Pven016727.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- grn
- Assembly
- GCA_012654025.1
- Location
- CM022884.1:12377043-12406692[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-16 5.1e-13 48.6 4.0 1 35 383 416 383 417 0.97 2 2 8e-18 2.7e-14 52.6 6.7 1 35 441 474 441 475 0.97
Sequence Information
- Coding Sequence
- ATGCTTCTCGTGATGAAAGATGAAGATACAGAAAATGaagatcaaaattttgaaactcttaaatacaatgaaaaagtagaaaatttatcGTTAAACAATAGTCATCAAACTCACCATAATCAAAACGAAAATCGTTCAAATATTTATAGTAATCACGATAATAATCTTCCACAACAAAGAAGCAATAACGAAAATATTAATATAGGACACattaaaacaataattgaaGATACAAAAGAATACAATGGCAAAAatgaattagaaaataatttaaacaatcATGATGAAAATGAGAATGTTAGAAGTAGTGTACATAGAGATAGAATTATGtataaagaaaatgataaattgATATACAAAGAAGAATTAATAgattatgaaaataaagaacGGGATGGAAGAAGGAGTGTGGATCatggagaagaagaaattaataataatgagaatATGCTAGGAACGATTGAAGAACATTATATAGAAAACtataatataaagaaatataaaactATAACAACTTCTTATGGAGGaaatagttttgaaattaaatatgaaCATAATGGTGAGTCGACGAGTCTGCCAAATACGACAGGAGcTGCACCCAACGTAACCTATGCAACATTAGAAAGTGTTGGCAATCCTGTTGCCCAACAACATTCTGTAGAAACGTCTAATGGTAACATTATATCCAACACTATTGAGTACACCTCTTCTCCAACACCGGCCATTATATACAACGCTCCTAGTCCGTCATCAAATCAGTATCAATATATTAACTATCCAAGAATCACTTTGGACAACGGTCAATCTGCTGGTGTATATTATCCAAGTCCGAATACTTCACCCAATACTTTGCAACTTTATGGAATGACGACCAATTCAGctTTACCAAGTAAATATCAACATTATGAACAAACAGGATATCAAGTTAGCACAAATAACAATATTAATGTTAGCAAAGCAGATGCCTATTGGCAGAATAGTAACATAGCTGTAGAATATAACACGGGAAGTGCTGGAACAAATAACCAAAGTAATCAAAGTGGAAATGGACCTGCTAACAATAGCTATACTGATagctatattttcaataataccaACTGGCAAGACTACGACCCAAATTTGATGTTGAACATGGATATCAAAGAATGTGTCAATTGTGCAGCCAATTCTACTCCTCTGTGGCGTAGAGATGGCACGGGTCATCATTTGTGTAATGCTTGTGGTCTTTATAACAGAATTAATGGAGTCAATAGACCACCCGTCAGAACAAACCAAAAGAAAGCTTTAcagCAAACGGGAAATCGAAGAAGTGGAGTATTCTGCGCCAACTGTACAACGTCCACAACAACCTTATGGCGAAGAAATAATAATGGGGAACCCGTATGCAACGCTTGTggtctttatttcaaattgcaTAATGTGAATCGTCCTCTGACGATGAAAAAAGAAGGAATTCAAACTCGGAAACGAAAACCAAAAAGTTCGGTCTCATCTCTTTCTCCTCCATTATTAAAAACAAGTGATCACCATTCTTCAAAACATCATGGTCACCACCAACTTGTGTCTGATGGAAAGCTGATCCTTCCACATATGTTCAGCAATGGAGAGTCCCTAGTCAATTCTGATCATTACATGACCCAGTCACCCTTGCTATTACCCTCCACCGCACTTCTCAATAGACACCTTCCCAAtatGCCTCCATTAGAATCAATGATATCACGAAATAATGACAACCTAAGTGTTATTACATCGACACCCAATGTACACcatagtaataataatgaagacCGATGA
- Protein Sequence
- MLLVMKDEDTENEDQNFETLKYNEKVENLSLNNSHQTHHNQNENRSNIYSNHDNNLPQQRSNNENINIGHIKTIIEDTKEYNGKNELENNLNNHDENENVRSSVHRDRIMYKENDKLIYKEELIDYENKERDGRRSVDHGEEEINNNENMLGTIEEHYIENYNIKKYKTITTSYGGNSFEIKYEHNGESTSLPNTTGAAPNVTYATLESVGNPVAQQHSVETSNGNIISNTIEYTSSPTPAIIYNAPSPSSNQYQYINYPRITLDNGQSAGVYYPSPNTSPNTLQLYGMTTNSALPSKYQHYEQTGYQVSTNNNINVSKADAYWQNSNIAVEYNTGSAGTNNQSNQSGNGPANNSYTDSYIFNNTNWQDYDPNLMLNMDIKECVNCAANSTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRTNQKKALQQTGNRRSGVFCANCTTSTTTLWRRNNNGEPVCNACGLYFKLHNVNRPLTMKKEGIQTRKRKPKSSVSSLSPPLLKTSDHHSSKHHGHHQLVSDGKLILPHMFSNGESLVNSDHYMTQSPLLLPSTALLNRHLPNMPPLESMISRNNDNLSVITSTPNVHHSNNNEDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -