Basic Information

Insect: Palloptera scutellata
Gene Symbol: -
Assembly: GCA_958295655.1
Location: OY282449.1:102241809-102243975[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.8e-05 0.0019 18.5 0.6 1 23 245 267 245 267 0.97

2 12 0.00014 0.0068 16.8 6.4 1 23 273 295 273 295 0.97

3 12 2.2e-05 0.0011 19.3 0.4 1 23 310 332 310 332 0.99

4 12 2e-05 0.001 19.4 3.0 1 23 341 363 341 363 0.99

5 12 0.00017 0.0084 16.5 3.3 1 23 369 391 369 391 0.98

6 12 3.4e-05 0.0017 18.6 1.3 1 23 397 419 397 419 0.96

7 12 4e-06 0.0002 21.6 1.7 3 23 427 447 425 447 0.95

8 12 0.042 2.1 8.9 1.7 1 23 453 475 453 475 0.98

9 12 1.2e-05 0.00058 20.1 2.5 1 23 481 503 481 503 0.96

10 12 7.2e-06 0.00036 20.8 2.5 1 23 509 531 509 531 0.99

11 12 4.7e-06 0.00024 21.4 1.6 1 23 537 559 537 559 0.98

12 12 4e-06 0.0002 21.6 0.4 1 23 565 587 565 587 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.8e-05	0.0019	18.5	0.6	1	23	245	267	245	267	0.97
2	12	0.00014	0.0068	16.8	6.4	1	23	273	295	273	295	0.97
3	12	2.2e-05	0.0011	19.3	0.4	1	23	310	332	310	332	0.99
4	12	2e-05	0.001	19.4	3.0	1	23	341	363	341	363	0.99
5	12	0.00017	0.0084	16.5	3.3	1	23	369	391	369	391	0.98
6	12	3.4e-05	0.0017	18.6	1.3	1	23	397	419	397	419	0.96
7	12	4e-06	0.0002	21.6	1.7	3	23	427	447	425	447	0.95
8	12	0.042	2.1	8.9	1.7	1	23	453	475	453	475	0.98
9	12	1.2e-05	0.00058	20.1	2.5	1	23	481	503	481	503	0.96
10	12	7.2e-06	0.00036	20.8	2.5	1	23	509	531	509	531	0.99
11	12	4.7e-06	0.00024	21.4	1.6	1	23	537	559	537	559	0.98
12	12	4e-06	0.0002	21.6	0.4	1	23	565	587	565	587	0.97

Sequence Information

Coding Sequence: ATGGAAAATCCTCACTGCAACGACACAATATGCCGCACTTGCATGAGCAAGGGACAGAATTTACAATCAATTTTGGAATACGAAGGTGTCAGTAAACTACGAATTAGCGAAATATTAATGACAACAGTGCCGCAGCTCCACATCCAACCGGGAGCCGATAAATTGCCAGTGCTAATATGTGGCGTGTGCCTCAATAAGCTTACTATTGCATATCACTATCAGCAATTGTGCATCCAAACTGATAAACGCTTAAAGGCGATGCTGGTTCAGGATGGAGGAGATGCTGATGAGAATCAGATGgatgtagaaaaaaaactaatagacGTGTGCTTCCTAAACGAAATAGTCACAGATCCATTAGTGCCCAACAATGCTACGGCGCTGCCGCTGCAAGACACTTCcattaaaatcgaaaatgaGCCAGAGTGTCGAGCTTTTATCGATGATCACGAAGAAGATGCGGATAGTCCGTTTAAATCGGCAGCTTTGGATACGGCGTCGGCAAAAGACGGCGATGGCGATGGTGAAGATGAAGATGTTGACGATGCACAGGAATATCTGGAACATTATTCTGATGCCGACTGCAATGAGGATATTGATGAAGCCGATGTCGATATTAAACCAGCTGAGCCCAGGCGAAAGGGTACAACTGCACGCATATCCAGCCATCACAACGAAACTGGCGTGgatgaaattgaaaaGCCCGATATACGCAATCGTCGTAGTGGGCATTATCCATGTCCACATTGTCTCAAAGATTTCGATCGTCCTTATCGATTACGTCGCCATATCGTTGTACATTCCAACAAGCGACTACACGAATGTGATATTTGTAAATATCGTTTTTCTAccgaaaatcatttgaaacgtcACAAATCTACGCACAACAGTGATGACGCACCGAAGAAGGCCACACCACCCGACGGCTACAAATGCGCAGAATGCCCACGCCGCTTTGAGAAACGTGAATCTCTTTCCGCACATTTGCAAAGTCATCGTCGCGCAAACCCACAGCAATCGTTTCAATGCGAATATTGCCCgaagaaatttgtgaaatttacgCTACTTACGAAACATTCTCGTACCCACCCCGAAAATCAAAAGTTCAAATGTCATTTGTGTGAGAAAACCTTCGGTTTGAATGCGCATCTCATCGAACATTTGCAAAAACATAGCGGCATTAAGAAATTCGTATGCATCCACTGTGATAAAGCCTTCCAACAGAATGGCACTCTTAAAGAACACATACGCACCCATACCGGCGAAACGCCACACCTTTGTCCAGAGTGCGGCAAATCTTTCAAAAATGGATCTAATATGCGTCAACATTTGCTGCGGCACTCCGATGAAAAACGCTACCGCTGCCAAGAGTGCCCCAGCAAATTTGCCTGCCAATCGGACCAAATTAAGCACATGTCTGTGCATCGTAAGTGCAATGCACACATTTGTGATATTTGCGGCTCTAGCTTTTCACGCTCGTATACGCTTAAGAAACACAAGCAAATACACAGCGGCAAGCGTCCGTATAAATGTGAAGAGTGTAATATGAGCTTTGTTTTCATCGACCACATGCGCCGTCACATACGCACTCATACTGGGCACAAGCCgcataaatgcaaatattgcgATCGTGCTTATGCCGAGAGTGGCGATTTAAATAAACATCTCCGTTCACATGTTGGCGAGAATACGTACATGTGCGACGAATGCCCGAAggcttttaaatataaaaaggaGTTGCAATTGCATATAATTCAGCATTTTAAACAATCGCAATtcgaaacaaaaacagaaatcgTATCTACAGCAGAGTCGGAGGTGTCGTCAACAAAAGCAaccacaccaacagcaacagtaatgGAAACGGCGACAACTGTGTCATCTGAAGCTTTAgattaa
Protein Sequence: MENPHCNDTICRTCMSKGQNLQSILEYEGVSKLRISEILMTTVPQLHIQPGADKLPVLICGVCLNKLTIAYHYQQLCIQTDKRLKAMLVQDGGDADENQMDVEKKLIDVCFLNEIVTDPLVPNNATALPLQDTSIKIENEPECRAFIDDHEEDADSPFKSAALDTASAKDGDGDGEDEDVDDAQEYLEHYSDADCNEDIDEADVDIKPAEPRRKGTTARISSHHNETGVDEIEKPDIRNRRSGHYPCPHCLKDFDRPYRLRRHIVVHSNKRLHECDICKYRFSTENHLKRHKSTHNSDDAPKKATPPDGYKCAECPRRFEKRESLSAHLQSHRRANPQQSFQCEYCPKKFVKFTLLTKHSRTHPENQKFKCHLCEKTFGLNAHLIEHLQKHSGIKKFVCIHCDKAFQQNGTLKEHIRTHTGETPHLCPECGKSFKNGSNMRQHLLRHSDEKRYRCQECPSKFACQSDQIKHMSVHRKCNAHICDICGSSFSRSYTLKKHKQIHSGKRPYKCEECNMSFVFIDHMRRHIRTHTGHKPHKCKYCDRAYAESGDLNKHLRSHVGENTYMCDECPKAFKYKKELQLHIIQHFKQSQFETKTEIVSTAESEVSSTKATTPTATVMETATTVSSEALD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -