Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022876.1:24672474-24678341[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0057 0.53 11.0 0.6 1 23 212 235 212 235 0.98

2 10 0.021 2 9.2 3.5 3 23 244 265 242 265 0.92

3 10 9.8e-08 9.2e-06 26.0 0.8 1 23 301 324 301 324 0.95

4 10 0.00011 0.01 16.4 4.5 1 23 333 355 333 355 0.99

5 10 6.4e-05 0.0059 17.2 0.6 1 21 361 381 361 382 0.95

6 10 9.7 9.1e+02 0.9 6.2 1 21 660 680 660 683 0.94

7 10 0.058 5.4 7.9 5.5 3 23 692 712 690 712 0.95

8 10 4.3e-07 4e-05 24.0 0.9 2 23 747 769 746 769 0.94

9 10 5.3e-06 0.00049 20.6 4.2 1 23 778 800 778 800 0.99

10 10 0.53 50 4.8 0.3 5 21 809 825 806 826 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0057	0.53	11.0	0.6	1	23	212	235	212	235	0.98
2	10	0.021	2	9.2	3.5	3	23	244	265	242	265	0.92
3	10	9.8e-08	9.2e-06	26.0	0.8	1	23	301	324	301	324	0.95
4	10	0.00011	0.01	16.4	4.5	1	23	333	355	333	355	0.99
5	10	6.4e-05	0.0059	17.2	0.6	1	21	361	381	361	382	0.95
6	10	9.7	9.1e+02	0.9	6.2	1	21	660	680	660	683	0.94
7	10	0.058	5.4	7.9	5.5	3	23	692	712	690	712	0.95
8	10	4.3e-07	4e-05	24.0	0.9	2	23	747	769	746	769	0.94
9	10	5.3e-06	0.00049	20.6	4.2	1	23	778	800	778	800	0.99
10	10	0.53	50	4.8	0.3	5	21	809	825	806	826	0.91

Sequence Information

Coding Sequence: ATGCAAAGTGGAGATGTAGTTGATATTGAACAACATGATCCAGCCGCTGCAGTCATAACAATTGGTGGACCGgaaaatatcaaaacagaagatgaagaagatgaCAAAGCTGAACGAGAAACAAGAAACGcaacaaataatttagaaatagaaattaaaattgaaaatgattccAATGATGACCTATGGGAAACAAATAAAGAggaattcaaaacaaataaacaagaacgaaacagaagaaaaagaatCCACGATAAATTGAACAGTGATGAATCTGATATGGAAGATGACAATAATGGAAGCGAaggagagaaaaatataaacgaaTATAATGTAAAAACCATATTGAACTATCAAAAAGAAATGCTTGGATTAATCAATAAAGACAAtggaaataaaacaagaaacaaaaagaaaaaacagaacATGAATAGTCAAAAAAGAATCAATGTAGAAACTAGAAGACGTGAAGAGAAaacgaagaagaaaattaaaagaaaaacaatcgATTTGAATAGAACTCCATCTGATATGGACAATATATTTGGGAGTCTTGATGAATTAAGTTCAGATGAGAACTCTGACAATGATACTGATGCTCTAGAACTTCATGtgggaaaagaaaaaacagattTCCAATGTAAAAATTGTTCTTTGATTTTACCAACCTATGAGAAATTATTACGTCACTTGAAATCCGACCATGGAAATTATGAAACATCTTGTCTATGTACATTCTGTGgattttattcattcaataaatcAACATTGAAAAATCATATTCGATTAGAGCAtattatagaaattaaaaagCATCGTTCGAAACAAATCTGTGACATATGCTCTGCTGAAGTTGTACATTTAGCTATACATAAGAAGCATTCACATAGTGGAACGTTTTTCATCTGTCCACATTGCGGTAAAAAGTTTACACGTAAAGGTGAACTCCAATTACATATTAAGGGGATTCATTTGAAGCATGAGTTAGAGAAAACGTATACATGTGAATTTTGTCGGAAacaatttactttttataattatttaaaacgaCATTTACGTGTTCATACGAATGAAAGACCGTATAAATGTGAAACGTGTGGTGCTGCTTTTAATCATAATGTATCGTTGAAAAATCATAGGAACTCTTGTAAAAAACGTGAACAAATGACAACGTCAACGTCGCTTgatgaaacaaaaaagaataCGTCATCATCAACGACGAGAGAGATATCGACGAATTTAAATTTAtcgaaaacaatgaaaattgatCGAAAACAAAAATCGTCAACAATGATGgATTCAATTgatattaaagaagaagaattagatTGGGAAGATAATACAGTTGATGAGTATCAAGAATTCGTGAGTTCATCATCGaaacataaaaaagaaataaaccaTAAATCCAAACGAAAATCAAAGAAAAGTTCAAACAATTGTGGAAAAGATTTTGAGAGTATTCTCAAAAAGACCAAGAGAAATAAAAGtttgtcgaaaaaaaattgttttcaaaatgaagaATCTGATGACGATTGTAAAGATAATATAAGTGAACAGTCGGAGAGTAATAAtcaagaagaaggagaagatgTCTTTGTAGATAGCAGTTGGGATGATAGTTCGGGATTATCGTCCAGTGATTGGGATGCTACAGATAATGAAGGCTATGAAAACAAAACGAATGAAAtgagaaaacaaaatgaaatcagTGACTACGAAGAAGTAGAAGGAGAAGACGATGAATATGAATATGAAGAAGACGacgagtatataaaaataaaagatgaaatTAAGAAAGAAGAAATTGATAATATACCTTTAGATTGTATAGATGTTATGCTTAATGAAGAAGAAGTAGAAGCAGGAAGAGATGGAACTCATCAAAACCATAATACGAATAGGAAACGAAGAAGAAAACGACACCATTATATGAAATTGAACAACAAATCAATACGAatatatagaaaagaaaaatacgaaTGTAAACACTGCTCGAATGTGACGTACTCATTCGAATCCTATCTGAAACATttaaaatgtaaacataatGGCTATCAAATCTCTcatctttgttatttttgtggCTATTATTCAACAAAGAAGTCAACATTAACACATCATATTAAAGAACACATTGAAcctaaaaagaaacaaaagaaaatttgtgaaatcTGTTGTGCTGAAGTGTACCATATACAAGGCCATATTAAAGATAAACATTCTGGATTCTTTTTGACCTGTCCACATTGTCCGAAAACATTTCCTCGTAAAACTGAATTAAGAAATCATATTAAAGGAATACATTTAAAACATCAACTGGAAAAGACTTATACGTGTGAATATTGCAGTAAAGAGTTTACGTTTTACAATTATTTGAAGCGACATTTGAGAACGCATACAAATGAGAAACCTTATAAATGTATTTGTGGCGTTGGATTTAATTTTAACGTTTCCTTGAAGAATCATAAATTGAAATGTTCGATGGTTTTAATGAGTCAGGCCGGAGTTGGTGGAAATATTTCTTGA
Protein Sequence: MQSGDVVDIEQHDPAAAVITIGGPENIKTEDEEDDKAERETRNATNNLEIEIKIENDSNDDLWETNKEEFKTNKQERNRRKRIHDKLNSDESDMEDDNNGSEGEKNINEYNVKTILNYQKEMLGLINKDNGNKTRNKKKKQNMNSQKRINVETRRREEKTKKKIKRKTIDLNRTPSDMDNIFGSLDELSSDENSDNDTDALELHVGKEKTDFQCKNCSLILPTYEKLLRHLKSDHGNYETSCLCTFCGFYSFNKSTLKNHIRLEHIIEIKKHRSKQICDICSAEVVHLAIHKKHSHSGTFFICPHCGKKFTRKGELQLHIKGIHLKHELEKTYTCEFCRKQFTFYNYLKRHLRVHTNERPYKCETCGAAFNHNVSLKNHRNSCKKREQMTTSTSLDETKKNTSSSTTREISTNLNLSKTMKIDRKQKSSTMMDSIDIKEEELDWEDNTVDEYQEFVSSSSKHKKEINHKSKRKSKKSSNNCGKDFESILKKTKRNKSLSKKNCFQNEESDDDCKDNISEQSESNNQEEGEDVFVDSSWDDSSGLSSSDWDATDNEGYENKTNEMRKQNEISDYEEVEGEDDEYEYEEDDEYIKIKDEIKKEEIDNIPLDCIDVMLNEEEVEAGRDGTHQNHNTNRKRRRKRHHYMKLNNKSIRIYRKEKYECKHCSNVTYSFESYLKHLKCKHNGYQISHLCYFCGYYSTKKSTLTHHIKEHIEPKKKQKKICEICCAEVYHIQGHIKDKHSGFFLTCPHCPKTFPRKTELRNHIKGIHLKHQLEKTYTCEYCSKEFTFYNYLKRHLRTHTNEKPYKCICGVGFNFNVSLKNHKLKCSMVLMSQAGVGGNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -