Pscu004505.2
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- -
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:127430582-127436019[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.21 11 6.7 0.2 2 23 228 249 227 249 0.97 2 20 5.7 2.8e+02 2.2 9.8 1 23 255 278 255 278 0.94 3 20 0.013 0.68 10.5 0.1 3 23 297 318 295 318 0.94 4 20 0.013 0.64 10.6 2.4 2 23 373 394 372 394 0.91 5 20 2.2e-05 0.0011 19.3 0.5 1 23 400 423 400 423 0.96 6 20 0.84 42 4.8 1.4 2 23 448 468 448 468 0.95 7 20 0.013 0.64 10.6 3.9 1 23 482 504 482 504 0.95 8 20 4.1e-05 0.0021 18.4 0.5 1 23 513 536 513 536 0.96 9 20 5.6e-05 0.0028 18.0 0.6 1 23 541 563 541 563 0.96 10 20 2.3e-06 0.00011 22.3 0.7 2 23 569 590 568 590 0.97 11 20 0.011 0.55 10.8 2.3 1 23 596 618 596 618 0.97 12 20 0.001 0.051 14.0 2.8 1 23 623 645 623 645 0.97 13 20 0.2 10 6.8 1.8 1 23 650 674 650 674 0.96 14 20 2.6 1.3e+02 3.3 0.1 7 23 715 731 715 731 0.93 15 20 0.39 19 5.9 5.3 1 23 739 762 739 762 0.96 16 20 2.4e-05 0.0012 19.1 0.7 1 23 769 791 769 791 0.97 17 20 8.3e-05 0.0041 17.4 0.3 2 23 797 818 796 818 0.97 18 20 0.0032 0.16 12.4 2.4 1 23 824 846 824 846 0.97 19 20 0.086 4.3 8.0 2.5 1 23 851 873 851 873 0.96 20 20 0.21 10 6.8 0.7 1 23 878 902 878 902 0.97
Sequence Information
- Coding Sequence
- ATGCAAGATCTGAAACAATGTCGCAGTTGCCTCAGTACGAAAGCTACCGAATACATCGATTATTACTCGTTCAATCTCTGTACACAATTGCAAGCCAAAGATGACGATAACCTGCCAGGAATGATATGTACTAGCTGTTCGCAAGATCTGCAAGTCGCCTATCATTTTGTGCGAATGGCACGACAATCAGATGCGGCATTGCGTGATAATTTAGCCTCAAGAGCCAAGAGTGATAGTGGTGCAAGTTCCTCAACAAAAGAGCAAGAAgatgaaatggaaatggagCATTTAGAGCTACTGGAAGAAGTAGAAGTCAACGAAGAGgacgacgaagaagaagaagaatgtgtAGTTGAAGAGCTATTAGATGATGAAGAAGTGATTGAGCAAATCGAAGTAATGGAGgTTGAAGCTGTAGAAGAGCACATACTAGAAGAAGTCTCCATGGAAGCGAACGTTGAGTTTGTGGAAGAGAAATCTCAAGTACAAGATCTGTTAACAGAATTGGCGCAACGAACATTAATGCAACATCAACCAAATATGAAACAAGTAAAGGAACTGCAATCTACTCCCGATTTCTATGCCGATGATGAACTGGATCAAAGGTATCTAATTGAATACCATGAGCAGGAAGATGCCACTGATGAGTTATTAAAATTGCCGCCTAGCGCCGAAAAATGGAAATGTTTCGAATGCAAACGTGTGTTACGTGGGGATGTGTCCTTTGAGGGGCACATGaatatgcataaaaatgttAGGCCCTACAAATGCACACATTGTGAATGTGCGTTTCGTTGTCGATACACGCTCAAGAGTCACTTCAGTATACGACATCAAACAAAATCATTAGATCACGATCAACATGACGAGCATCCAATCCCCGACAACTGTTCTATGTGTTCGAAAATCTTTGTATCCGCTGCAGAAACCGAAGAACACATGCAATTGGTACATTCAAACACCACCGAAGTGCAATGCCCACACTGTGAACATTTAGCGCCAATGCTACGTATGAAACTTGGTGAACATTTTCGCAACAAACATCCCGTAGAATACCGTAAGCATTTTCCTGTGGCGGGACGTCCAAGTGCTGAACCTGGCAAAACTACACCTTGGCAATGCAAGATCTGCAAACGTTATTTCCGTTCTGAGAGTTTATTGAGTGACCATTGTAATATACATTTGAATGAGCGCCCTTACGATTGTCAATATTGTTCGAAACGTTTTGCTACTGCTGTCAATATACGCCAACACATGCGTTTAGTTCATCCGGAGTATTATGAGAAGATCAGCGAAAGCCAAACAGCAGCCGATGCTGGTGCAGCAGCTGCTATGATGGCTCAATGTGAATTGTGTAAAAAGCAATTGTTgagtaaaaatttcgaaaagcaTATGGCACTTCATGAAAAGAAGGAACGTGAAGCATCAGAAGCTCCAACAAAATTCTTATGTGCTTATTGTTCGCGCGAATGTAAAACCCAAAAAACGCTCAATCAACATGAAAAAATGCATGTCGGTGAATCGCCCGACGTTGTATACATATGCGCTGACTGTGGACGCCAATATGCCACACAACATTTGCTGAATCAACATATCAAGCAAGCGCACAAAGAACGCGACCATATCTGTCCGATTTGTGGAAATGCATTCAAACTGAAGAATCAACTAGTCAATCACATGAAATTGCATTTAGAGAAGAATATTCAATGCACGCTGTGCGATAAGAAATATGCGCGtcaatttgatttgaatgtacACATGCGTAGTCACACAGGCGAGCAACCGTTCGCTTGTCATCTGTGTGAAAAACGTTTTGCCATTAAGGTACGACTCACCTATCATCTGCAGAAGCATTACGGTGTGAAGCACCAGTGTAAAGTTTGTGGCGCTGACTTCAACTCCAAACAGAAacttaaattgcatttatataAACACACAGGTATGCCGTATCGGTGTGAAACGTGCGATAATCATGGATTTGCCAATCGTGACGTtttCAAGCGACATTTGTCGCGTGTACACAATACCAAAATGTCTGAGGATGCTTTAGTTGAAATGTTTCAACAAAATACTGGCAAATCGATACGCATTATACCGATTATACctataaaaatggaaataatagCACCTagtgagggtgaggACAAAGAATTTGCTACGAAATTGAAATTACGCCGACATGAGGAAATTCATAATCCCAGCAGAACGCGTAAACATCCATGCGAACAATGTGAAGCCAAATTTTATACACACTTTGACAAAGAGCATCATATTCGCCGTGTGCATACGATCACGGAACGTAGTTTTGCGTGTGACATTTGTGGCAATCAATTCAAAGAGAACTATCAGTTACGCAACCACATGAAGCTGCACAAGCAAAGGACTTTGCCATGCCAGTATTGTAAGAAGACGTATGCCCGTCAAATTGATTTGGATATACATTTGCGTTCACACACGGGAGAGCTACCGTTTGCCTGTCACCTGTGCGATAAGCGTTTCGCTATTAAAGTGCGTTTGACCTATCATCTGCAGAAGCATTATGGTGTGAAGCATGAGTGTGGTGCATGTGGCGCCATCTATAATAGTCGTTGTAAACTACGCATCCATATGTTTAAGCACACGGGTATGCCATATCGTTGTGAAGAGTGCCCGGATGCACAATTTTCAAAGCGGGAGCGttATCGCAATCATATACAACGTCTACATAATCGTACACCCACCAATGAGGAAttggatttgaattttgaacgtaatacAGGAAAGACTGTGCATATTAAAGATGTTGGAAATAAATCAGTAACGCAGCAGAAGAATAAGGCACCAGCTCTTGATGTATGTGGTGATAATGCAGAAGAGGAACAATGCATTGAAGTTGTAGGCGATGATGGAGTGAACAACGATGATGCAAAACCAGAATGCGGTGCCAACTGA
- Protein Sequence
- MQDLKQCRSCLSTKATEYIDYYSFNLCTQLQAKDDDNLPGMICTSCSQDLQVAYHFVRMARQSDAALRDNLASRAKSDSGASSSTKEQEDEMEMEHLELLEEVEVNEEDDEEEEECVVEELLDDEEVIEQIEVMEVEAVEEHILEEVSMEANVEFVEEKSQVQDLLTELAQRTLMQHQPNMKQVKELQSTPDFYADDELDQRYLIEYHEQEDATDELLKLPPSAEKWKCFECKRVLRGDVSFEGHMNMHKNVRPYKCTHCECAFRCRYTLKSHFSIRHQTKSLDHDQHDEHPIPDNCSMCSKIFVSAAETEEHMQLVHSNTTEVQCPHCEHLAPMLRMKLGEHFRNKHPVEYRKHFPVAGRPSAEPGKTTPWQCKICKRYFRSESLLSDHCNIHLNERPYDCQYCSKRFATAVNIRQHMRLVHPEYYEKISESQTAADAGAAAAMMAQCELCKKQLLSKNFEKHMALHEKKEREASEAPTKFLCAYCSRECKTQKTLNQHEKMHVGESPDVVYICADCGRQYATQHLLNQHIKQAHKERDHICPICGNAFKLKNQLVNHMKLHLEKNIQCTLCDKKYARQFDLNVHMRSHTGEQPFACHLCEKRFAIKVRLTYHLQKHYGVKHQCKVCGADFNSKQKLKLHLYKHTGMPYRCETCDNHGFANRDVFKRHLSRVHNTKMSEDALVEMFQQNTGKSIRIIPIIPIKMEIIAPSEGEDKEFATKLKLRRHEEIHNPSRTRKHPCEQCEAKFYTHFDKEHHIRRVHTITERSFACDICGNQFKENYQLRNHMKLHKQRTLPCQYCKKTYARQIDLDIHLRSHTGELPFACHLCDKRFAIKVRLTYHLQKHYGVKHECGACGAIYNSRCKLRIHMFKHTGMPYRCEECPDAQFSKRERYRNHIQRLHNRTPTNEELDLNFERNTGKTVHIKDVGNKSVTQQKNKAPALDVCGDNAEEEQCIEVVGDDGVNNDDAKPECGAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -