Pven004589.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022878.1:2156516-2160020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.4 4.1e+02 1.9 2.9 2 23 39 62 38 62 0.86 2 15 1.2 1.1e+02 3.7 0.2 3 23 112 133 110 133 0.95 3 15 0.00024 0.023 15.3 1.5 1 23 307 330 307 330 0.96 4 15 1.8e-05 0.0017 18.9 2.8 1 23 335 358 335 358 0.97 5 15 0.00045 0.042 14.5 1.7 1 23 385 408 385 408 0.96 6 15 5.8 5.4e+02 1.6 0.1 1 23 414 437 414 437 0.89 7 15 2.6e-05 0.0024 18.4 0.3 1 23 477 499 477 499 0.98 8 15 0.0077 0.72 10.6 3.1 1 23 505 528 505 529 0.96 9 15 0.0025 0.24 12.1 0.6 1 23 553 575 553 575 0.98 10 15 0.00036 0.034 14.8 1.2 1 23 581 604 581 604 0.95 11 15 0.0019 0.18 12.5 1.5 1 23 609 631 609 631 0.97 12 15 6.8e-05 0.0064 17.1 3.3 1 23 637 659 637 659 0.98 13 15 5.9e-05 0.0055 17.3 1.6 1 23 665 687 665 687 0.98 14 15 0.0012 0.12 13.1 3.7 1 23 694 716 694 716 0.97 15 15 0.0072 0.67 10.7 2.6 1 23 722 744 722 744 0.97
Sequence Information
- Coding Sequence
- ATGACATTGGAAAATAATGCACTGGCTTTTAAATTTAACAGATATAAATGGGCCCCAGAAATTCATATTAAAATAGATCATGGTCTCATAGTGTACGGACAAGATGAGTGGTATGCTTGTAAGACGTGTTGTAATAAATTGTATAGTAGACGTCGGGATATTGTTCGTCATAGACTGAATATGCACAATGAAACCCTCATTGAACCAGATGAATATCTGATTCGGTCGTTGAGCGATATCTTTCTACCGTGCGAAGTTTGTGGTGAGaaaaatttcttctccaaatttTGTAAGGCACATAGTTTACTTGGTGAAGATGTCAAATCATTTGGTTGTAAATTCTGTGAGGAAAACTATATGGACAAACGAATTTTACAAGCCCATGTTAATATTGAACATGGCAGGGATGTACACGATGATCCGGACTTTCAATGTTATATGTGTAAACTATGTTGCGATCAGTTGTATTTAGGAcgtgaacattttcaatgtcatCTTCGGGATGTTCATGGAGAAACGAATTCAGTGTGTGATAATTATGCGATCTCGTCACTCGATGAAATACTTCTCGCCTGTAAACTTTGTAGAGCTCCGTGTTTGTTCTCAGGTTTTTGCAGAGAACATGATGCGAATGTGGATATTGATAATTGTACGGATCATCCGGAACAACATGCTTGTCGGTTCTGTTCGTCTAGTCATACTGATTGTAATAATCTATGGATACATTTGTTTTCTCAACATTTTGATGAGGTTCTCAATTGTAATCTGTGCGATAGTAACTCCAAGGAGAATATTATCAGGGCGCCAATCATGTTGATGAATCATTGGAGATCTGTTCATAGAAGTTCTAGACTAGATTTGTTGTCTGCAGATGAACTTCGAGAAAAGTCTGAAGTCGACATTGATGGTGAAACAAAGTATCAGTGTCCAGATTGTAAGAAGATCTTGAAGAATTTCTATCTGATGAAGAAACACGTTCGGGACACTCATGGTGGGGAAACGTTTTCGTGTGATGTTTGctcaaaatcattttcaatgaaaagaTCGTTACGAGAACATTATCGAAAAACACATCCTATTCGTATTAAAGCAAATCGTGAAGAGAACGatcttaaaaagaaaacgatGGTATTTGTCGATGGTGTCGTTCGACACAAATGTCCTGACTGTGGTTTTTGTGTGAAAAGATTTCAAGGCCTTCGAGAACATATTGCTTCTGTTCATGCTGATGTGAAAGAATTCGTGTGTATTGTTTGTGGCGCTGGGTTTGGCTTAGCGAGACGTCTAAAAGTTCACTATGTACGAAGACATACGGTGAATATTTTAGCGGCACCTAATACACAAGGCGTTGACGAACAACCTGATGTGCTCagtatatttaatgtaaataaagaagacTGTCAAATTATGCAAGGCGACAAAGTTAAATTCAAATGTCCAGAATGTGTCCGATCCTATGGCAACTTTTCCGAACTGAAAAAACATTTGGCTGTTCATACGGGACAGAAACATTTCGTTTGTACGGTCTGTAACAAAGGATTCTTTATGAGAAATAGATTGAATGAACATTACAAGAGAGTGCACCATTTGAATTTTGCCCCCAAAGATCTTGATTTAAGGCGAGAAACCGAAATTCGAGTTGATGGTATGCGTAAGTTCAAGTGTCCTTCTTGTCCATCAAGTTTTCAAAGGTTCAATGCAATGCAGGAACATATGTTGTCACATACAGGCGAGAAACCTTACTTGTGTGATATATGTGGAAAAGAATTTCCACTCAAAAGACGTTTGAATGCGCATCATAAAAAATGGCATCTGGGAAAAAGGTTTCGTTGTCATATTTGTGGCAGTACGATGAGTAATCCCACCAATTATAGAGATCATTTGGATAGTCATAAGGGAGAGAAAAAGTACACGTGTGAACAGTGTGGCACTGGGTTTGCTTATAAATCATCTCTCTATCATCATAGATTTACTCATAACAAAGATCGAACGTACATATGCACGTATTGTAATCGAAAATATCAAAGTCCGAAAACATTGAAAGAACATTTAAAAGTACATACGAACGGAGATGTGCGACACATTTGTGAAACATGTGGCAGCGAGTTTCATTCGCGCAAAAATCTCCTTACACATGTTCGAACGCATAATGCCGATCGGAATCATGTGTGCGAGCTTTgtaatatcaatttaaaaacgAGACGAAGTCTTCTGAAACATTATACAACACATGGGACACAATTGGCGGCCATTgctttcaataatattaatccGATCAATCAAGCCCCGTTGCCGTCTCNCATTTATAAGTGGGAGGGACACTTTCAGCTACCGTTCCTCGGAtttcaatga
- Protein Sequence
- MTLENNALAFKFNRYKWAPEIHIKIDHGLIVYGQDEWYACKTCCNKLYSRRRDIVRHRLNMHNETLIEPDEYLIRSLSDIFLPCEVCGEKNFFSKFCKAHSLLGEDVKSFGCKFCEENYMDKRILQAHVNIEHGRDVHDDPDFQCYMCKLCCDQLYLGREHFQCHLRDVHGETNSVCDNYAISSLDEILLACKLCRAPCLFSGFCREHDANVDIDNCTDHPEQHACRFCSSSHTDCNNLWIHLFSQHFDEVLNCNLCDSNSKENIIRAPIMLMNHWRSVHRSSRLDLLSADELREKSEVDIDGETKYQCPDCKKILKNFYLMKKHVRDTHGGETFSCDVCSKSFSMKRSLREHYRKTHPIRIKANREENDLKKKTMVFVDGVVRHKCPDCGFCVKRFQGLREHIASVHADVKEFVCIVCGAGFGLARRLKVHYVRRHTVNILAAPNTQGVDEQPDVLSIFNVNKEDCQIMQGDKVKFKCPECVRSYGNFSELKKHLAVHTGQKHFVCTVCNKGFFMRNRLNEHYKRVHHLNFAPKDLDLRRETEIRVDGMRKFKCPSCPSSFQRFNAMQEHMLSHTGEKPYLCDICGKEFPLKRRLNAHHKKWHLGKRFRCHICGSTMSNPTNYRDHLDSHKGEKKYTCEQCGTGFAYKSSLYHHRFTHNKDRTYICTYCNRKYQSPKTLKEHLKVHTNGDVRHICETCGSEFHSRKNLLTHVRTHNADRNHVCELCNINLKTRRSLLKHYTTHGTQLAAIAFNNINPINQAPLPSXIYKWEGHFQLPFLGFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -