Pven011265.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- stc
- Assembly
- GCA_012654025.1
- Location
- CM022874.1:5904250-5907678[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 2.1e+04 -4.2 1.6 15 19 469 473 468 473 0.81 2 14 0.092 9.4e+02 0.2 0.4 4 10 503 509 502 509 0.96 3 14 7.5e-08 0.00077 19.6 14.5 1 18 520 536 520 537 0.97 4 14 4.4e-09 4.6e-05 23.5 14.6 3 19 575 591 573 591 0.92 5 14 2.4e-06 0.024 14.8 9.7 1 18 629 646 629 647 0.92 6 14 2 2.1e+04 -5.0 2.3 5 10 678 683 678 683 0.91 7 14 0.00028 2.8 8.2 11.8 1 19 689 711 689 711 0.88 8 14 0.00057 5.8 7.2 9.2 1 11 750 760 750 761 0.95 9 14 8.2e-10 8.4e-06 25.9 14.0 1 19 778 796 778 796 0.98 10 14 1.6 1.6e+04 -3.8 0.6 5 10 824 829 824 829 0.91 11 14 2 2.1e+04 -7.7 12.1 9 18 842 852 832 853 0.85 12 14 0.00039 4 7.7 11.9 1 15 889 903 879 906 0.88 13 14 0.7 7.2e+03 -2.6 1.7 5 10 909 914 909 914 0.94 14 14 2e-06 0.021 15.0 14.3 1 18 921 939 921 940 0.93
Sequence Information
- Coding Sequence
- ATGGACAGAGGACGGGGTCGAAacagatattataataatacacCTCAGAGGAGACGAAATTTCAATTCAGATTTAAACCCTAGTGCCAATGATTTTATACCCAATGGTCAACAATCTGAGTCTGGTCCATCCCGTTCCAGAGGAAACTATAGACATAATGAACAGAGTTCTAGAGATGATGAACAGACAAGTTTCCATAGAAATAACTTTcaagatgataataattttaagagAAGAGACAACTTTGATCGAATTCAAGAACGTTACTCGAATGACGTGAGAAACGATGAAAGTAGACAATATTTTAGTGGAAATCAAAATAGTTCAAGAAGAAAACCGTTTGAAAATAAATCCAGTAGTGCCAGAGGTAGATTTAGAAAACCAGATCAGTATCACAATAATAGTCACCAAAATGGTCCATACAGAAGTAGAAATCATGATGAAGGAGATGATGATTACAGAAATAATAGTAATCAACATGAGCACACTGGTCAATACAGGAATAATAGTAATCAACATGGTTCATACAGAAGTAGAAATCATGATGAATTAGGCGATGAACACAGAAATAATAGTTATCAACATGATCAGAATGGTCCATACAGAAATACCGGTAGTCAACATGAGAATAATGGCCAATATAGAAATAGAAATCAACATGAATCTGATGATCACTACAGAAATACCAGTAATCAACATGAAAACGGTAATAGTGTCTACAGAAATCCGAGGAACGAAAGATCCTTGCAGAACAACCGAAGAGGAAGATTTAGTTCGACCTACAATCAAAACAATTATTCCAGAGATATTCCCGTTGTGTATTCTGGTGTAATTGAATGCATTCCAACGAGTTCACATGATGATGACACTTATAGAGGAGATGATAGCGAAAGAGGTCAACCAGGCATAAATCAACGCTATCATAACGAGCATGAGAGTCAAATCAGAAGCCCAAAACATAAATCATCTTCACAGAATATTGGAAGAAGCAAGTTCAGTTCGGCAAATAATCAAAAAAGTTCTTCAGGTAGTTCCAGAGATACTGGACCAGTGATGTCGATTGGATTAATCGAATGTTTTCCAGTCAGTTCGAAGAATAGTGTGGACGATGGTGATGTCCATACGAGAAAGTTTGTAGAACGTTTTGATAAGCAACTAAACTTTCGTGATAGAAATAGTCATAACAATTCAAAGTATTCTAAAAATGAATTGGATGAAGAAGTCACATCGCAAAGAGACAAACTtatacaaattttattcaaaggaACCCAAGAATGTCTTGTGTGCTGTGAAAGAATCAAGCCCGTTCAGTCCATATGGTCATGTGGtaaatgtttcaatattttgCATCTGATGTGTACCAAGAAATGGGCAAGTTCTTCCCACACAGAAAATGGATGGAGATGTCCAGCTTGTCAGAATGTTAGTACGGTCGTACCCGAACAATACCAATGTTTTTGCAAGAAACAAGAGCTCGACACAGGCTGGAACCATTATGACATTCCTCATTCGTGCGGTGAAGTTTGTAATAAAGACTTGTATAGGGGAGACATTCCGTGTGGTCACAGATGTACTTTGCTCTGTCACCCTGGACCGTGTCCTGTGTGCGAAATAGTTTCAACAAGATATTGTGGCTGCGGTAGCACCAGCTGCCAGATGCAATGTGGATCAACCAAAACAATAGCATGTGACTCAGTGTgttcaaaaattctaaattgTCTTCAACACACGTGTGAGCAAACGTGTCATGATGGCCCCTGTCAACCTTGCAGCAAACCTGTGGAGCAGGTATGTTTCTGTGGGAATAACACGAAGGCTGTGGTTTGCTCTGAAAATGTAGAGTTGAATTATTCATGTGGGAACACATGTAATAAAAAGCTGGCCTGTGAAAATCACCTGTGTACCAATGTGTGTCATCCTGGACCATGTGACTTGTGTTATCTGCTACCCGAGTTTATCACAACTTGTTGCTGTGGTAAAACGAGAATAACCCCAAAACAGAAAAGAGTTTCCTGTTTAGATGCTCTTCCAACTTGTGAGAAAGAGTGTGGAAAGGCATTGCATTGTGGCGAACTCACTGAAAAACACAAATGCAGTGTTCAGTGCCACCCCTTGGAATGCCCACCGTGTAAGCTGACCAGCATTGTCTTGTGTAATTGCAAGCGTCGGAAGAGACAGATCCAATGCAGCGATCTCAAACCTGATTCGGTGGTCAAATGTAACATCAAATGCACGCAGATGCGCGGCTGTGGTAAACATAAATGTAATCAGTTGTGCTGCACAAATTCGGATCACAGTGTATGTCCGTTGATATGCAACAGAAAGCTTCGCTGCGGAACTCACAAATGTGAACTGCTCTGTCATCGTGGCCAATGTCCACCATGTTCAAATGTCAGCTTTGAAGAGCTGACTTGCAGATGTGGCTCTGAAGTTATTTTTCCTCCAGTTGCCTGTGGAACCAAACCTCCAACTTGTAGCCGTATGTGTTCAAGGACCCACCCTTGTGATCATCCTCCAGCTCACACGTGCCATGCAGAACCTGAATGTCCTCCATGTGTGGTATTTACTGAGAAGTGGTGTTTCGGGCGTCATCTTCAAAGAAAGAACATCTTCTGTTATTTAAAGTCTTTCTCTTGTGGCCAAACGTGTGGTAAGGTCTTGAAATGTAATCGACACGCATGCAATCTTCCTTGTCATGAAGGCGAGTGTTTAAAGCCAACGGAGAAATGTAAGCAGCTCTGTTCTAAACCCAGGCCAGCCTGCGGTCATGCCTGTAATGAAGTGTGTCATCCTGGATCCTGTCCAGGCAGCACTTGTACTGTGCAGATCAAAATATCCTGTGATTGTGGTGAACGTAGTGAGACACAACAGTGTATTGAAGACCTATCTCTTCTAGAACAATTCAAAATGACTTCCAAAGGAGAGTATAAAATTCTTGAGTGCGACGACACTTGCGCTCAGATCGAACGTAACAGAAGGCTAGCATTAGGTCTTCAAATAAGAAATcctgatttaaatttaaaactaaaaccTGTGTATCCGGATTTACTAAAACAATGGGCGAAAAAGGATCCTGACTTCTGCAGATATATTCACTGTAAACTTGCAGATCTTGTTAAATTGGCCAAAGAATCCAAACAAAAATCTCGAAGTTTTTCTTTTGAAGTAATGAATCGAGACAAACGTCAATTCATTCATCAGTACTGTGAATTTTTTGGTATTGAGTCAGTGGACTGCGACCCAGAACCCAAAAGAAATGTCCTCGTCACAGCATACAAAGATAAAGCTTGGTTACCGGGATACAGTCTTCTAGAAACTGTCCACAGAGAAAAAGGTCAACCGAAAGTTCCCATGATTCCACTAAATAAAGACGCAGGTGGTAATTGTTCAAGGAATGAAATGGTACAGTTAGGGGTGAAAAGAAGTTAG
- Protein Sequence
- MDRGRGRNRYYNNTPQRRRNFNSDLNPSANDFIPNGQQSESGPSRSRGNYRHNEQSSRDDEQTSFHRNNFQDDNNFKRRDNFDRIQERYSNDVRNDESRQYFSGNQNSSRRKPFENKSSSARGRFRKPDQYHNNSHQNGPYRSRNHDEGDDDYRNNSNQHEHTGQYRNNSNQHGSYRSRNHDELGDEHRNNSYQHDQNGPYRNTGSQHENNGQYRNRNQHESDDHYRNTSNQHENGNSVYRNPRNERSLQNNRRGRFSSTYNQNNYSRDIPVVYSGVIECIPTSSHDDDTYRGDDSERGQPGINQRYHNEHESQIRSPKHKSSSQNIGRSKFSSANNQKSSSGSSRDTGPVMSIGLIECFPVSSKNSVDDGDVHTRKFVERFDKQLNFRDRNSHNNSKYSKNELDEEVTSQRDKLIQILFKGTQECLVCCERIKPVQSIWSCGKCFNILHLMCTKKWASSSHTENGWRCPACQNVSTVVPEQYQCFCKKQELDTGWNHYDIPHSCGEVCNKDLYRGDIPCGHRCTLLCHPGPCPVCEIVSTRYCGCGSTSCQMQCGSTKTIACDSVCSKILNCLQHTCEQTCHDGPCQPCSKPVEQVCFCGNNTKAVVCSENVELNYSCGNTCNKKLACENHLCTNVCHPGPCDLCYLLPEFITTCCCGKTRITPKQKRVSCLDALPTCEKECGKALHCGELTEKHKCSVQCHPLECPPCKLTSIVLCNCKRRKRQIQCSDLKPDSVVKCNIKCTQMRGCGKHKCNQLCCTNSDHSVCPLICNRKLRCGTHKCELLCHRGQCPPCSNVSFEELTCRCGSEVIFPPVACGTKPPTCSRMCSRTHPCDHPPAHTCHAEPECPPCVVFTEKWCFGRHLQRKNIFCYLKSFSCGQTCGKVLKCNRHACNLPCHEGECLKPTEKCKQLCSKPRPACGHACNEVCHPGSCPGSTCTVQIKISCDCGERSETQQCIEDLSLLEQFKMTSKGEYKILECDDTCAQIERNRRLALGLQIRNPDLNLKLKPVYPDLLKQWAKKDPDFCRYIHCKLADLVKLAKESKQKSRSFSFEVMNRDKRQFIHQYCEFFGIESVDCDPEPKRNVLVTAYKDKAWLPGYSLLETVHREKGQPKVPMIPLNKDAGGNCSRNEMVQLGVKRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -