACTACATCGGTCATCATTGAAGATTCAACCTCTGCACAGGCATCATCATCGCATCATCGACATCAACACAATCGCTTTGACGCCGTACAAAATACCGTAACGCAATGGTATCATCACACCGGCTCCACGGCGAACTCGGATTTCGAGGCAGCTTTGACGGTCGACTGCAGCGCAGCGGTTGATGGTGATGTTGGAAAGTATCTCGATTTGGACACTTGCAAGCGTGAACACATCGTTGGCATTCAAGCGGCTCCATCGTCTACATCGTCCTCTTTCACAGCTGCAACTGAAAGTAGCTTGGCTGGTGGTTGCACCGCAGATGCTCTGAATATACGCACCGATGAGAAAATGCCAGCTAAAGGGGAAATCTCGGAGCAGGAGAGCAATTGCGACATCGAGAATTCTTGGAGCCAACCAATGTATAGCGACCTTTCAGCACGCTTCTTCAAATCCTCATTCCCTGGAATATTCCAACAAGTAAACGGTTGGAACCaagatgaaatatttacaattcaaGACTTAAGCGCTCCAACAACAGCGGCTGCTAATGCAAGCAATCGATCAACCAACAAGAGCTTTGATTTTCGTCTTCCGCTGGAAGCAACTACCTCAGCCCCAACAAttggcaacaataacaacaacagcaacaaccacataCAACTATTTGGACAGCACAACGATGTGCTGCCATCGTTGTCAACATCAATATCCACCAATAAAAAGAAGCGTAAACGTGATGCTCACAGTAATAAAGCGACAATCACTCGTATGcagccaacagcaacaattacTTCACAGCAAATGTTGCAGCAGCAATTACATCCAACACATCTGTATGCAAATCATCAATTGCAGCAGCATCAGCTGCAATCCACCACTACTGCAGCATTGCTGGCTGGTCCAtcaactgctgctgctagtgcAGGCGTCAACGGCGCTGTTACGGTGGCATTGCAGCAAAAGCAACGGAAAAAGATCTACCAATGCCCGAATTGTGCAGCAGAATTTCCCAAACTTAAGGAACGTAATTCACATATGATCGTGGAACACAATTATGTGCGCCAAAATCGGCGCTTAATTTGTTACGATACAGCCGCAAACAGGGGCCTCAACATTGCGTCCGCGAACACCACTGCAACAATTACAAGCGCCGATTTAGCAGCTGCTGGCATGGCATCCTCGAGTGCTAACATTTTATTGCATACACAAAACAATATCGATTGCATGGAAGACTCGAAGCAGGGCATCGTGAAAATCGAAATTGACAATACACAGCAGCAAGCCTTGCCAACAGCGATAAGCTGCGAAAATATTAATGCCAAGGCAGAATTAGTTgatgaaaaggaaaatatttcactGGTGCCCGCCACAAGCTCGGTGGgcgcagcagcagaagcagctaATGGTGCCAACATGGACATCGATAGGAAACCAAATTTGCAGCCAATTGCCGTCACCACACCAGCCACTAAGCTGGCGGCTCTCTATCGCATGCTCGTGTCATTCAATATTTCAACGCTCAAGCAGAATCAGATTCTAACTGAACTCGAGCAAAAAGAAATCGAGACATCGATATTCTTTTGCTATGTCTGCCGGAAAAATTTCACTTCCGTTAAACTATACGATGCGCATTTAACAGAGCACCCAGCTGAATGCTTCACCTGCGGCAAGAAATTCCATCGTTGGAAAAACTTCTCGCTGCACTTGAAACGCCACTTGGGCTGGAAGGAGTTCGGGTGTAATGTGTGCGCAAAGAAATTCGTTGTGCGGAGTGCACTGGTGGAACATACGCGTATGCATACGGGACAAACACCGCTCAAGTGCAAAATTTGTGGTAAAAATTTCAAACGTTATTCCAATCTGACGCAGCATCGTAAGCGCCATGGCAAACAGATAATACGCAAGAAGGAGTACGTTTGCCATTGTGGTGAGGTCCTGCCGTCGAAGGCACGATTCCTCTGGCACAAGGAAACGCACGATGCGAAACCCAAATGCTGCCCGCACTGTTGCGACCGTTTCGTGCATGCTAACTCACTGCGACGACACATACGCCTGGCGCATTCCGACAAATTCGACTACACCGAACCGATGGAGTGCACCATGTGCAATCAGACCTTTGCTAAATCCTCCCTCAAGGCACACATGGCCACCCATTCGACGGACACGCAACACGATTGCAATATCTGCAATAAATCCTTCTCGACTAAGTGGAATTTGAAAATACACAAATGGGTGCATGCAAATCGCACCACTAAACCCTTCAAGTGCGAGCATTGCCCCAAAGCATTTGTGCGTGAGGTCGACTTCAAGAATCACATGAATGCGCACAAACAAATTAAACCGTACACATGTGAGCACTGCGGCTGTAAATTCATTCGTAAGTATAATTATATGCGCCACCGGCGCGAACATCACGGCAACAAGAAGTTCACTTGTGAGCAGTGCAAGAAATCGTTCCATCGCCATTATTATCTTATTGAACACCGGCGCATACACACCGGTGAACGTCCCTTCCAATGCACCATTTGCGGCAAAAGttcaacaacgaaaacaaatcACAACAAACACTTGAAGATACATCACTCACGTGACCCCTTCACTGTGGAAGCGTAG
- Protein Sequence
- MMENVQCPVCTLFLHAGMDLSDHLETHPKEHVIKALVLMTISGVGGGIANASLAAALVGGENKTETDSKPILKKEPHLNCNSSASNSSSSLTDSPAATCSSNSSLNFAKTFSSPTAAANATAKSVTSPGAKSQKQLHLEATINSVSSGGNDIVGNSSSGSCGSLSNSGGGGGKAILNQHQLTVNLSPSYRRNIPTTTVNVNETSPVMPTDFSVFAADHYQQQRQQLQHQHQQQTNSVSQLQQRHSTTLSAPPPPPLPGKSNQIPITVHELQQQQTQQQHTMITPATTATHRHQHVHTHKHQPQQQQQHQQQHNQAQQNFKIVYSSTLPPTPQLQLFSYHSTPQLQHQKPPPAYGTAISQIRSQNNQNKKNATIATQQHPHHHQPHMHARAQSHLLPPPLSHPPPSVADAASTSKNLFQTKQTEFSPPPPPPPPPTQSTVGQQLKFTNEKPIQNYYQHFVSNINNNSNNSNNVTNPKFSSTSVRAASSSAVAEAAPPVSPPQSPQIHSLVGSSSSSNRQTNSPFTNMASQSPSSVLRYAESPVAHYLERDNGDFIVQEQPKHIFECVEKDNGEFSVIERIYQSPLSVLHIHDDDEDGGNDDNEIKEEELEVKPDADSNDAEVDAKNMSTDQNVYPSADDEEFMSITSEREHGKEEEKKGTKTQACGKENANEHVISNGNLNMEPSTSSAATATGTLNSTSIVSSPVATKKKSTKNSVTVISDVHLNLTEYLDLVGTILASNTMVKDSMPRSKPIPLVKVEKIEPLDEDEMAQQPQQQQNTDIAMHVESAVSTKTTIMEPPANIANKNETEDLCANSCSKNKTSFLNEKKEKPSITAIQVKCRGEHTAIGQNIAVTCSSHVTSVIRMATTSQHQMPQQQQEPQKFEYNDNDEDAGTLGLEVESSSTITAVVAAAAHKKNNFDKEENIAEDLSQPQLKTEEEPMQIDADDKEPPLTRTNNPPPPLALKRGPKKLVIKPKITTKTDTNANNKPGDKPAEADISIDKPTTFMIAQDNMYVMEKQEEQEEENKQQTLDTLPQNIVIKSEPNTNAYDGSNNSSIILEQHLKLGSQQIESKNEEKPFMVENFCAFTEEERQKVERDFQTKILRKMNSNRKANATNENVVNDAHVLLDFAANSINRCPVTTTAINFLSSSSIFTTPLTTANAVNVTAANSNSLSTSLRCDDEYVPAEIVQEIVISSSYSSQSASDVALNVTSQSTPAGTDSNDQQHQHKHYQQQQQHTFTDYPFSFLYGGGGGGGSAAATGSVTKGNFSPIYQQAHDATTAATLASGSTTSVIIEDSTSAQASSSHHRHQHNRFDAVQNTVTQWYHHTGSTANSDFEAALTVDCSAAVDGDVGKYLDLDTCKREHIVGIQAAPSSTSSSFTAATESSLAGGCTADALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYSDLSARFFKSSFPGIFQQVNGWNQDEIFTIQDLSAPTTAAANASNRSTNKSFDFRLPLEATTSAPTIGNNNNNSNNHIQLFGQHNDVLPSLSTSISTNKKKRKRDAHSNKATITRMQPTATITSQQMLQQQLHPTHLYANHQLQQHQLQSTTTAALLAGPSTAAASAGVNGAVTVALQQKQRKKIYQCPNCAAEFPKLKERNSHMIVEHNYVRQNRRLICYDTAANRGLNIASANTTATITSADLAAAGMASSSANILLHTQNNIDCMEDSKQGIVKIEIDNTQQQALPTAISCENINAKAELVDEKENISLVPATSSVGAAAEAANGANMDIDRKPNLQPIAVTTPATKLAALYRMLVSFNISTLKQNQILTELEQKEIETSIFFCYVCRKNFTSVKLYDAHLTEHPAECFTCGKKFHRWKNFSLHLKRHLGWKEFGCNVCAKKFVVRSALVEHTRMHTGQTPLKCKICGKNFKRYSNLTQHRKRHGKQIIRKKEYVCHCGEVLPSKARFLWHKETHDAKPKCCPHCCDRFVHANSLRRHIRLAHSDKFDYTEPMECTMCNQTFAKSSLKAHMATHSTDTQHDCNICNKSFSTKWNLKIHKWVHANRTTKPFKCEHCPKAFVREVDFKNHMNAHKQIKPYTCEHCGCKFIRKYNYMRHRREHHGNKKFTCEQCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470796;
- 90% Identity
- -
- 80% Identity
- -