Pven017952.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- ZBTB41
- Assembly
- GCA_012654025.1
- Location
- CM022883.1:17526641-17539105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0044 0.41 11.4 6.8 1 23 1114 1137 1114 1137 0.96 2 10 0.025 2.3 9.0 2.8 1 23 1145 1167 1145 1167 0.98 3 10 0.16 15 6.5 1.6 1 23 1173 1195 1173 1195 0.96 4 10 0.0017 0.16 12.7 1.5 1 23 1201 1223 1201 1223 0.98 5 10 0.00018 0.017 15.8 5.2 2 23 1229 1250 1228 1250 0.96 6 10 0.21 19 6.1 1.2 3 23 1264 1285 1262 1285 0.95 7 10 0.0013 0.12 13.1 7.0 1 23 1290 1313 1290 1313 0.95 8 10 0.23 22 6.0 1.0 1 23 1320 1343 1320 1343 0.94 9 10 6.1e-05 0.0057 17.2 5.5 1 23 1354 1376 1354 1376 0.98 10 10 1.9e-05 0.0018 18.8 0.9 2 23 1383 1404 1382 1404 0.97
Sequence Information
- Coding Sequence
- atgctgTTGCAAGTATCTGATGAGTTTACTGAACTGCTGAAAAATTTTCTTGTGAAAtTACAAGAAATGGGATTTCTTGAAGATTTTAATCTTGCATCTAAAAAATCAATCACTAAAGACGATCTCAATTATTTACTGGATCAAATTAAATGTTTGAAAGTAGTGATTctagaaataaaattacctaAGTACAACTTAATTGATGAAAAGAAATCAGAAGAAAAACaagataataaaaaacttaattatttctataatgAAGTATCACCCAGATCTAACAATAGCGTTGAAGATGATAGTCCTTATTTAGAATTACTGTCAAACTCAAACCAAGCAGATGATAGAAAACAGGACAATGAAGATTTTGATATTGATCAAAAACTTActgaaaaattgaagaatacagaAAATTCTGCATTTATTGATGACCTACCCAACATcacaataaatgaaaatcaaattcaagATGAAAATTCTGATAAAATTGGTGACAAATTTAggaatgaaataaatttaaatgaaagtttaaaaacaCCAAATCCATGTTTTGAtgataaaaaattagaatcaaatTATATCGAAGAACCTCCAACACCTTTGCTTTATGATAATATTAGTAAGGATCTTATTGAACAAAATGAAgcatcaaaaaatgaaaaaacaaaacaagttgACTTTATAAGTGAAATTGTAATAAGTAAAGAAAAACACGATTTCTCTGAAAATTCAAGGAACGAAAATGATAATGAACTGAGTGAGAATAGTAAAGGAATTCCATTAAGTTCCTTGGATAATGTAACGAATAcaacagaaaatgaaaatattatagaaaacaATGGAATAGATATTATAACAAATAATagttcaaataataaaacattcaaaaataaaatcgaagAAGAGATcaatgaaaagaaagaagacAATTACACTCAATCATctgaaacaattaaaattgtTAATGAACCAAGAGACGAAAATGTATTCAACAATAAAACCGACTGTGACAAACTTGAAACAACTGAATTCATTTCAGCCCTTTCAGAATCAGAATCAAAACaaatgtttaataaaaatattgatactcATACTGAACAATATGTTAACACTACTGATAAACAgaaagataatttaaaatttttaagtgAAATTACAAATGAAGATACGAgcttcatacaagaaattattgATGATAAAAGATCAAGTAAAAAAGACAGTGGATGGGAAAATAAAGAGAATCTACAAATagaagaaaatcataaaaatcgtGAATACGAGAGCGAAAGTCTAAAAACACCTAAACCTATAATACCCAATGACGAAGTATATTATGACAGTAATGAAGATAGCTGTTCTTTTACATTACTTGAAAcgaattacaaaaataaaacaaatgtcttatattcagaagaaaaacaaaaaaataaaaaggaaaccCTCTATGAGAACACTGATCAGTTCAATAGTTATGATTCAAGCTATCCCAATCGTAAACACAATATACCGATACACATTGAACAGAATAAAATCTATGAACGTGAGACAGAACGCGATATGAACACATTCACAATCCCTTCATTGTCgttttttaattgtgaaaatatttatgaagacGAATGTATACTAAAAAGAAATATCAATGAATCTGACTTACaagttaaaaatgaattttatgatATTAATCAAACAAACAATCGATATTCAGAAAATACAGAGGTAACTCATAATAATAATGGAgacaatacaaatttgtatgaaaataatatggaaatttttgaaaagaacacaAATAATGTATTTAATGAGAATCTTTTTCAAGAGCAAACACATCAAAACTAtgaatacaatacccaaactaTTAACAACTATAATGATACTACTTATTACAATAATACATTTCCTATTAATAATGTTAAAGAGCAAACATATCAATACAATAacatattcaataatgaaaatgatacaaGAAGATCCTACCAACAAGAAGATTATGGTTATCAAACCAATAGTAACTATTACGATTATTTtaatcaacaaaattattcatacGATTATTCAAATCCAACATATACGAGTAAACAATATCAACCATGTTCCTATAGTACGAATATGCCATATAATCAACACATTTGTCAACAACAAGACACAAATGTTAATCATACAAATGACTATAATGAACATTATAACTCTTATAGTAATGTAATAaatgaacataattataatCATTACACTGAGTGTAATTCAAACTACAATAGTACAGATAAAACTATGTCTGAACCTTGCTCATCTAATCGAATATATACTACAACACTTTCCGAATCTACAAAAACTATTTCTAATCATTCCATTTATACCTACAATAATATAAATGGCACTGACAATATACATATAGATCCAAGATATGCTTCCAATCATACAATAAATGAATCTgtatctaataataaaaatagaaatcattctgattgtaatgttgtgatggaTAACAAATCATGTTCACAATCTTATAATGAAATGTCCTACAATAATGAAAGCATGAAACATTATACTCCTTCAATCGAAAACTCAACACTTCTttcatttaattcaaatttaatgaaagatTATACAAATGTAAATACAAATCAAATGTTTACAGATATTAATCAAAAATTTGAGTCAAATTATAATCAATTTGAATCCATACCAAATACATATACAaatgaaaacatttcaaatgatGTATTGTCAAGTGATgattataatagtaaaacaaATCGAAAGAGAACTTATTTACAAGATGATACAAACAAAACCACATCATATGGTACAATGTATAATCTatgtgaaaatattaataaagaaaataatgtgatTCTTAATGAACTGGAAAAAGtcgaagaaaatattgaaactaCAAGTGacaatgtaaataaaacatattccaaaaaatcaaataaacaaattgaaaataacaacGTCGAACATTGTACAGAAAGTCAAGATTTAATAGAAACATTAAAGAACTTTACACAAtctccatttgaaattttatctcGTTCATCTCAAGCAAcaaataaaaggaataaaacCAAACAAGATTTGGCGGCTCATGAGATTGCTAATTTTGAAGATGACAATTCAACTGAACAGTCTCTGACTTATACTCAATTGAAAACACCAGAGAGTATTTTTCCCACTGAACATACAggagatttgaaaaaattattaagTTGTAATTATTATCAAGAAGATTTAGGTGTAAGCCAGATGCAGAAACTGAAGAAATCAAATCGTTTTACTTCAAAGAATTTCAAAGATAAACGAAAAAGACGAAGTCAACCGTCTGAAGAAGGAAAAGTCTACTGTTGTGAATTGTGTGGCCGGACGACTACCAATAAGCATTCTCTCAAATATCATCACGCCACTGTGCACGGGCTCTACGCGGACCAAGCGTATTCTTGTCACGTCTGCAACaaactttatttgaaaaaatccgtCCTGATAAAACATCTTCAAACTCATGAAGGAGTCAAGAATTTTGTGTGTGAATATTGTCCTGCTAAATTTGGACAAAAAGTAGCCTGTCATGTCCACATGCTACAGCACAGAGgtgaatTTAAATATGAATGTGAATATTGCAGTAAAAAGTATCCAACCCGCGCCAAACTCAACTTTCATATAAAGAGTCATAACGAGCCTTCGTGCATCTGTGTGCACTGCAATAAGAAGTTCACAACCAAACAGTACCTTAGGGCGCATGTTCTGACGCATACACCAAAGttaaaacaaaagtttcccATTGCTGTACACTGTGTGGATTGTAATGCTCCTTTCAAATCACTTAAAGCTATGCtaatgcataaaaagaaaagtcaTCCTATAGCAGTGCACGACTGTCAATACTGTCACAGAAGTTTTACTTCACATTCTCTTCTTTTGAGTCATGTTAAACGACTCCACTCTCTCAATCGTCAaaagcaccagtgttcCAATTGCATaaagtcatttttttctgaagCTGTTTTGCGTCAACATGTAGCTTCAAATCATGCATTGAATTCAACAGAGAAAGTCAAACCTTTCGAGTGTGAAATATGTCATAAGAAATACTCTTTTCGGAGTAAATTGAGTACCCACATGAAGAAACATAGccagAAACCCTCCATTCACTGTCCAATTTGTGGCAAACCATTTTATAGGAAAGATGTTATGAAGAACCACCAGTTGACGCACTTGTCGACGCTCGATGGAAGTCATGCTGACTGA
- Protein Sequence
- MLLQVSDEFTELLKNFLVKLQEMGFLEDFNLASKKSITKDDLNYLLDQIKCLKVVILEIKLPKYNLIDEKKSEEKQDNKKLNYFYNEVSPRSNNSVEDDSPYLELLSNSNQADDRKQDNEDFDIDQKLTEKLKNTENSAFIDDLPNITINENQIQDENSDKIGDKFRNEINLNESLKTPNPCFDDKKLESNYIEEPPTPLLYDNISKDLIEQNEASKNEKTKQVDFISEIVISKEKHDFSENSRNENDNELSENSKGIPLSSLDNVTNTTENENIIENNGIDIITNNSSNNKTFKNKIEEEINEKKEDNYTQSSETIKIVNEPRDENVFNNKTDCDKLETTEFISALSESESKQMFNKNIDTHTEQYVNTTDKQKDNLKFLSEITNEDTSFIQEIIDDKRSSKKDSGWENKENLQIEENHKNREYESESLKTPKPIIPNDEVYYDSNEDSCSFTLLETNYKNKTNVLYSEEKQKNKKETLYENTDQFNSYDSSYPNRKHNIPIHIEQNKIYERETERDMNTFTIPSLSFFNCENIYEDECILKRNINESDLQVKNEFYDINQTNNRYSENTEVTHNNNGDNTNLYENNMEIFEKNTNNVFNENLFQEQTHQNYEYNTQTINNYNDTTYYNNTFPINNVKEQTYQYNNIFNNENDTRRSYQQEDYGYQTNSNYYDYFNQQNYSYDYSNPTYTSKQYQPCSYSTNMPYNQHICQQQDTNVNHTNDYNEHYNSYSNVINEHNYNHYTECNSNYNSTDKTMSEPCSSNRIYTTTLSESTKTISNHSIYTYNNINGTDNIHIDPRYASNHTINESVSNNKNRNHSDCNVVMDNKSCSQSYNEMSYNNESMKHYTPSIENSTLLSFNSNLMKDYTNVNTNQMFTDINQKFESNYNQFESIPNTYTNENISNDVLSSDDYNSKTNRKRTYLQDDTNKTTSYGTMYNLCENINKENNVILNELEKVEENIETTSDNVNKTYSKKSNKQIENNNVEHCTESQDLIETLKNFTQSPFEILSRSSQATNKRNKTKQDLAAHEIANFEDDNSTEQSLTYTQLKTPESIFPTEHTGDLKKLLSCNYYQEDLGVSQMQKLKKSNRFTSKNFKDKRKRRSQPSEEGKVYCCELCGRTTTNKHSLKYHHATVHGLYADQAYSCHVCNKLYLKKSVLIKHLQTHEGVKNFVCEYCPAKFGQKVACHVHMLQHRGEFKYECEYCSKKYPTRAKLNFHIKSHNEPSCICVHCNKKFTTKQYLRAHVLTHTPKLKQKFPIAVHCVDCNAPFKSLKAMLMHKKKSHPIAVHDCQYCHRSFTSHSLLLSHVKRLHSLNRQKHQCSNCIKSFFSEAVLRQHVASNHALNSTEKVKPFECEICHKKYSFRSKLSTHMKKHSQKPSIHCPICGKPFYRKDVMKNHQLTHLSTLDGSHAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -