Basic Information

Insect: Palloptera scutellata
Gene Symbol: -
Assembly: GCA_958295655.1
Location: OY282449.1:64576950-64579218[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00096 0.048 14.1 4.3 2 23 152 173 151 173 0.96

2 11 1.5e-05 0.00076 19.8 0.3 1 23 179 201 179 201 0.99

3 11 0.00022 0.011 16.1 1.3 1 23 207 230 207 230 0.96

4 11 0.012 0.58 10.7 4.8 1 21 236 256 236 258 0.95

5 11 0.00011 0.0055 17.1 2.7 1 23 264 286 264 286 0.99

6 11 5e-05 0.0025 18.1 0.7 1 23 292 314 292 314 0.98

7 11 0.00094 0.047 14.1 4.1 1 23 322 345 322 346 0.97

8 11 4.9e-05 0.0025 18.1 0.9 2 23 352 373 351 373 0.98

9 11 0.0017 0.087 13.3 0.7 1 23 379 401 379 401 0.98

10 11 0.00023 0.012 16.0 0.7 3 23 409 430 407 430 0.96

11 11 4.6e-07 2.3e-05 24.5 4.3 2 23 445 466 444 466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00096	0.048	14.1	4.3	2	23	152	173	151	173	0.96
2	11	1.5e-05	0.00076	19.8	0.3	1	23	179	201	179	201	0.99
3	11	0.00022	0.011	16.1	1.3	1	23	207	230	207	230	0.96
4	11	0.012	0.58	10.7	4.8	1	21	236	256	236	258	0.95
5	11	0.00011	0.0055	17.1	2.7	1	23	264	286	264	286	0.99
6	11	5e-05	0.0025	18.1	0.7	1	23	292	314	292	314	0.98
7	11	0.00094	0.047	14.1	4.1	1	23	322	345	322	346	0.97
8	11	4.9e-05	0.0025	18.1	0.9	2	23	352	373	351	373	0.98
9	11	0.0017	0.087	13.3	0.7	1	23	379	401	379	401	0.98
10	11	0.00023	0.012	16.0	0.7	3	23	409	430	407	430	0.96
11	11	4.6e-07	2.3e-05	24.5	4.3	2	23	445	466	444	466	0.98

Sequence Information

Coding Sequence: ATGTCTGATACATCCGCAGATCAAGACTTGCAAACATATCTGGATTCCTTTAACAGGGAAATCGAGTGTGTAACACTAAGTGCAGATGCAATGGACAGTTTGTCTGCTGAAGTAATAGAGGCCGATGGTGAAGACGCGGCCGAGGATGAAAGTTATTACTATTTTGAGGAGACACAGAATACGGTTGAAAAGAATACATTTAAACAATCTTCCACCAATGTCAAGCATCAAGCGCATGAAGATGGAAAGGGATACGTGGTTGTTATGGACAAGAAtaagattaaattgaaattgcaaatgCCAGATGCCGATGATGATCCTGATGACCCCAACAAAGAAATTTACGAATTTAATGAAACCGAAGATGCAGAAGATGATAGTAAAGAATTTGTACCAAAAATAATTCGTGTGAAGTCATCATCTAGCAGCAATGATCCGAATGCTGCCGTTCTTCGTTGCACGCATTGCGATTACAGCACGAACAAACGTTTTTCCCTGTCACGCCATATGAAAGGTCATTCCGACTATCGTCCATTCAAGTGTGCGGTATGCGAACGTGGCTTTAAAACAAGTGCTTCTCTGCTGAATCACGTTAACACGCACTTGGGGAATAAACCGCACCCATGTAATTCATGCGAAATGCGTTTTACCACGTCGGGTGAGCTGGTGAGACATGTTCGCTATCGTCACACAGGTGAGAAACCACACAAGTGTACAGAGTGTGATTATTCTAGTGTGGAAATGAGTAAGCTTCGTCGTCATATGCGTTGCCACACTGGCGAACGTCCATATCAATGTCCTCATTGTACATATGCTTCACCCGACACGTTCAAGCTGAAGCGCCATTTACGTACGCATACCGGTGAGAAACCCTACGAGTGTGATATCTGTCAATCTCGCTTCACACAGTCCAACACACTGAAGGCTCATCGGCTCATTCACAGCGTCGGCGACAAGCCTGTGTTCCAATGTACGCTTTGCCCAACTACGTGTGGTCGCAAAACCGATTTGCGATTGCATATTCAAAAGTTGCATCATTCCGAACAACCCATAAAATGCAAACGCTGTGGCAAAGAACTGCCTGATCGTTATTCCTATAAAGTCCACATGAAGACGCACGAAGGGGAGAAATGCTTTCGttgtgAATTTTGTCCGTATGCATCGGTTTCAATGCGACACTTGGAATCACATATGCTCATCCATACCGACGAGAAGCCTTTTGGATGCCCCCACTGCGATTTGGCTTTTCGCCAAGGTCAACTGCTCAAACGCCACATCAATTTGtatcacaataaaaattatgtgcCACCGGAACCTCGTGCGAAGTTAAACAAGTGTCCCCACTGTAAGCGTAGTTTTACGCACAAAGGCAATCTTATACGTCACATGGAGGTTCATGATCCTGAGTCGAATGCCATGCAAGATAAGATGAAACTCAAAATTGGTCGATTAACACGTGTGCAAATGGAAAGTGGCAGCATTTCATCTGTAAATATCAGGAATATGTGCGACGGCAACGATGATTATGCTGAATCGGATACAGACGAAGATTATGAAATTATCGAGACTATAGATGATGATATCGACCAGAAGCCGACTATAAGTAGAGCTTATATCGAAGGAAttgaagaaaaagcagaaaatgtTGAGGAGATTAATACAGATTATGAACCGGAAATTAAAACTGTTTCGATTAAAAAAGAATCTGATGGCAAGGAATTCATGTCGGTTGAGGTCAATGACGATCAGGGTCAACAGTATATGTTTGTCGAAGTGACGCAatgcgatgacgatgacgatgacgaagaGGAGGACGACGATGATACTAATATCCTTACAGTTGAAGATACCGACGACAATGTTATAGAACTTCCAATTGAGAATATGTCCAAAgaAGATGAATCTGAGAATTTTGAGAATGAAGATGTGCATGACAACAAAGGAACTATACAGCTACTTCGCATCATTGAAGAGGATTAA
Protein Sequence: MSDTSADQDLQTYLDSFNREIECVTLSADAMDSLSAEVIEADGEDAAEDESYYYFEETQNTVEKNTFKQSSTNVKHQAHEDGKGYVVVMDKNKIKLKLQMPDADDDPDDPNKEIYEFNETEDAEDDSKEFVPKIIRVKSSSSSNDPNAAVLRCTHCDYSTNKRFSLSRHMKGHSDYRPFKCAVCERGFKTSASLLNHVNTHLGNKPHPCNSCEMRFTTSGELVRHVRYRHTGEKPHKCTECDYSSVEMSKLRRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYECDICQSRFTQSNTLKAHRLIHSVGDKPVFQCTLCPTTCGRKTDLRLHIQKLHHSEQPIKCKRCGKELPDRYSYKVHMKTHEGEKCFRCEFCPYASVSMRHLESHMLIHTDEKPFGCPHCDLAFRQGQLLKRHINLYHNKNYVPPEPRAKLNKCPHCKRSFTHKGNLIRHMEVHDPESNAMQDKMKLKIGRLTRVQMESGSISSVNIRNMCDGNDDYAESDTDEDYEIIETIDDDIDQKPTISRAYIEGIEEKAENVEEINTDYEPEIKTVSIKKESDGKEFMSVEVNDDQGQQYMFVEVTQCDDDDDDEEEDDDDTNILTVEDTDDNVIELPIENMSKEDESENFENEDVHDNKGTIQLLRIIEED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -