Pscu000938.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- bab2
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:24077316-24078938[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.8e-16 9.1e-13 47.7 0.0 2 44 348 390 347 391 0.94 2 3 0.0037 5.8 6.7 0.0 23 37 416 430 405 436 0.86 3 3 2.6e-15 4.1e-12 45.6 0.0 5 41 460 496 459 498 0.90
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAATGGATGGGTCATTCGACCACTATCTTCGACATACAGCGGAATCTGCGCAACGATCCGCATAGTTGTGAAGTAACTTTGGTCGCAAAAGGACATTCTGTACGGGCTCATCGGTTTGTGCTCTCGTCATGTTCAGATTTATTGCGAAACCTTTTGATAGAGGTCCCAATGGGGCAGGAGGCTACTATAGTTGTTCCCGATATAAAGGGCACATTGCTTGACAGTGTGTTAGCCTTCATTTACATGGGAGAGACAAGTCTAACTTCGAGCAACTTATCCGAATTCCTGGAAGCTATAAACATATTGGGTATAAAGTCGGCTATAAGTTTCGAGTGCAATACAGCAACGTTAGCTGGTGGTGTTGCAACAGAAACTTTGCCCGGGAAAACAATAACTGAAATTCAAATGGGACAAGAAGAATTGATAGAACAAGATAATATGACTGAACAAAAGATTGAGcaACCATCAAGCATTATTACAGAACAGCAAGCAAATACGCGAGAGTTGGAGTTTCTTGATGTCTACAATGACACGCCACACCACAAGATTACCTACTCCATTGAGCATATGCCTGTCACCAGCTCagctaatgaatttattttaacagaAAATTCTGGTACATTCACGCTTACACAAAATCCCAAACTTGAGAATGCTTCTAGTTCTGACTCAGAGAAAATTGGTGAAATGGATGATAACGACGATGCGCATATTATTGAAGAGTACAGTAGTGGCGCTGATCCAATTATTGAAATCGATAATAGCGTCACCAATGCGAATACGCCCAGTGGAATAGCAACAACTGCCACACATAGTACAGCAGCAGTTTTAGAAATGAAACCTAAAATTAGggctataaaattaaaatcagcaGCTTCGAATATAGCGGCCGtagcacagcagcaacaactacaacaccagcaacagcaacaagaactgGAAGAACCAATAGACATCAAACTCGTCACATCTGCCGCCGATCCCATTTCAGTGCTAAAGTCGGAATCCTTTTCCTTTAGTGATTCGAATGAAACTTCACTGGACTTATCTGTAAATGCTGTAATAAATGAGGGTATGAGCTTGCAGAAGGCTGCACAAAAATTTGATATATCCAAGACTGTACTATGGCGTCGTGTACGCAAACATCCGAACTACATGAAGACATCTCGTGAGAATCCggtactctccttggcatacgaACGCCtcaaaaatggtgaatctttaAAGAACATAAGTCGTGAATTAGATATACCTATGTCAACTCTACATCGTCATAAAGTAAGGTTGGCGCAACAAGGACGCCTGCCGGATTGTGTGACATTTAAGAGACGTGACTCAAATACAAAAGATGAGTTGAAAGTGAAACTTGGGAAAGCAGTTTACGCTTGCGTGCACGAGGGAATGTCACAGAATCATGCTGCCAATTTGTTTGATATACCGAAAAGCACGTTGTGGCGCCACCTACAGAAACGTGTAGCCGAGGCGGAACTTTCGGAACGTATCGAAAAAGATAATATAAAGGAAGAAGTAATACTATCGTAA
- Protein Sequence
- MNHLKWMGHSTTIFDIQRNLRNDPHSCEVTLVAKGHSVRAHRFVLSSCSDLLRNLLIEVPMGQEATIVVPDIKGTLLDSVLAFIYMGETSLTSSNLSEFLEAINILGIKSAISFECNTATLAGGVATETLPGKTITEIQMGQEELIEQDNMTEQKIEQPSSIITEQQANTRELEFLDVYNDTPHHKITYSIEHMPVTSSANEFILTENSGTFTLTQNPKLENASSSDSEKIGEMDDNDDAHIIEEYSSGADPIIEIDNSVTNANTPSGIATTATHSTAAVLEMKPKIRAIKLKSAASNIAAVAQQQQLQHQQQQQELEEPIDIKLVTSAADPISVLKSESFSFSDSNETSLDLSVNAVINEGMSLQKAAQKFDISKTVLWRRVRKHPNYMKTSRENPVLSLAYERLKNGESLKNISRELDIPMSTLHRHKVRLAQQGRLPDCVTFKRRDSNTKDELKVKLGKAVYACVHEGMSQNHAANLFDIPKSTLWRHLQKRVAEAELSERIEKDNIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470652;
- 90% Identity
- iTF_01470652;
- 80% Identity
- iTF_01133039;