Pven011259.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- znf711
- Assembly
- GCA_012654025.1
- Location
- CM022874.1:5817743-5835558[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.067 6.2 7.7 0.9 3 20 37 55 35 57 0.86 2 13 2.4 2.3e+02 2.8 0.6 1 12 160 171 160 180 0.79 3 13 9.9 9.3e+02 0.8 0.5 2 23 460 483 460 483 0.87 4 13 0.36 34 5.4 0.4 2 23 527 549 527 549 0.94 5 13 0.009 0.84 10.4 1.0 2 23 885 907 884 907 0.93 6 13 0.00048 0.045 14.4 2.0 1 23 944 966 944 966 0.98 7 13 3.8e-05 0.0036 17.9 0.6 2 23 977 998 977 998 0.98 8 13 0.13 12 6.7 3.4 1 23 1004 1026 1004 1026 0.91 9 13 2.2e-05 0.0021 18.6 2.0 1 23 1032 1055 1032 1055 0.96 10 13 5.4e-05 0.005 17.4 0.4 1 23 1061 1083 1061 1083 0.99 11 13 0.0022 0.21 12.3 1.3 1 23 1089 1112 1089 1112 0.98 12 13 0.0011 0.1 13.3 3.7 1 23 1118 1140 1118 1140 0.98 13 13 0.05 4.7 8.1 1.1 3 23 1149 1170 1147 1170 0.95
Sequence Information
- Coding Sequence
- atgaaGACGCCATTTCTGCTAAAAATGAAGTATGAAGTTGAAGGTGAAACTTTTCAACAAGGCTTGGCTTGGCTTGATGGCTTGCTTCATTTCatgaaaCTAATAACGTGTCCCCTTTGTTGCGGCCAATGTTTTACTAGTATTAACAACCTCCGAATGCATTTGgaagagaaattgaaaaatattaaatgtccATATTGCTTCCTGCTCATTGACAATGTCAACGATTTTCCGTCTCATTTGGAGGAGTGTGGCATCAAGAAGGAGGCCACAAGTGACGAAGAGGAATATGAGGCCGAAGTAATCAGTGTTGATTTTGATGACGTCATGCTTGGTGAAGAAGTTACTCAGGAACCtacagaaaataatgaaaactttCAAACTGAGGAAGTCATTGAAGATGGAGGAAATGTTGTAGTCAGCTCTGCGGAACAAGAAGTTACATCTGAAACTGAAAATAGCTCTGGAAATgatttGTATCACTGTTCTATATGTGAAATTAGGTTCGTTAACGTTCAGGAACATCTAAAAGAGTACCACAACAACCAAGTGATCTATCTGGAGAGCCCTGAAGGCGAAGAGGAATATggtaccaaaaatttacctaagaaggaagaagaagatgctGATGTACAtttagaagaagatgaagacAGAGGGCATGATGAGCAGAGAGAAGAGCTGGAGTTGTCCAATATGCCAACCGTGGATAATGACGATAATGATCAAGCTATCTGGATCAATTGGGACTCGGTGTATTATTTATCGGTTCGCAGTCCTAGCCATCCTAAATTTGATGCCAGTCATGCTCATGATCTGGGATACTTTTTGAGAGCCAAACTAAAACATTGCAGTGTGTCTGACCTGAGTCCATTTTTCATGGAGgaCGAGTATGGAGATAGATTTTTCAGTGTACCCGTTGATACCGCCATTGATTATTTTGAAGCGTCGCATGGACGTTGTGGACCTAAACGATTTAATGGAGTTTTTACAAAACGTTgtgtaaaaattattacaaaacatTTGACTCACGGACGTATAAGACGAATTAAAGTTTACGAAAGAATCATTTCTACATCTCAGCTGTCCTTGACACAAATCTTGTTTGCTAAAAAAGCGTCGGATTCATTTGTGCCTGTCTTAGAACAGATTAATGTTAATGATGGAAATGACGAAGGAAACAAACACAAACTTTACTGGAAGTGTTCCCATTGTTCCGCAGAAATGGACTCGTGGGAGCATCACGACTGTGGAGATCAAGAAGAACTAtaTGTGGGGCATGAACGATATGAATCTAAGAATAAAGAGAATGATGATGTAACAAATGAGTATGGTGTTCCTAATGGAAAGACAATCACAATACCTGTAGAACAACGAACTTGCACACAGTGTGACAACCTTGTCTTTGATTCTCTCGAATGGTTCAAAGAACACAATACAATGTTCCATGGTGACAATCCCTCCatgaaatattccaaaaaacGATCTTTCACCTTACATATGTTCTCTGAGAGTGTGACTATAGAGGAAGATGAAATTGTTGCTGATGACGCTATTCTAGAGCCTAAAATATTGCGTACTTGTACGATCTGTGTCaaagtaaaaaatagtattGAAAGTCTTCGGAAACATTTAAAAGAGGTGCACAATGATGAGTCTATTGGTGTTGAAGAAACTGTGGAGGAAGGGGACAGCGAGGTTATGGCAGACGAGCAAAATGCACTTGGTGATCAGACCGGTCCAAGAACTAGATCTAAATGTAGAGTTGTTTCTAAGAACTCATTGACATTAGTTGAACCAGTAAATCCTAAAGTTTCTACTGTGATAAGTGAAGAAAACACGTCTACTACTAATACAGTTTATCAGAAGCCCctttataaattcaaaaatgatgGCCTAAGTTTGATAGATGTTCAGAAACGATATGTTGAATGTTGTGTCATTGAGATTGACTTCTCCAGCAACGAAGATAGTAAGTGCATCGTATGTTCCGCAGATGGCCTTGAAACCTCCAGCAAGTTTTTGAGACACATGGAAATGAAACATATTCACGACATATGTTTGGAGAGTTACttccttttaaaaagaaaatttttcaaggaaagaaaaaagagaaaaattgataTGTTCAATTCCTCGACGGATCAAGTGTGCATTGCAGACGAAGACGGGGACCAATCAGATCTGGGGGATCTTAACATTGGCACAAACAATGAAAACAATACCATATCCATTACCATTACCGAACCTCTAGAGAGCGACACCGCTGTCGATAATTTGGCCTCTGAAGATTATGAAGAGGACGTGGATGACCCTGACTCTATGGAGCAGCCTcctaccaaaaaaacaaaatatgactTAATCAAAGCAGACAATCTACCAGATTCTGTACGGAAAAAATTAGATGAACAGATAAAAAGTACGGAAAATACAGAAATAATGCAAAATACGAATGAATTAAAAATGGAATGTGAGGAGACGGTCCAAGAACCAGAAGACAGAACTAGCAAGTTGACTATTGAAGTTATGGACTATCTCAACTACAAGgaaaaacTCGAAAACAGATTAAACAAAAAGGCTGCCTTAGTTAATGAAACCAAAAAGACCATTAAACACTCTTCTGTAAGGGACTACACGGGAGATAGTACAAAGTCATGTATGACGTGTAAAGTAACGTTTTCAACTGAAAGATGgtTGGAAAGacacaaagaaatttttcacaaaaattgttCAGAGTGTCCAGTATGTTTCCTTCTTATCCAAGACCATATTATGGATGTCCACATGAAGGGGCACTCTCTTTCCAATGATAGCGGATATTCCATAGAATTTGTATGTAAGGAGTGTAACAATTCTTTTGAATCAGAAGAACATCTCAATTATCATAAACAGGTTCACCAGAATAGGGTGATGGTTATCCAGAAAGAGAGATGTCCACATTGCACGGAAGAGTTTATTGATGCAGATATGTTAAAGAATCATTTGAAAGTACACTCGACACGTCGCGTGTACACGTGCAACTATTGTCATAAACACTTCTTTATATTGGCGGAGAAAGTTGTTCACGAGAGAATCCACACAGGTGTGAAACCCTTTGCATGTGATGTTTGTGGTAAAGCGTTCAGAAAGAAGTTTAGTATGACCATGCACATGCGGCACGTCCATCTCAATGATAGAAGGTACCAATGTAACATCTGTTTAGCCAAATTCGTTACAAACTCTTCTCTCATTGTTCATACTCAACGCCATGATCTCACTCCGAGATTTAAATGTAAACTCTGTCCGAAGCTATTCACCAATACGGGTTCGAGAGCCAATCACGTTCGACGTCAACATTATGGTACAGTGGAATATGTTTGTAAACATTGCACGAGAATTTTCTACGGAATGTCTGCTTTGAAGAAACATTACAGCAAACATGAAAGTAATGAACTCAAGTACGGCTGTATGCACTGTCCACAAACCTACGGACGTTCCTTGTTCCTCAACAAGCATTTGAAGGAAGTACATGGAGACTTTGTAGAGTGA
- Protein Sequence
- MKTPFLLKMKYEVEGETFQQGLAWLDGLLHFMKLITCPLCCGQCFTSINNLRMHLEEKLKNIKCPYCFLLIDNVNDFPSHLEECGIKKEATSDEEEYEAEVISVDFDDVMLGEEVTQEPTENNENFQTEEVIEDGGNVVVSSAEQEVTSETENSSGNDLYHCSICEIRFVNVQEHLKEYHNNQVIYLESPEGEEEYGTKNLPKKEEEDADVHLEEDEDRGHDEQREELELSNMPTVDNDDNDQAIWINWDSVYYLSVRSPSHPKFDASHAHDLGYFLRAKLKHCSVSDLSPFFMEDEYGDRFFSVPVDTAIDYFEASHGRCGPKRFNGVFTKRCVKIITKHLTHGRIRRIKVYERIISTSQLSLTQILFAKKASDSFVPVLEQINVNDGNDEGNKHKLYWKCSHCSAEMDSWEHHDCGDQEELYVGHERYESKNKENDDVTNEYGVPNGKTITIPVEQRTCTQCDNLVFDSLEWFKEHNTMFHGDNPSMKYSKKRSFTLHMFSESVTIEEDEIVADDAILEPKILRTCTICVKVKNSIESLRKHLKEVHNDESIGVEETVEEGDSEVMADEQNALGDQTGPRTRSKCRVVSKNSLTLVEPVNPKVSTVISEENTSTTNTVYQKPLYKFKNDGLSLIDVQKRYVECCVIEIDFSSNEDSKCIVCSADGLETSSKFLRHMEMKHIHDICLESYFLLKRKFFKERKKRKIDMFNSSTDQVCIADEDGDQSDLGDLNIGTNNENNTISITITEPLESDTAVDNLASEDYEEDVDDPDSMEQPPTKKTKYDLIKADNLPDSVRKKLDEQIKSTENTEIMQNTNELKMECEETVQEPEDRTSKLTIEVMDYLNYKEKLENRLNKKAALVNETKKTIKHSSVRDYTGDSTKSCMTCKVTFSTERWLERHKEIFHKNCSECPVCFLLIQDHIMDVHMKGHSLSNDSGYSIEFVCKECNNSFESEEHLNYHKQVHQNRVMVIQKERCPHCTEEFIDADMLKNHLKVHSTRRVYTCNYCHKHFFILAEKVVHERIHTGVKPFACDVCGKAFRKKFSMTMHMRHVHLNDRRYQCNICLAKFVTNSSLIVHTQRHDLTPRFKCKLCPKLFTNTGSRANHVRRQHYGTVEYVCKHCTRIFYGMSALKKHYSKHESNELKYGCMHCPQTYGRSLFLNKHLKEVHGDFVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -