Pscu011068.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- grau
- Assembly
- GCA_958295655.1
- Location
- OY282451.1:36901386-36911972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.9e-06 0.0005 20.3 6.6 1 23 212 235 212 235 0.98 2 16 0.0001 0.0052 17.1 1.8 1 23 243 265 243 265 0.96 3 16 0.11 5.7 7.6 0.3 3 23 275 298 273 298 0.84 4 16 0.025 1.2 9.7 0.6 2 23 304 325 304 325 0.97 5 16 0.34 17 6.1 0.2 2 23 334 357 333 357 0.92 6 16 0.0026 0.13 12.8 1.7 1 23 364 387 364 387 0.95 7 16 1e-05 0.0005 20.3 1.6 1 23 392 414 392 414 0.96 8 16 0.0034 0.17 12.4 7.3 1 23 420 443 420 443 0.98 9 16 2.5e-05 0.0013 19.1 0.2 1 23 692 715 692 715 0.95 10 16 0.014 0.72 10.4 1.0 1 19 723 741 723 745 0.88 11 16 0.011 0.54 10.8 0.6 2 23 754 778 753 778 0.94 12 16 0.023 1.2 9.7 0.7 2 23 784 805 784 805 0.97 13 16 0.14 6.8 7.3 0.1 2 23 814 837 813 837 0.88 14 16 2.7e-05 0.0013 19.0 2.3 1 23 844 867 844 867 0.96 15 16 6.9e-06 0.00035 20.8 0.6 1 23 872 894 872 894 0.97 16 16 0.00051 0.026 14.9 4.5 1 23 900 923 900 923 0.98
Sequence Information
- Coding Sequence
- atgagttgcagtGTATGTCTTCAAGAACCAATTGAATCCcctcaaatattttttgatatcgaagaagaaaaacaaaatgttgcacGTATTGTAAGACAGCACTTTCACTTTTTACAGtttGAAAAATGTGACAATTCCACATCTCTAATTATTTGTCGGTGCTGTTGGCTAAGGATTActgattttcataaattttatatgactATTGAGCAAGCACATCTCAGTTTGTTAACCACCAGCCGTGGGTCTGTTGAAGCTGAAAGCAATTCGCAAAATGCAATGAATTTAGAGTTCCAGATTAGTATTAAAGAGGAGGCATTAGAAAATTGGACCGAGCAGATTTTACTAACCGAAAGAGAAGCCGACCATGAAAATGTATCTGTCGATGACAGTTCCAATCCTCTGTATGTAAGGGATATGTTGGATTGCttagaaatggaaaataataaggTATTGGAAATTAGTAAAAGCGATCATGAAGTTGATGCAAGGGATAATAAAATTGAAGCTATGAGAACACATTTTCGTACACATCATGAGAATCTGAGGccatatgttatgtgttgtaatcGAAAGCTGAGCAAACGATTTTTGCTTGTGCAACATGCGTACAAACATGAAGACCCGGAATAtttcaaATGCCAACATTGCCAAAAAATATTCTCTGATCGCCATAATCTACAAAGTCATATCAAGTCATATCATGCAACCGAAGAAGAACTTAAGTTTATGTGCGATCATTGTCCGAAAAGATTTTCCCGTCTTAATTTATTAGAGATGCATAAGGCTTCACATGTACCAATAAGTGAACGAAAGTTTCTGTGTGATACATGCTTAGAACCAAAAACTTTTGCCAGTGAGCAGCTATtgcaaacacacataaaaatgcGTCATACCAAAGCGACCAATGTATGCCACGTATGTGCCAAGGGAATACGTGACAAACAAGCTTTTGAAAAACATGTTCGTCTACATTTTGAAGACAGTGGGCCACGCGTGAAATGCCCACGGTCAGATTGTGATAGTTGGCTCAAAGATGAAGACAGTCTGAAAGAACATTTGCGACGACATAACGATGAAGGAAAGATATTCCAATGTAATGAATGTGATAGGATATGTAAAAATCGCAGAGCTCTTTCAGGTCACGTtaattacatgcatacaaataagGTGTTTGCTTGCTCACATTGcgacaaaacatttaaaaatgcattatcGTTAAagGAACATATGGCTCAACACACAGGAGAGAGTCTCTACAAGTGCCCATTTTGTGAGAAAACTTTCAATTCACACGCAAATATGCATTCacacaaaaagaagaagcatcCGAACGACAATTCCACATCTCCAATTATTTGCCGCTACTGTTGGCTGAAGATTAACAACTtccataaattttatgtaactGTTGAGCAAGCACATCTCAAGTTAACAACCACCAGCAGAGCATCTGTTAAAGGTGAATGCAAAACAGAGATTCCAGTAGATTTGGATGTCCAGGTGATTATTAAACAAGAGTCGTTGGAAAATTGGCCCGAACAGATTTTGATAACAGAAAGAGAAGCTGGTCAAGTAAATGCTTCAGACGATGATGTTTCCAATCCTTTGTATGATACGGATGTGTTGGGTTGCTTAGAAACAGAACTTGATGGCAAtagtgaaatattaaaagatGTTGAAACATATCCTAATGAAAGCAGAgaccacaaaacacaaaaaagaaaactgaaaaccaCTTCATGCACGGTTACAAATAGGAGCAGCAAGAAAGCGGCACGCCAAGATGCTGAATCAGAAGATAACTCTACGGAAGACAAGGACAAAAAGTCCTCTATCAGTAAACTTCAAAAGCGCCAACAAGCCTCTCCCCACGATGATGCAATCGTCAGAAAACATATTCCTATGGGTTGCGATTTATGCGCTTTTGTTGGTGAAGATTTCATAGCTATGAGTACACATTTCCGTTTACAGCACAAAAATGTGAAGCCATACGTTATgtgttgtaataaaaaattaagcaaacgaTTTTTGGTGGTACAACACGCGTACAAACATGAGAATCCGGAATATTTTAAGTGTGAAGATTGTCAGAAAGTATTTTCCGATGGCTCTGTTCTGCGAAGTCATATGCTAGCAAATCATGCACCAGAAGAAGAATTAAAGTTTTCGTGCGATCAGTGTCCTAAGAAGTTTTCGCGTCGCTACATTTTAGAGCTGCATAAGCCTTCGCATATACCAATCAATGAGCGAAAGTTCCTCTGTGAAAAATGTCCACAACCAAAAACatTTGCAAGCGAGCATTTGCTAcaaattcacataaatatgcGTCATACTAGAGCCACTAATGTATGTCATGTATGCGCTAAAGAAATACGGGACAAACAAGCTTTTGAAAAGCATGTACGTCTTCATTTTGAGGATAGTGGGCCACGCGTAAAATGTCCTCGACCCAATTGTGATAGTTGGTTGAAAGATGCAGACAATCTAAAGGAGCATTTGCGCCGTCATAATGACGAGGGGAAGATTTTTCCTTGCGACGATTGTGGAAAGATATGTAAAAACCGCAGATCCCTTAGAAGTCATATTAATTATACTCACAAGAGTACAGAATTCACTTGTGGAGATTGCAATAAAACCTTTAAGAAAGCAATATCTTTAAAGGAACACATGGCTCAACATACCGGCGAGACTCTCTACAAATGCCCATTTTGCTATAAAACCTTTAATTCGAATGCAAATATGCATTCACACAAAAAGAAGGCGCATCCCGTAGAATGGGAAATCTGGCGTAAAACGAAACGTGGTAGCTCGCAGCAACAATTAAGCGATGATTTTATTGCGGAAGCTGCatcaaataatttaagtaatgACAATGTTAAAATATATTGA
- Protein Sequence
- MSCSVCLQEPIESPQIFFDIEEEKQNVARIVRQHFHFLQFEKCDNSTSLIICRCCWLRITDFHKFYMTIEQAHLSLLTTSRGSVEAESNSQNAMNLEFQISIKEEALENWTEQILLTEREADHENVSVDDSSNPLYVRDMLDCLEMENNKVLEISKSDHEVDARDNKIEAMRTHFRTHHENLRPYVMCCNRKLSKRFLLVQHAYKHEDPEYFKCQHCQKIFSDRHNLQSHIKSYHATEEELKFMCDHCPKRFSRLNLLEMHKASHVPISERKFLCDTCLEPKTFASEQLLQTHIKMRHTKATNVCHVCAKGIRDKQAFEKHVRLHFEDSGPRVKCPRSDCDSWLKDEDSLKEHLRRHNDEGKIFQCNECDRICKNRRALSGHVNYMHTNKVFACSHCDKTFKNALSLKEHMAQHTGESLYKCPFCEKTFNSHANMHSHKKKKHPNDNSTSPIICRYCWLKINNFHKFYVTVEQAHLKLTTTSRASVKGECKTEIPVDLDVQVIIKQESLENWPEQILITEREAGQVNASDDDVSNPLYDTDVLGCLETELDGNSEILKDVETYPNESRDHKTQKRKLKTTSCTVTNRSSKKAARQDAESEDNSTEDKDKKSSISKLQKRQQASPHDDAIVRKHIPMGCDLCAFVGEDFIAMSTHFRLQHKNVKPYVMCCNKKLSKRFLVVQHAYKHENPEYFKCEDCQKVFSDGSVLRSHMLANHAPEEELKFSCDQCPKKFSRRYILELHKPSHIPINERKFLCEKCPQPKTFASEHLLQIHINMRHTRATNVCHVCAKEIRDKQAFEKHVRLHFEDSGPRVKCPRPNCDSWLKDADNLKEHLRRHNDEGKIFPCDDCGKICKNRRSLRSHINYTHKSTEFTCGDCNKTFKKAISLKEHMAQHTGETLYKCPFCYKTFNSNANMHSHKKKAHPVEWEIWRKTKRGSSQQQLSDDFIAEAASNNLSNDNVKIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -