Pven015675.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- RREB1
- Assembly
- GCA_012654025.1
- Location
- CM022885.1:28611055-28618573[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 0.28 11.9 0.6 1 23 60 82 60 82 0.98 2 13 0.019 1.8 9.4 1.4 1 23 96 118 96 118 0.97 3 13 3e-05 0.0028 18.2 4.2 1 23 124 147 124 147 0.97 4 13 1.8 1.6e+02 3.2 0.1 1 23 223 246 223 246 0.84 5 13 0.00042 0.039 14.6 0.8 1 22 319 340 319 340 0.97 6 13 0.078 7.3 7.5 0.1 1 23 467 489 467 489 0.97 7 13 0.0064 0.6 10.9 3.4 1 23 867 890 867 890 0.95 8 13 4.3e-05 0.004 17.7 0.5 3 23 1164 1184 1163 1184 0.98 9 13 0.063 5.9 7.8 6.1 1 23 1190 1213 1190 1213 0.97 10 13 0.67 63 4.5 0.9 1 23 1244 1268 1244 1268 0.85 11 13 4.6 4.3e+02 1.9 0.2 1 23 1312 1335 1312 1335 0.94 12 13 0.0024 0.23 12.2 0.5 3 23 1389 1409 1387 1409 0.96 13 13 0.0069 0.64 10.8 6.0 1 23 1415 1437 1415 1437 0.98
Sequence Information
- Coding Sequence
- ATGACAACTCTGTCCGTGCCATCCGATAGAGGTCTTAGTTTTATGATAAAGACCGAAGATTTAGACAATAATTCATCTGTGGTTGGACACGAAAATAAAAGACTGCAAGCTTTAgctgaaaacaaaaatggtCAATTAGTGATAACTTCAACACACATCAAGAATGAGAACAAAGAATTTCAATGTTTGATCTGTAGACAAGTATTTTATTCGTCACAGGATTTTAGTATTCATGTACTGTCGCACAACAGTGTCGCTGATTCGGTTCCTAATAGTAAATCTAGATTTTCCTGTATGTTTTGCCATAAAATGTTAGGCTCTTCAAACTCATTGGATCGGCATATTTTAATTCACACCGGAGAACGTCCATTTAAGTGCAAGTATTGCAACCTAACTTTTACAACAAACGGAAACATGCACAGACATGAAAGAGTTAACCATAGATCTCAAATTCTGAATTCATCAAACGAAGATTATTGGAGTAACGACAGTAATGGAAGCGTTGATAGTTATGATGATCATGACTATCGTGAATCTCCTGAAAGCAATGACAGAAAGAGGAAATTTTCAGACTCAGagttcaacaacaacaatagctcAAACACAGTCGACAATAATAActtcattaaaaaatacaacgaATTCAACTCCCACCATTTAGGCCATTTTTCCTGCCCCGTTTGTCACAGGGATGAAGTATCCATCCAAGATTTAGAATCACATATCGCAGAAGTTCATCCAGAATACCAAGCTCGTTGCGAACATTGCAATTCGCTATTTCAGAACCACCATTTTTTAAACTTGCATGTATACATGGTTCACCATAGAGATCACTTGCTCAATgtatttaaagaaagaaaactttctATTCCCGATTTGGCGGGTTTGATTCAAGAATCTCGAATTTCTTCAGAGAAAATTGTGACAAATGATTTGAATGGTAAAAGTCATGATTTTAAATGCGAAAAGTGCTTTTCAGAGTTTTCTGATAACTCAGAACTAGAAAGTCATCAAAAGACATGTGCATCTTCTGATGCAGATAGTTCGTCCAATGAAAATTACTCAGCCACTGATCTCAGTAGTGTAAACTCTAAACGTAAACATTCAGAGAGTTCTGCAGAAGAGGAGAGAAAAAGGGAAGAATTCTTCAATGGTTTAGATCTCAAAACTGTACGTCACACCCCAAGTAAAATTGTGACTAACGGCATCGAAAACAAAGATCTTGCAGATATCCAAAGCATTATAACAAATACATCAACCACGCACTTGATAACAGATTTATCCAAATCTCCAGAGCCGAATTCTAATGACGTTTCACCTGTAGATTCTGGATGCGGAGAAGAAGAGCAACAAGACTGTTTTGCCGCtgaatttcgaaaaatgaaATTGAGAGGAGAATTTCCTTGCCGACTCTGTCCATCAATTTTTCCTAATTTGAGAGCACTCAAAGGACATAATCGAGTACATTTGGTTAGTTGTCTGGAAGACCCTACAAATGACATCTCAGAGGAATCCTACTACCCGAAGGACGAGATAAAGAAAACTCTTTTCCCTGACAGTactaatattttaaagaatcGTATTCGTGTAAGCTCTATAATTCCTGAGAAAGTTAAAGTGCCTGTGCCGATAGAATTATCTGAGAGTAAttgtaataatattagaagtatGGATGGTAATAATATTACTCTTCCATGTAATattatttcgaaaaataatacCAATTTTATGAATTCTTCTATGAACTCATCTGACTGGTTGGATGAAAGCATGAAAAGGAAAGCTTTGGATGTAAGCATGAAAACATCAGATgatgaagaagatgaagaaataaAACCTAACGAAATGGAGATTGGTGCTACTGAAGAAACTCCTCTCGACTTGAGTGTCGATGTATTAGATTTGAGTAAGAAAAATCAAGACTTGCCAACGTCTGATACTAATGACGAAGAAGAACCTCAAGATTTATCAAAAAAGTCAGCTGACGTTGTGAACAATTATGATTCTAGTCCTAATCAGTCATTTTTTGTTGCAACTGATTTGAAGATGAAAGATGAACTCATGGATAAGAGTGAGGAACCTTTGACTTCGGACACCTATAGagataaattaatgaaaatatacgaATATGAAAATAGACCTTTGGCACCAACTTTGCCACCCACTTACCATCCATACTTCTTTCCAGCGCCTATTCTGCCCATaggatttcaaccaaatgttAGAAGTAATCAAAATTACCAAAAGGAGATTTTTAGGGGCCTGCAATTAAATACAAGAGGAGTCATTGATCAAATAGCAATGGCAACTGCGGCTGAAAGATTTCAACAGCAAGCTATTGCAATACAACAGCAAGCTATTGCTGATTACAACAAGAGAGTCGAAAATGTAAATACCGAAGGAAACAAGAAGATCAGAGAAAATTCTCCCACACCCATACCAACTATTAACGTAAatactagtaataataatattagtaaCCCTGAAAACACGGCGGGCAAAACACAATCAAATTCATCCTCTTCGGTAAAAATGGTGCTAAAAGATGGTGTTTTACAAGCTAAGCCGAAGCAGAGACGATACCGGACCGAACGTCCTTTCTTTTGTGAACATTGTTCTGGCAGATTTACCCTGCGTTCCAATATGGAGAGGCacataaaacaacaacatccacagTTTTGGATTCAAAAGCAACGAGGTGGTTCTTCTAGTTCAAGACGTGGTAATccatataataaaataatgccatTGGTTTCCGGATTCAATCATGGCATCAATCATCCCAGTTGCTATGAAGAAGCTAGCCATTACGTCAAATCGCTTCctaattttgcaaataataatGGACTAAAGTCAATTTCAGATGAGGTGAAAATCGCTATATCTTTACAGCTAAAAAACAAGGTAATATCTAGCGAAGAAAATGCTAAATATTACGCAGATCTCAAATCATCTGACTCTTCCCCAGACGATGTTAATTACTCTGATGAAAGAATGGATAAACATAATGAAGACAACAGGTCAAGTACAGAGCCAGACTACCAATCTCATGACAATCATGACGACACAGGAAAtgaatattatgatgatgaggATGAGGAAGATGAAGAGCTGGTAATTGACGAAGCTTCTGTTGATAATAATGATATGAGTACTGTGAATGGTGAAACAGAAGAAAATAGAAGTGACACAAAAGAAGGAGCACAATCTATCAAACAGAGAGAAGATAGCGGAGCTCTTGATTTGGCCAGTGTGTCAAGACTTCTAGATAATGCCTCTACTCAAACTTTTCGACAGTTTTTCCACGACGAAGAAGAACACAATCAAGAATTGGCAAGTGAAGAAGACGAAGAAGGATTAGTAGCGGGAAGTGAGGGCATTGGCTCTGGTAGCGATGAAAACAGaTCTGAGTCGGAACAAAATTTAAGAGACACTAATGCCcaaccaaaaaagaaaagtgCTTATTCACTGGCTCCAAATCGAGTATTTTGTCCATACTGTGATAGAAAATTTCCATGGTCGTCTTCATTGCGAAGACACATCTTAACCCACACTGGTCAGAAACCATATAAGTGTAGCCACTGCCCTTTGCTTTTTACAACCAAATCAAACTGTGATAGACACCTGTTACGTAAACATGGTGGACAAGTACCACCTCCATCTGAAGTCAATCCATCCGAAAATTCAGATAATCAATCTTTTACAATGAGAAATGTTCCGGAACGTCCATACAAATGTATTTACTGTCCGAGCTCCACATTTGCCTCATTGCAAAATCTAAATAAACACCTTTCAAGCAAACACTCAGAGGAAAAAAAGTCAGATGATGCAAACAGTGGATATGAAGAGAGCCAAGGTAGTGGAAGCGAAGACATTGAAATGACAGAAAAGAAATGTCTTCCTATTGATTTTCACACATCTCCCGATTTACCCTTTAAGTGCTACTTGTGCGAGGGCAGCTATGCGGAGAGACAAGAAGCATTAGACCATATCAAGAATTCGCACGCTTCTGAATTTCAATTACTCATATCGAAAGGAGCTCTTGATATGAGCGCAACTTCAGTTCCAGAGGAGCCTCCTCAAAATGACGATATGAATAATTCTGAGGAAAATTTAGATCAAATTAAAGGAAAATTCCCTGACTACGCTAATAGAAAGGTAATGTGTGCATTTTGTTTACGACGATTCTGGTCAGCTGAAGATTTGAGGAGACACATGAGAACTCATACTGGGGAAAGACCATTCTCCTGTGATATTTGTAGAAGAAAATTTACCTTAAAACACAGTATGCTAAGACACCGTAAAAAGCACAACAAGGTGTGTAATTCGGAAGAGATTTTCAACAGCGATGATGAGACGCCCAATTCAAACAATTATAATATGAGCAATAACAATTCTATTATTAATATTCCAGTTAGCTTTTGGGCAAAAAGGGAACAAGAAGGAAATGATTTGATCAGTAATTTGTTAGGTATACATGACAAAACtattattgacaaaatgttacTTTCCAAATCCGCTGAAGACGCAGCTAGATTACTTGgagttcaaaaataa
- Protein Sequence
- MTTLSVPSDRGLSFMIKTEDLDNNSSVVGHENKRLQALAENKNGQLVITSTHIKNENKEFQCLICRQVFYSSQDFSIHVLSHNSVADSVPNSKSRFSCMFCHKMLGSSNSLDRHILIHTGERPFKCKYCNLTFTTNGNMHRHERVNHRSQILNSSNEDYWSNDSNGSVDSYDDHDYRESPESNDRKRKFSDSEFNNNNSSNTVDNNNFIKKYNEFNSHHLGHFSCPVCHRDEVSIQDLESHIAEVHPEYQARCEHCNSLFQNHHFLNLHVYMVHHRDHLLNVFKERKLSIPDLAGLIQESRISSEKIVTNDLNGKSHDFKCEKCFSEFSDNSELESHQKTCASSDADSSSNENYSATDLSSVNSKRKHSESSAEEERKREEFFNGLDLKTVRHTPSKIVTNGIENKDLADIQSIITNTSTTHLITDLSKSPEPNSNDVSPVDSGCGEEEQQDCFAAEFRKMKLRGEFPCRLCPSIFPNLRALKGHNRVHLVSCLEDPTNDISEESYYPKDEIKKTLFPDSTNILKNRIRVSSIIPEKVKVPVPIELSESNCNNIRSMDGNNITLPCNIISKNNTNFMNSSMNSSDWLDESMKRKALDVSMKTSDDEEDEEIKPNEMEIGATEETPLDLSVDVLDLSKKNQDLPTSDTNDEEEPQDLSKKSADVVNNYDSSPNQSFFVATDLKMKDELMDKSEEPLTSDTYRDKLMKIYEYENRPLAPTLPPTYHPYFFPAPILPIGFQPNVRSNQNYQKEIFRGLQLNTRGVIDQIAMATAAERFQQQAIAIQQQAIADYNKRVENVNTEGNKKIRENSPTPIPTINVNTSNNNISNPENTAGKTQSNSSSSVKMVLKDGVLQAKPKQRRYRTERPFFCEHCSGRFTLRSNMERHIKQQHPQFWIQKQRGGSSSSRRGNPYNKIMPLVSGFNHGINHPSCYEEASHYVKSLPNFANNNGLKSISDEVKIAISLQLKNKVISSEENAKYYADLKSSDSSPDDVNYSDERMDKHNEDNRSSTEPDYQSHDNHDDTGNEYYDDEDEEDEELVIDEASVDNNDMSTVNGETEENRSDTKEGAQSIKQREDSGALDLASVSRLLDNASTQTFRQFFHDEEEHNQELASEEDEEGLVAGSEGIGSGSDENRSESEQNLRDTNAQPKKKSAYSLAPNRVFCPYCDRKFPWSSSLRRHILTHTGQKPYKCSHCPLLFTTKSNCDRHLLRKHGGQVPPPSEVNPSENSDNQSFTMRNVPERPYKCIYCPSSTFASLQNLNKHLSSKHSEEKKSDDANSGYEESQGSGSEDIEMTEKKCLPIDFHTSPDLPFKCYLCEGSYAERQEALDHIKNSHASEFQLLISKGALDMSATSVPEEPPQNDDMNNSEENLDQIKGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRKFTLKHSMLRHRKKHNKVCNSEEIFNSDDETPNSNNYNMSNNNSIINIPVSFWAKREQEGNDLISNLLGIHDKTIIDKMLLSKSAEDAARLLGVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -