Pscu003633.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Palloptera scutellata
Gene Symbol
-
Assembly
GCA_958295655.1
Location
OY282449.1:102253586-102255606[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00031 0.016 15.6 0.9 1 23 206 228 206 228 0.94
2 12 0.0017 0.087 13.3 3.0 1 23 234 256 234 256 0.97
3 12 2e-05 0.001 19.4 0.7 1 23 269 291 269 291 0.99
4 12 1.5e-06 7.3e-05 23.0 2.5 1 23 300 322 300 322 0.99
5 12 0.00014 0.0069 16.7 5.2 2 23 329 350 328 350 0.97
6 12 2.7e-05 0.0014 19.0 2.7 1 23 356 378 356 378 0.96
7 12 3.3e-06 0.00016 21.9 2.1 1 23 384 407 384 407 0.95
8 12 0.026 1.3 9.6 5.3 1 23 411 433 411 434 0.95
9 12 0.00062 0.031 14.7 3.7 1 23 441 464 441 464 0.95
10 12 0.0001 0.0051 17.2 1.4 1 23 470 492 470 492 0.97
11 12 3.5e-05 0.0017 18.6 3.8 1 23 498 520 498 520 0.99
12 12 0.00016 0.008 16.5 1.4 3 23 528 548 527 548 0.96

Sequence Information

Coding Sequence
atggatAATGCATCATGCGGCGCAACAACATGCCGCACTTGTTTGAATCATGGTCGGAATTTCCATTCAATGTTGGAATACGAAAGTGTCAGCAATTTACAAATTAGCGACATATTAATGGCAACCGTGCCACAGCTGCACATTCAACCAGGAGTTGATAAGTTGCCAGTGCAAATATGCGGCGAGTGTTTGAACAAGTTGAATATTGCATATCGATATCAGCAGTTGTGCATTCAAACGGATAAACGCTTGAAGGCAATGCTGGTGCACGATGGAGGAGATGCTGATGACGAGGAGCACGTGGACATACCatcaaaaaaggaaatattggaGCCGGAAGAATTTGCCACTGATCCATCAGTTCATAATGGTAATGCGTTGCTGCCACTGGATGACAGTTGCATTAAAGTCGAAAATGAGATCGAATGTGAAGAGTTTCTCTATAGTCAACAAGAGGGTGAGAACGGCCTATTTAAAGCGATAACTAATGATAAGACAACGACCGCATCTGAAGAAGATGCTATCAACGAAGCTGAATACACTGCCCGTGATCAGAATGAAATTGGCGtaactgaaattaaaaaACCCCTTGCAAGTTATCGGCGTAAAGGACGTTATCCTTGCctcgtttgtaaaaaaaaattcgacaaTTCATTTCTCTTACGTCGACACAGCGTAGTTCATTCCATCACGCGACTGCATGAGTGTGATATTTGTAAATATCGTTTCACTACCGAGAATATGATGAAAAGTCACAAAGCGACACATAGAATCGCTGCGAACACAGCAGCATCACCTGATGGTTACAAATGCCCATTGTGTCCACGTCGCTTTGCGAAAAATCAGTTACTCTCAGCTCATTTTCGAAGTCATCGTCGTGGAAAACCGcatcaaatttttcaatgcGAATATTGCCCAAAACAATTTAGGAAATTGTCGTATCTCACACAGCATCGACGCATACATCCTGAAAAtcattgtttgaaatgtcatttgTGTGAAAGAACGTTCGCTATAAATTcgcatttaaaaaatcatttgaaaaaacATAGTGGCCTTAAGAAATACGTATGCATACACTGTGATAAAgCTTTCTTCACTAATAGCAATCTTAAGCAACACTTGACTACCCACAACAGCGAGAGGTCACACATATGTCCACAATGTGGCAAAGCTTTTAAGCAACGCAATTCTTTGTATCGACATCAGCAGCAACTGCACTCCAAACGCTATCATTGCCTAGAGTGTTCCAGTAAATTTTTCAGGCAAACAGACTTAAGTAAGCACATGTCTGCACATCATACCGCCAATACACAACCacatatttgtgatatttgcgGTTCAAGCTTTTCACGCTTGTGTGCGCTTacgaaacacaaacaaaaaatgcatagCGCCAATCTTCCGTACAAATGTTTGGAATGTAATAAGAGttttttttacagCGGTAGCATGCTCCGTCATATGGGGAATCATACTGGAGAAAAATCTTATCAATGCAAATATTGCGATCACGCTTATTACGAGAGTAAAGATTTAACTAAACATTTACGTTCACATGTTGGCGAGAGTACGAACATGTGTGATGAATGTCCAAAggcttttaaatataaaaagaagctacaattacataaaatgcaacattttaaacaaaaacaattagaGTTAGAAACAGCAACTGCAGCAGTATCatcagcaacagaaacaaaggAATCACCTACAATAGCACCAACAACGATAGAAGTGTTATTGACCACAACAGAAGAAGGACAGACAACAGCGTCCATTGGAATTGTGAATTAA
Protein Sequence
MDNASCGATTCRTCLNHGRNFHSMLEYESVSNLQISDILMATVPQLHIQPGVDKLPVQICGECLNKLNIAYRYQQLCIQTDKRLKAMLVHDGGDADDEEHVDIPSKKEILEPEEFATDPSVHNGNALLPLDDSCIKVENEIECEEFLYSQQEGENGLFKAITNDKTTTASEEDAINEAEYTARDQNEIGVTEIKKPLASYRRKGRYPCLVCKKKFDNSFLLRRHSVVHSITRLHECDICKYRFTTENMMKSHKATHRIAANTAASPDGYKCPLCPRRFAKNQLLSAHFRSHRRGKPHQIFQCEYCPKQFRKLSYLTQHRRIHPENHCLKCHLCERTFAINSHLKNHLKKHSGLKKYVCIHCDKAFFTNSNLKQHLTTHNSERSHICPQCGKAFKQRNSLYRHQQQLHSKRYHCLECSSKFFRQTDLSKHMSAHHTANTQPHICDICGSSFSRLCALTKHKQKMHSANLPYKCLECNKSFFYSGSMLRHMGNHTGEKSYQCKYCDHAYYESKDLTKHLRSHVGESTNMCDECPKAFKYKKKLQLHKMQHFKQKQLELETATAAVSSATETKESPTIAPTTIEVLLTTTEEGQTTASIGIVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01133074;
90% Identity
-
80% Identity
-