Pscu006704.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- su(Hw)
- Assembly
- GCA_958295655.1
- Location
- OY282450.1:24192261-24204312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0018 0.088 13.3 0.8 2 19 20 37 20 39 0.95 2 26 0.00023 0.012 16.0 1.5 2 23 151 173 150 173 0.94 3 26 0.095 4.8 7.8 0.3 1 23 179 201 179 201 0.95 4 26 0.0048 0.24 11.9 3.5 1 21 208 228 208 229 0.93 5 26 0.0002 0.01 16.2 1.4 1 22 240 261 240 261 0.96 6 26 0.0021 0.1 13.0 2.4 1 23 273 295 273 295 0.95 7 26 8.8e-06 0.00044 20.5 1.1 1 23 301 323 301 323 0.97 8 26 8.9e-05 0.0045 17.3 1.6 1 23 329 351 329 351 0.98 9 26 8.8e-05 0.0044 17.3 2.2 1 23 357 379 357 379 0.97 10 26 0.012 0.6 10.7 0.9 1 23 383 406 383 406 0.98 11 26 3.2e-05 0.0016 18.8 6.7 1 23 546 568 546 568 0.98 12 26 0.00012 0.0061 16.9 0.6 1 23 579 601 579 601 0.95 13 26 0.052 2.6 8.6 0.5 1 13 607 619 607 626 0.80 14 26 0.43 22 5.7 4.5 2 23 789 811 788 811 0.84 15 26 0.059 3 8.5 0.3 1 23 817 839 817 839 0.97 16 26 0.01 0.5 10.9 0.7 1 22 846 867 846 870 0.88 17 26 0.00015 0.0073 16.7 0.8 1 23 941 963 941 963 0.96 18 26 7.4e-05 0.0037 17.6 1.2 1 23 969 991 969 991 0.97 19 26 0.015 0.75 10.3 4.8 1 23 997 1019 997 1019 0.98 20 26 0.00012 0.0062 16.9 0.7 1 23 1025 1048 1025 1048 0.97 21 26 0.0049 0.25 11.9 0.1 1 20 1052 1071 1052 1072 0.96 22 26 0.028 1.4 9.5 0.5 3 23 1124 1141 1123 1141 0.83 23 26 0.00023 0.011 16.1 1.6 1 23 1147 1169 1147 1169 0.97 24 26 0.0014 0.07 13.6 3.8 1 23 1175 1197 1175 1197 0.98 25 26 0.00012 0.0061 16.9 0.5 1 23 1203 1226 1203 1226 0.96 26 26 0.00066 0.033 14.6 1.7 1 23 1230 1253 1230 1253 0.90
Sequence Information
- Coding Sequence
- ATGGAAGcaaatgaattaataaatacCACCAGTTCTGAATCGAACAAAGCTCAGAATGAATGTAGTGAATGCTCTAAAACTTTCACTAGTCCCAATGATTTTAAACAACATTTTGAACTTTGTTGTTTAAATAATGAAATCACTGCCTCTACAGCTGCTACAAATTATAATACTATTAATCCAAATGAAGTCAATGATGACGCGGATGGTGGTCTCAAAGAAAAGATTCTCCCTAATGAAGTACTTAACGCAGATTCCAAAACACATTCAAATGATGAACAATTAACGGAAAATACagaaacactaaaaacattagCTGGTTACAACGTACGCAAAGcggaaatgtttaaaaatttggcGAAGGTTGAAAAAGATGCAGTTACTATGGAGGCCaaagatatttgtttttgttgcgacGAGAGTTATGACACATTTCATCTTGGACAAATACAGTGCTCTTATTGTAGGAAATCTTTCAAATCACAATTAAGCTATGAACGTCACATTTTCATAACTCACTCTGAAATCGAAGATTATCCATGCAATATTTGTAATGCTAAGATGCGCAGTAAAACACTGTTGAAACTACATGCAGAACAGCATCAGAATAGGGGAACGCCTTTTGCATGCAAAGACTGCGGCAAAGAGTTTAAGCGCGAATACGATTGTAGACGACATCGAAAGTATTCAGTGTGCGggcaaaatgataaaaatgCATTCAGTTGCAAAAATTgcgacaaaaaatttaattatttacctaGTCTACGTGAACATATGAAGAAAAACTGTGGCACAACGGTTTCGAATAAGCCAAGACATAAGTGCAGCATTTGCGAGAAAACTTTTAGCAGTTTATGCGATTTAGACATTCATGCTACAGTGCATAGCGATGAGCGCCCCTTTGAATGCGATGTGTGCggtaagaaatttaaaaggttGCGATTGTTGAGGAATCATCGTATCCTTCATACCAACGAAAGGCCATTCATATGCGATGtgTGCGGTTTAACATTTAAAACGAAACGTCTAAAAGATCGTCACATGAGGCGTCATATTAGCGAACCAGTTCACCCTTGCGATGAATGTGGCaggaaattttttcaaatgtcAGAGTTAAGAACCCACTTGAAGCAGCATATAAAACCCTACGAATGTGATATGTGCGATGATAAattcaaaactgaaaaaataTTACAACGGCATCTAAAACGTGTACATAGGAGACGCAAAGTTGCAATTAAACAAAAGAAGGAACTTCTCAATAAGCGCAAACGTGCATGTGATAAAGCCGACACAAACGATAGAGCAGAAGATGCTATTGTTTGTAAGATCGAAGAAAATTcatcaaatgaaaatgaattcatTACAAATGATGAAATTGTTGTATCAccaaaagtatataaaattgaagATGAGTCATCAAATGAAAGTGAAATCATTACGAATGATGATATTGATGACATGCACTTAACCACAAATATAATTCCCGCTCAAGTTGCACCAAAAACACAAGAAGTACACAGGCAACCTTTGCCTGGTTATGATTTGCGTAAAgcagaaatgttaaaaaatctGGATCAGATTGAAACGGATGCAATTGCCATGGAAATGTGCGGCCAAGGTGATACAGATGCATTTAAGTGTAAGCagtgcaataaaatatttaagtacgcGCACAATCTACGTAAGCATACGCAGAAACACTATGGTATACTATCCGCGAATAGGTCTAAGCATATATGCATGATTTGTGAGAAAACCTTCAGCTATTTATCCGATTTAAAGGCTCATGCTACAGTGCATAGTGAAGAACGGCCATTTGAATGTGATTTATGTGATAAGAAATTTAAACGATTGAGATTGGAACGGCACGTAAAATGTATACATAGTACTAACAAATATGACACACACGAAAAAGATGACGCTAATCCACTTATAATTTGTAAGCTCGAAGCCGATTTagcaattgaaaatgaattcaTTACAAACGATGCAGTTGGTGCACCCTCGAAAATATATAAACTTGAAGATGATGAATCATCGAGTGAGATGAAATTTAGTATAGACATCGTTGAAGATGATGGTGGCGCTCACATACAACAGTTTAATGTTATTGAAATACATTGTACAAGTCCCAAAATGCATCCATATGATGGACCGGaattaaatgcaattacaaTACCCGCCCGAACTTCAGCAGAAAcgcaagaaaaacaaatatatccATTAGCTATCAATCAAATTTGTAAAGCAGACATGTTAAATAATCTGGATAAGATTGAAAAGGAAGCAATTATACTGGAAAAAGAAGGTGTTTGTTTCTGCTGTAACGAGAGCTATGATACATGTCATTTTGGTATCATAAAATGCTGCATTTGTCGAAAATCTTTCAAATCCCAATCAAGCCATGACCGTCATGCATTCATGATACATTCTGAATTCAATGATTTTCCATGTACCATTTGCAATGCGAAGATGCGCAGTGAGAATCTATTGAAACTGCACATGGAACAGCATCGGAATCGTGGCATGTTATATGCGTGCAAAGTGTGCGGTAAAGATTTTGGGCGCGAATCTAATTGGAAATTTCATCAAAAattaaaaCTTCATACTGAATGTGgacataatattgaaaaaatcaatGCAATCGATAATGAAGAAGTTCTTACGTCACCTAAACGTAATAGACTCGCAGCAGATTCATCAACTGACAATAAACTTTCTACATCACCAAAAGTGCATAAACTCCAAGACGATTTATCAAATGCCATGGACATtattgatgacgatgatggtgcACACCTACAATTCAAAGAAGTGCATATGTGTCGTAtttgtaagaaaatttttaccaaacCAGCCGATTTGAAgaTTCATGCTGAAACGCATAGTGAGGAGCGTCCCTTTGAATGCGATTCGTGTGATAAGAAATTTAAACGAGTTGGGGATTTCAGGAGACATCGTATCATTCATACCGACCAAAGACCGCACACTTGCGAAGTgTGTAATCTATCATTTAAGATGAAATTTCAGAGAGATCGTCACATGAAGCGTCATACTGACGAACCAGTCCACGTTTGCGATGAATGCGGCAAAGGTTTTGTTATATTGTACGAGTTAAATAGCCATCAAAAAAGAACACATGGGAAATCCTACGAATGCGATGCGTGCAATGAGAAATTCAAAACTGAACAAACaTTGAAAGTGCATATTGAATGTGTACATAATAGTGAGAAAACCAACCCAAACGATGGTGAAGAAGTGGTCAGGTCACCTAAACATCGTAAAACCGAAAACGATCTATCAAATGCGATGGACATTGTCGATGTCGATGATGGTGTACACGTACATGAGAAAGAATTACGTATGTGCCCCATTTGTAAGAAAAGCTTTACCAATTTGAAGGTTCACGCTATTACGCATAGCGAGGAGCGTCCCTTTGAATGCAATTCATGCTATAAGAAATTTAAACGAGTGGGGGATTTAAGGAAACATCGTATAATTCATACGAAACAAAAACCATACCCATGCAAATTgTGCAATCGATCATTTAGAATGAAATTTCAGCGAGATCGTCACATGAAGCGCCATACCGACGAACCAGTCCATATTTGCAATGAATGCGGCAAAGGTTTTGTTATATTGTACGAGCTAAATAGTCATCAAAAAAGAGCACATGGAAATTCCTACGAATGCGATACGTGCAAtgagaaatttaaaactaaaaaaaaatTGGAAAATCATAATTTCATCATACACAGTGTGACAAATACTCTGTGGAACAATGTAGATACGTTCAAATGTACTGAATATGAGGCTACATTTTCGACCAAAGAAGATTGTAATGGGCATTTGGAAAAAGAATGTGATACAGCTCTCGACGTGGATGGTTCATCTTTTGTTGATGGTGAAGAACATTTAATCGACGCATCTGCTATATCGGAGGCATATACCTCTGATGGGCTAGGCGAAAATGAGGTTCTGTTGTCAGATCCAATCGACTGTGAAGAAGATCCATTAAATGACTGA
- Protein Sequence
- MEANELINTTSSESNKAQNECSECSKTFTSPNDFKQHFELCCLNNEITASTAATNYNTINPNEVNDDADGGLKEKILPNEVLNADSKTHSNDEQLTENTETLKTLAGYNVRKAEMFKNLAKVEKDAVTMEAKDICFCCDESYDTFHLGQIQCSYCRKSFKSQLSYERHIFITHSEIEDYPCNICNAKMRSKTLLKLHAEQHQNRGTPFACKDCGKEFKREYDCRRHRKYSVCGQNDKNAFSCKNCDKKFNYLPSLREHMKKNCGTTVSNKPRHKCSICEKTFSSLCDLDIHATVHSDERPFECDVCGKKFKRLRLLRNHRILHTNERPFICDVCGLTFKTKRLKDRHMRRHISEPVHPCDECGRKFFQMSELRTHLKQHIKPYECDMCDDKFKTEKILQRHLKRVHRRRKVAIKQKKELLNKRKRACDKADTNDRAEDAIVCKIEENSSNENEFITNDEIVVSPKVYKIEDESSNESEIITNDDIDDMHLTTNIIPAQVAPKTQEVHRQPLPGYDLRKAEMLKNLDQIETDAIAMEMCGQGDTDAFKCKQCNKIFKYAHNLRKHTQKHYGILSANRSKHICMICEKTFSYLSDLKAHATVHSEERPFECDLCDKKFKRLRLERHVKCIHSTNKYDTHEKDDANPLIICKLEADLAIENEFITNDAVGAPSKIYKLEDDESSSEMKFSIDIVEDDGGAHIQQFNVIEIHCTSPKMHPYDGPELNAITIPARTSAETQEKQIYPLAINQICKADMLNNLDKIEKEAIILEKEGVCFCCNESYDTCHFGIIKCCICRKSFKSQSSHDRHAFMIHSEFNDFPCTICNAKMRSENLLKLHMEQHRNRGMLYACKVCGKDFGRESNWKFHQKLKLHTECGHNIEKINAIDNEEVLTSPKRNRLAADSSTDNKLSTSPKVHKLQDDLSNAMDIIDDDDGAHLQFKEVHMCRICKKIFTKPADLKIHAETHSEERPFECDSCDKKFKRVGDFRRHRIIHTDQRPHTCEVCNLSFKMKFQRDRHMKRHTDEPVHVCDECGKGFVILYELNSHQKRTHGKSYECDACNEKFKTEQTLKVHIECVHNSEKTNPNDGEEVVRSPKHRKTENDLSNAMDIVDVDDGVHVHEKELRMCPICKKSFTNLKVHAITHSEERPFECNSCYKKFKRVGDLRKHRIIHTKQKPYPCKLCNRSFRMKFQRDRHMKRHTDEPVHICNECGKGFVILYELNSHQKRAHGNSYECDTCNEKFKTKKKLENHNFIIHSVTNTLWNNVDTFKCTEYEATFSTKEDCNGHLEKECDTALDVDGSSFVDGEEHLIDASAISEAYTSDGLGENEVLLSDPIDCEEDPLND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -