Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022882.1:6639992-6644539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00022 0.02 15.5 0.9 2 23 399 422 399 422 0.91

2 20 9.3 8.7e+02 0.9 8.4 1 23 645 668 645 668 0.94

3 20 0.21 19 6.1 4.1 1 23 673 695 673 695 0.96

4 20 2.8 2.6e+02 2.6 1.6 2 19 700 717 699 722 0.90

5 20 1 97 3.9 4.0 1 23 727 749 727 749 0.98

6 20 0.0045 0.42 11.4 1.0 2 23 753 774 752 774 0.97

7 20 0.0001 0.0094 16.5 3.7 2 23 832 853 831 853 0.97

8 20 4.7 4.4e+02 1.9 5.7 1 23 857 879 857 879 0.97

9 20 0.0015 0.14 12.8 0.9 1 21 893 913 893 914 0.94

10 20 0.0089 0.83 10.4 3.7 2 21 943 962 942 963 0.93

11 20 0.0086 0.81 10.5 1.0 2 20 972 990 972 992 0.93

12 20 3.8 3.6e+02 2.1 3.6 1 22 1043 1064 1043 1065 0.81

13 20 6.3e-05 0.0059 17.2 1.9 1 23 1071 1093 1071 1093 0.98

14 20 0.003 0.28 11.9 0.9 1 23 1099 1121 1099 1121 0.99

15 20 1.6 1.5e+02 3.4 2.3 1 23 1181 1204 1181 1204 0.95

16 20 0.23 22 6.0 0.2 1 23 1284 1307 1284 1307 0.96

17 20 0.016 1.5 9.6 2.8 1 23 1315 1337 1315 1337 0.96

18 20 0.027 2.5 8.9 1.3 2 21 1342 1361 1341 1362 0.95

19 20 0.00038 0.035 14.7 0.1 2 23 1450 1472 1449 1472 0.96

20 20 0.0012 0.11 13.2 0.2 2 23 1478 1500 1477 1500 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00022	0.02	15.5	0.9	2	23	399	422	399	422	0.91
2	20	9.3	8.7e+02	0.9	8.4	1	23	645	668	645	668	0.94
3	20	0.21	19	6.1	4.1	1	23	673	695	673	695	0.96
4	20	2.8	2.6e+02	2.6	1.6	2	19	700	717	699	722	0.90
5	20	1	97	3.9	4.0	1	23	727	749	727	749	0.98
6	20	0.0045	0.42	11.4	1.0	2	23	753	774	752	774	0.97
7	20	0.0001	0.0094	16.5	3.7	2	23	832	853	831	853	0.97
8	20	4.7	4.4e+02	1.9	5.7	1	23	857	879	857	879	0.97
9	20	0.0015	0.14	12.8	0.9	1	21	893	913	893	914	0.94
10	20	0.0089	0.83	10.4	3.7	2	21	943	962	942	963	0.93
11	20	0.0086	0.81	10.5	1.0	2	20	972	990	972	992	0.93
12	20	3.8	3.6e+02	2.1	3.6	1	22	1043	1064	1043	1065	0.81
13	20	6.3e-05	0.0059	17.2	1.9	1	23	1071	1093	1071	1093	0.98
14	20	0.003	0.28	11.9	0.9	1	23	1099	1121	1099	1121	0.99
15	20	1.6	1.5e+02	3.4	2.3	1	23	1181	1204	1181	1204	0.95
16	20	0.23	22	6.0	0.2	1	23	1284	1307	1284	1307	0.96
17	20	0.016	1.5	9.6	2.8	1	23	1315	1337	1315	1337	0.96
18	20	0.027	2.5	8.9	1.3	2	21	1342	1361	1341	1362	0.95
19	20	0.00038	0.035	14.7	0.1	2	23	1450	1472	1449	1472	0.96
20	20	0.0012	0.11	13.2	0.2	2	23	1478	1500	1477	1500	0.95

Sequence Information

Coding Sequence: ATGTTGAGCGAAGAAAATTATGTTTACTACGACAACGATCTTGAAGATCTAATCTCCATAGAAGATAGTAAAGATTTGCTTCGTTTGAATGAAATGAGCAACAACGGTGATAATACTAGTGATGAAGACTTTATTATATGTGATGAAACTAACTATGTTTTAAACAGAAATGCTATACAGGgagataggattttttttaataaaactaaaaatgtcTTCAAtatgaatagaaaatattataatgagtGTTTAGATAGTTCTGTATTGaatgtgaaaagaaaaatgtttcatGACTGTGATGATGGTAATGTTTTAATTGAAAACGAGTATATTGATAGTAAAGAATATTTGAATGGAATCGATCGACAAATGTTTATGAATGAATTGAACAAAGTTATATGTAGGCCAAATAAGACTCGGAAAAAAGTCAGATTTAAAGAGAAAAATGTGTGCGTAtctgtgaaaaatattaaagttgaaACGAACGAAAATGATCCCGATATTAATAATGAGAATGTGAGTGCCGTTAGTAATGTAGTTGTAAGGAGAAAGGAAAAGAATGATGGTGAAGGTAACGATTTGATGTAcaataaaaatgtgataaatTTCAATTGTCGTGAGAATGTTGAGGAAATTAGCAATTTGATCAATAATAGAAAGGAAAATTATATGATTCTTGAAGAAAATGTTGATGAAGTTAGCAACTTAATCTACAGTAAAAATGCAATGAGTTTTAGCACTCCTGAAAATTTTGTTGAAGTTAGTAATGTGGTtagtaatagaaataaaaatgcaaGTGTTTTGAACAATCACGAGAATGATAACGAAATTACGGAGAGACATGAAAATGTTGATGAAGTTAGAAACTTAATCTACAGTAAAAATTCAATAAGTTTTAGCACGCCTGACAATGTTGATGAAGTTAGCAATGTGGTtagtaatagaaataaaaatccaatGGTTTTGAATAATCACGAGAATGATAGCAAAATTACGGAGAGACATGAAAATGTTGATGAAGTCAACAATGTGGATTATAATACAAAGAATAAATCAATGGGGTTTGAGGAAAATGATAATGAAGTTGGCaataaaaattcaacaaattttgaaaagcctgggaatattgatgaaattgacAACGCGGTTAAAAATAGAAAGCAAAATCCAACGAATCTAGTTTATCGAGTACGCGAATGTAAAATTTGtgacaaaatgtttttatcaaAAGATAATTATACTGCTCATATGAAAAGCAGATTACATATTTTAAACGAAATCGAAAGAAATTATGCTTCAAGACTGAACAATGATAGTGAGAAGTTTGATGAAGCTGTTTGTATGATTGAttttattagaataaaaaatgaacatgTGCACGacaatttggatgaaaataGTTACACTCAAAATGAAACTTGGAATCAtgatattgaaattaaaaatgaaacaccTGATAAAACACAATTAACAAATAATTGGTCTATTCTGTACAATCAATTGATTCAGAAAGATCAAAACTtttatagtaataataaaaatcaaatttcaaattcaaatcgACCTGTTGAATTACAGAATGTGAACAGTTCAGAAAATCGAATGAATTCAACGAAAAATACGTCTTTACAtagacaaagaaataaaaatcatttgggATTCGGGGTTTGCGAAGATTTTCCTAGCATACCTATTAATGATATTAAAAGTGAAATACACATTGATCATGATAATGAAACTTATTTGGACATGGAGCAAGATCAtcacaaatatgaaaattattctaTGTTCAAAGAAGATAATTGGCTTACAAATGAGAACAACGAAGAGCTTGCAAATAATGAAATTCTTAAATGTCAATATTGTGATTTTAAAGGTTGTTTTCGACAAAttcaatctcatacatctgttcaTCGTAAAGATatgatttgtcatttttgtgaaCATTGTACGTTTCAATGTAAACAATTGAATGAGTTAGATAGACATTACAAAGAAAAACATCGAACAGTTCGATTtcattgtaatatttgtaatatgGACTACAAATCAATTAAAACATTTCGATCTCATGAAAAACAACATACAATATCAAAACAATGTGACTTGTGTAATTATAAAGGAACAACTCAATATCGATTATGGATTCATTGTCAAGAAGAACATGTTGGATATATATTCAAATGTAAGCTCTGTCCATTTGAAGGAAAATTCGCGAAACAATTTCATAGACACAATAAGGTTCATGTTAAATTACAATgtcaaaaatgtgatttcatagCAAGTAGTCGATCTTTAATGAGAGCTCATAAACGAACACATAAAAGATATATTTATAAGAAACTTGCACCAGCAACGAGTACAAATAATAAATCGAAacgaatcaaaaataaaaaattgaaacaacaAAATCGATTAATTTCTCGTTCACAAATAGAAGCAAACAAGACAAATACGACGTCAACTTCAATTCAAAGTCATGGAAAACAAATCAAGTGCGATGGATGTAATCAAACTTTCTGTTCGCATTATAATTTAGGAAGACATATAAGAGATCATCCTGACATATTTAAATGTACTCATTGTAGTTATGTTGGTCACaaggaaaagaaatataaaatacatttgGAAAGTCATGATCAATCTGTGATTGCTCAATCGAAGCCGTTGAACACATTTGATTGTACAAATTGTTTACgcattttctatagaaaaagTAGTCTCAGAAATCATGAAAGATTGTGTCTGAAAAATTGTAATACTAACAATGTATCAAATGAACGAATGTTTGAATTTGATGATCAAGGATCGACGAGCTTTGATTTGACTTGTAAAAAATGTACACGTAAATTTACAGATAATTGTAACTATCAATTACATCAactttattgtaaaggaaattcAAATCGAAATACTTGTAAAAAGTGTGCACGTGAATTTAGTAAAAAGACGAATTTAAAACTACATGAACTTTATTGTAAGGGAAGTCTACATGAAAgtagaaaagaaataaataattcggTAGATGAATCCAATCTTTTAGACGAATCTAGTCAAGACGACGATGACTCATatgaacaaacaaatgaaatatcaTCAAACACGTTaaatgaaacaaatgaaaactaTTTCTGTGAAATTTGTAATCgtatttttcaaacacacagaAAATATCAATTCCATTCGAATTTACATTCTGAATCGAATAATTTCGTAtgtaaaatttgcaactttAGATTTGGAAATGAACAATATTTAGAACGTCATAAAAGAACACATGATCCGTcgagaaaatataaatgtactaTTTGTAATAtaggatatttaaaaaaagattgctTGGAGGCGCACATGGCAACCCATCCGAATGAGAATACTCAAAATAGAGAAATCCTAAAATCAACAGGATcatcaaatatgaaattttcatttcctgCAGAAGAAGAAGAGGTAATTGAAAGATTATTTAATTGCAAACTTTGTGATCTTAAAGTCCCCACAAGAATGTTCAAAAAACACTTGGAATTACATGAACATTCGTTTTCATGTACTCTATGTTCTTCTCGGTTTCTTGACATTTATAATCTTCATAGACATGCGTTGCGATCGCataatgaaaaaacaattgCATTTGCTTGTACATGTGGAAAACAGCattcaaatgaaatagattTAATAAAACATTGCAAATTAAGCAAAATTAATGAGCCTTCTGTGAATGAAAAGCTAGAACAAGTACagcatttaaagaaaaaatccgaTTTAAAAACATCTGTAGACAAATCTAAACTGAATTTATCTCCTATAATTTTACTTTCacctttaaaaattcaaaaacctCAAGCTTCGTTTAAATGTGCCATGtgtgattcatattttgatAATGTTTCTATTCTTGCCAATCATATGAAAGCTTCACACTCTACAAAAGATCATAATAAATTTGTTTGTTGGGAATGTGGTTATACATGTAATAGACAATTGAAATTACATATACATGCACAAAATcattccaattttttaaaatgttttaaatgtaatactcattttatttatagaagCAGTGTATTGTCACACATTCGATTAAAAGTCTGTGAAAATAATGGTGgttcaattaaaaacacaaacaatGTTGATCTAAATAAAAACACGAACAATGTTGAtctaattaaaaacacaaacaatattgatctaattaaaaacacaaataatgaATCTAAGAAAATcgttgaaaatagtaaaaaaccaaaattaagtgttttaaaattgaaattagttAATCGATATAAAGGGGGTAAAAAGACTgttgtaaatttaaataaaattaaaaatcataaagGATCGGTTCGATGTCCagaatgttcaaaatatttttccggtggAAGCACTTTACGAACTCATATTAATATTGTTCATAGAGAGCCAACAAAGCCATGTGGATTGTGTGATCTGAAATTCCCTCGAATAGATTATTTGCAAAAACATCAGGAAAGAGTTcataatatgatttttataaagaagaaagtaaagGAAGTTCCCTCGAATTGA
Protein Sequence: MLSEENYVYYDNDLEDLISIEDSKDLLRLNEMSNNGDNTSDEDFIICDETNYVLNRNAIQGDRIFFNKTKNVFNMNRKYYNECLDSSVLNVKRKMFHDCDDGNVLIENEYIDSKEYLNGIDRQMFMNELNKVICRPNKTRKKVRFKEKNVCVSVKNIKVETNENDPDINNENVSAVSNVVVRRKEKNDGEGNDLMYNKNVINFNCRENVEEISNLINNRKENYMILEENVDEVSNLIYSKNAMSFSTPENFVEVSNVVSNRNKNASVLNNHENDNEITERHENVDEVRNLIYSKNSISFSTPDNVDEVSNVVSNRNKNPMVLNNHENDSKITERHENVDEVNNVDYNTKNKSMGFEENDNEVGNKNSTNFEKPGNIDEIDNAVKNRKQNPTNLVYRVRECKICDKMFLSKDNYTAHMKSRLHILNEIERNYASRLNNDSEKFDEAVCMIDFIRIKNEHVHDNLDENSYTQNETWNHDIEIKNETPDKTQLTNNWSILYNQLIQKDQNFYSNNKNQISNSNRPVELQNVNSSENRMNSTKNTSLHRQRNKNHLGFGVCEDFPSIPINDIKSEIHIDHDNETYLDMEQDHHKYENYSMFKEDNWLTNENNEELANNEILKCQYCDFKGCFRQIQSHTSVHRKDMICHFCEHCTFQCKQLNELDRHYKEKHRTVRFHCNICNMDYKSIKTFRSHEKQHTISKQCDLCNYKGTTQYRLWIHCQEEHVGYIFKCKLCPFEGKFAKQFHRHNKVHVKLQCQKCDFIASSRSLMRAHKRTHKRYIYKKLAPATSTNNKSKRIKNKKLKQQNRLISRSQIEANKTNTTSTSIQSHGKQIKCDGCNQTFCSHYNLGRHIRDHPDIFKCTHCSYVGHKEKKYKIHLESHDQSVIAQSKPLNTFDCTNCLRIFYRKSSLRNHERLCLKNCNTNNVSNERMFEFDDQGSTSFDLTCKKCTRKFTDNCNYQLHQLYCKGNSNRNTCKKCAREFSKKTNLKLHELYCKGSLHESRKEINNSVDESNLLDESSQDDDDSYEQTNEISSNTLNETNENYFCEICNRIFQTHRKYQFHSNLHSESNNFVCKICNFRFGNEQYLERHKRTHDPSRKYKCTICNIGYLKKDCLEAHMATHPNENTQNREILKSTGSSNMKFSFPAEEEEVIERLFNCKLCDLKVPTRMFKKHLELHEHSFSCTLCSSRFLDIYNLHRHALRSHNEKTIAFACTCGKQHSNEIDLIKHCKLSKINEPSVNEKLEQVQHLKKKSDLKTSVDKSKLNLSPIILLSPLKIQKPQASFKCAMCDSYFDNVSILANHMKASHSTKDHNKFVCWECGYTCNRQLKLHIHAQNHSNFLKCFKCNTHFIYRSSVLSHIRLKVCENNGGSIKNTNNVDLNKNTNNVDLIKNTNNIDLIKNTNNESKKIVENSKKPKLSVLKLKLVNRYKGGKKTVVNLNKIKNHKGSVRCPECSKYFSGGSTLRTHINIVHREPTKPCGLCDLKFPRIDYLQKHQERVHNMIFIKKKVKEVPSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -