Pscu003635.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- -
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:102275987-102279050[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00029 0.015 15.7 1.5 1 23 205 227 205 227 0.96 2 17 0.00067 0.033 14.6 1.6 1 23 233 255 233 255 0.98 3 17 1.1e-05 0.00056 20.2 2.1 1 23 270 292 270 292 0.99 4 17 0.017 0.87 10.1 1.9 1 23 301 323 301 323 0.97 5 17 0.0011 0.055 13.9 2.2 1 23 329 351 329 351 0.98 6 17 0.035 1.8 9.2 4.5 2 23 509 530 507 530 0.88 7 17 0.00012 0.0061 16.9 1.6 1 23 536 558 536 558 0.98 8 17 9.1e-06 0.00046 20.5 0.6 1 23 573 595 573 595 0.98 9 17 9.2e-05 0.0046 17.3 2.0 1 23 604 626 604 626 0.98 10 17 4.3e-05 0.0022 18.3 5.4 1 23 632 654 632 654 0.98 11 17 3.7e-06 0.00019 21.7 1.8 1 23 664 686 664 686 0.98 12 17 0.00054 0.027 14.9 5.7 3 23 694 714 692 714 0.95 13 17 2.5 1.3e+02 3.3 7.2 1 23 720 742 720 742 0.97 14 17 7.3e-05 0.0037 17.6 2.1 1 23 748 770 748 770 0.97 15 17 2.3e-05 0.0012 19.2 0.9 1 23 776 798 776 798 0.99 16 17 1.6e-06 7.9e-05 22.9 0.7 1 23 804 826 804 826 0.99 17 17 0.00016 0.0078 16.6 0.5 1 23 832 854 832 854 0.97
Sequence Information
- Coding Sequence
- atggaaaattcctATTGCAACGACACAATATGCCGCACTTGCATGAGCGAAGGACAGAATTTACAATCAATTTTTGAATACGAAGGTCTCAGTAAACTACGAATTAGCGAAATATTAATGGCAACGGTGCCGCAGTTGCACATCCAACCGGGAGTTGATAAATTGCCAGTATTAATGTGCGGCGAGTGTTTGAAAAAGCTTACTATTGCATATCACTATCAGCAATTGTGCATTCAAACTGATAAACGCTTAAAGGCGATGCTGGTGCACGATGGAGGAGAAGCTGATTGTGATCAGCAGCAGCATGACGAGGAGCGCATGGacagagaaacaaaaatagaaatactaATGCCTGAAGAATTTGACATAGATCCATTAGTGCCTAATGATGATACGTTTCTGGCGCTGAATGACAGTTGCAGTAATGTCGTCAATGAGGCCGAATGTGATGAATTTCTTTATAGTGGTGCAGTCGATACGAAAGAGACAACTATGGCGACAACGGCCAAAGAAGATGGTAATTATTTACCAGCATGCACTTTCAGTGATTGCAACGAAACTTTCGttgatgaaattgaaaaAAGTGATAAATTCTATCATTTCAATGGGCTTTATCCATGCCTAGTTTGTAACAAAACTTTCGATAGTTCATTTCTTTTACATCGACACACCGTAGTTCATTCCATCACACGACCCTATCAGTGTGATATTTGTAAAAGCCGTTTTACTACAGGGAATCAGTTAAAACAACACAAAGCGACACATAGCAACGCTGAATCTGCAAACAAAGAAGCTCTATCGGATAGCTACCAATGTCCACATTGTCCCCGCCGCTTTGAGAAAAGTGAATCATTGTCAGCACATTTTCGAAGTCATCGTCGTGAAAACCCACATCAAATTTTTCAGTGCAAGTATTGcccaaaacaatttttgaaatataggcGTCTCACGATACATGCACGCATACATcctgaaaaccaaaaatttaaatgtcattTGTGTGAGAACAAATTTGCTATAAGTTCagatttaaaaaatcatttggaAAAACATACTGGCGTAAAGAAATCCGTATGCATACAACGTGATAAagGGAACACATGTTCACCCACATCGGTGAAGCGCCACAACTCTGACCACAATGTGGCAATGCTAGTTCATGATGCTGAAGATGCTGATGTTGTGCAACAGCAGCGGAAGAACGTGGATCTTATGGATatagaaacaaaagaaatagaaattttattgcCGAAAGAACTTGCCATAGATCCATTACTGCATAATAACTATTCGTTGCATACCAATTGCATCAAAATAGAAACTGGAACCGATTGTGAAGAGTTTCTCGATAGTGTAGAGGGTAAGGATGAGCTATGTAAAGCGATAACTAATGATAAGGCACCGACAGCAACTGAAGAGGACGGTATTAACGTAGCAGCATGCACTTCCCATGATCAAACTGATGAAACCGGCGTAAACGAGattgaaaaACCTGATGTACGCTATCGTGGTAAAGGGCATTGTCCGTGCCTGGTTTGTCACAAGAAATTTGACACTCCATTTCTCTTAAGTCGACACAGCGTAGTTCATTCCATGACACGACCATATGAGTGTGATATTTGTAAATATCGTTTTACAACCGAGAATCTGATGAAACGTCACAAAGCGACACATAGCAACGCTGCATCAGCAAACACAGAAACACCACCTGATGGCTACAAATGTCCAGATTGTCCTCGCCGTTTTGAGAAAAGTGAATCACTCTCAGCACATTTTCGACTTCATCGTCGTGCAAATCCACATCAGATTTTTCAATGCAAATATTGtccaaaacaattttccaaatttgggCGTCTCACACAACATGCACGCATACATCCCGAGaatcataaatttaaatgtcaTTTGTGTGAGAAAACATTCGCCTTAAATTcgcatttaaaaaatcatttggaGAAACATATTGGCctaaagaaaaaggaaatgaaattcGTATGCGTACACTGTGACAAAgCTTTCCAAAATAATCGCAGTCTTAACGAACACATGAATACCCACACCGGCGAGAAGCCACATCTCTGTCAACAATGTGGCAAAGATTTTAGGCAACTCTCTTGTTTGCGTCAACATCAGCTAAGGCACTCCAAAGAGAAACGCTATCATTGCCAAGAGTGTCCCAGTAAATTTTTCTGTCATTCGGATCTTAGCAAACACATGTCTGTACATCGCACCACCAATCCACATACTTGTGATATTTGCGGTTCGAGCTTTTCACGTTCATACGTGcttaacaaacacaaacaaatacatagcGGCGAGCGTCCGTACAAATGCGTAGAGTGTAATATGAGCTTTGTTTTTATCGGTAGCATGCGACGTCATATGCGTACTCATACTGGACAAAAACCATATCAATGCAAATATTGCGATCGTGCTTATTCCGCTAGTGGAGATTTAACTAAACATTTACGTTCACATGTTGGCAAGAATACGTACATATGTGACGAATGTCCAAAggcttttaaatatataaagcagctacaattacataaaatgcaacattttaaagaaaaacatttagaGTTAGAAACAGCAACTGCAGCAGTAtcgtcagcaacagcaacaaaggaATCGTCTTCAATAACACCAACAGCGATAGAAGTATTATTGACAACAACAGAAGGACACACAACTGCGTCAATTGGAgttgtaatttaa
- Protein Sequence
- MENSYCNDTICRTCMSEGQNLQSIFEYEGLSKLRISEILMATVPQLHIQPGVDKLPVLMCGECLKKLTIAYHYQQLCIQTDKRLKAMLVHDGGEADCDQQQHDEERMDRETKIEILMPEEFDIDPLVPNDDTFLALNDSCSNVVNEAECDEFLYSGAVDTKETTMATTAKEDGNYLPACTFSDCNETFVDEIEKSDKFYHFNGLYPCLVCNKTFDSSFLLHRHTVVHSITRPYQCDICKSRFTTGNQLKQHKATHSNAESANKEALSDSYQCPHCPRRFEKSESLSAHFRSHRRENPHQIFQCKYCPKQFLKYRRLTIHARIHPENQKFKCHLCENKFAISSDLKNHLEKHTGVKKSVCIQRDKGNTCSPTSVKRHNSDHNVAMLVHDAEDADVVQQQRKNVDLMDIETKEIEILLPKELAIDPLLHNNYSLHTNCIKIETGTDCEEFLDSVEGKDELCKAITNDKAPTATEEDGINVAACTSHDQTDETGVNEIEKPDVRYRGKGHCPCLVCHKKFDTPFLLSRHSVVHSMTRPYECDICKYRFTTENLMKRHKATHSNAASANTETPPDGYKCPDCPRRFEKSESLSAHFRLHRRANPHQIFQCKYCPKQFSKFGRLTQHARIHPENHKFKCHLCEKTFALNSHLKNHLEKHIGLKKKEMKFVCVHCDKAFQNNRSLNEHMNTHTGEKPHLCQQCGKDFRQLSCLRQHQLRHSKEKRYHCQECPSKFFCHSDLSKHMSVHRTTNPHTCDICGSSFSRSYVLNKHKQIHSGERPYKCVECNMSFVFIGSMRRHMRTHTGQKPYQCKYCDRAYSASGDLTKHLRSHVGKNTYICDECPKAFKYIKQLQLHKMQHFKEKHLELETATAAVSSATATKESSSITPTAIEVLLTTTEGHTTASIGVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -