Pven010311.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022877.1:31857629-31859497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.9e-05 0.0093 16.6 2.5 1 23 253 276 253 276 0.96 2 11 0.097 9.1 7.2 1.2 3 23 308 328 306 328 0.94 3 11 1.2e-05 0.0011 19.5 1.1 1 23 333 356 333 356 0.97 4 11 0.0021 0.19 12.4 0.3 1 23 361 384 361 384 0.96 5 11 3.8e-06 0.00036 21.0 1.3 1 23 395 417 395 417 0.98 6 11 0.24 23 5.9 6.7 3 23 437 458 436 458 0.96 7 11 0.0045 0.42 11.4 0.6 1 20 474 493 474 494 0.95 8 11 3.9e-05 0.0036 17.9 1.2 2 23 504 525 503 525 0.97 9 11 1.7 1.6e+02 3.3 1.8 1 23 530 553 530 553 0.90 10 11 0.027 2.5 8.9 2.8 2 23 561 583 561 583 0.93 11 11 0.0017 0.16 12.7 0.3 1 23 588 611 588 612 0.96
Sequence Information
- Coding Sequence
- ATGGAAATTGATTTGGATACTATACGTGAGCTAgacaattatttttgtaaaaccaATGATAATAATGCAATGTGTATTGAGAATGCCAGTACCCACTCGACAAATGTATTCGTGGAACAAAAAACTGACTTAAAAAATGGATACATCTCGGAAAACTTATTGACAACGAGCTTTGTGGATGACAATAACAAATACCATTGTAATAGTTGTAAAATATTCCTAGATACAGATTTATGTTTGAAAAATCATATCCGAGATAAACATTCAGATGAATTTGAAGCGGAGAAAAATGAAACCAAAGAATATTTGGAAAACCAAGAGGAAATACGTTTTCCGATTAAATTGGAAGTAGATGAAAGTATTAGTAATTATAATTCAGAAAGTCAACAAGAATTTATCTTCACAGGTAAATTTGATGTAGACGAAAACGTAACAAATTGTGATATTGAAGAGTGTTCGAAAAATCAAGAAGAACATTCTTTTTTAGATGAATTAGGAGAAAACAATATAAATTGTaatataaaagaagaatattCAGAAAATATAATTGTAGATAAATATGTTGATTCGGAATATGTTGGAAGTACAAGTCCTAAAATTGAGGGGGAAAATCCAGAAAATTTGATTGTAGATAAAGATTTTTATTCAGAATATGTTGAAGGTTTAAACGCTAAAGTGAGTGCGAGACGCGCAGAGAAGAAACACCAAAGGAATAATTTAATACAATATATTGATGCACAACATTCAGAACCTCAATTTGAATGTGATCTATGTGAGCATAGGTTTAGCCAGAAACGTTCTTTAAGAATGCATATTATTTCAAAACATTTGACAACGAAGAAGAACACCTGTCAAGGAAATTTTaaacgagaaaaaatatctaaaaattatagaaaatatgcgagaagaaaattacttttttgtcagtattgtaataaaaaattattctcaGAGATATCTTTGAAATTACATGAAGATAAACACAGAGGTGTTACGTATGCATGTGATCAATGTAGCAAATCTTTCACTGATATAACAAGTTTATATCGACACCGAAAAACTGCACATTATGGATTTGtttataaatgtaaaatttgtggATTAAAGTTAGCGGATGATCGCACACTTTTGagacatgaaaaaaatgttcataataAATTAGGCATTGATGATACGATAAGATTTCAATGTCATCTATGCGATGCTTCATATATTAGAAAAGATAGTTTAAGAGTGCACATTAAACTTCATTATATGTCTAAAAATGACGTAGAAAAGTGGTCAAAAAATCGATCTCAGCCATCTTTTTGTGAAGAATGTAAAcactttttagaaaataaaagttgtttgaagcaacatcaaaaatattttcatatgaaaattgtaaaaggcgaagatgaagaagaaatgaaaaatgaccATAAATGTTTCATATGTAATGAAATGTTGTCtagtaaatttgatttgattaatCATTTGAGTTGTAAACATGAGAACATGGTAAAATGGCAATGTGAATTTTGTGATCAAATCTATAAATCAAGAGTTCAACTCAAAAAACATAGGCTAACACATAAAGTAGTTcagtataattgtattttttgtgaaaacaCATTCTTTGAAAAAGAGTTATTGAATTTACATATTCATAGTTCTCACTCGGAAGAAATCAAAAAGAATGAATGTtggaaatgtaaaattaaatttaaatccaAATTGTGTTTGGATAAACATATGTCGGGCGAACATTGTCCGAATCAGTTCATTTGTTTAGATTGTAATGTTACATATGAAAGTTTAGATGAGATGCAATGGCATGTGAAGACATGGCATCATTTACTTGAACAATCTGACCAAGAAGAATCATGA
- Protein Sequence
- MEIDLDTIRELDNYFCKTNDNNAMCIENASTHSTNVFVEQKTDLKNGYISENLLTTSFVDDNNKYHCNSCKIFLDTDLCLKNHIRDKHSDEFEAEKNETKEYLENQEEIRFPIKLEVDESISNYNSESQQEFIFTGKFDVDENVTNCDIEECSKNQEEHSFLDELGENNINCNIKEEYSENIIVDKYVDSEYVGSTSPKIEGENPENLIVDKDFYSEYVEGLNAKVSARRAEKKHQRNNLIQYIDAQHSEPQFECDLCEHRFSQKRSLRMHIISKHLTTKKNTCQGNFKREKISKNYRKYARRKLLFCQYCNKKLFSEISLKLHEDKHRGVTYACDQCSKSFTDITSLYRHRKTAHYGFVYKCKICGLKLADDRTLLRHEKNVHNKLGIDDTIRFQCHLCDASYIRKDSLRVHIKLHYMSKNDVEKWSKNRSQPSFCEECKHFLENKSCLKQHQKYFHMKIVKGEDEEEMKNDHKCFICNEMLSSKFDLINHLSCKHENMVKWQCEFCDQIYKSRVQLKKHRLTHKVVQYNCIFCENTFFEKELLNLHIHSSHSEEIKKNECWKCKIKFKSKLCLDKHMSGEHCPNQFICLDCNVTYESLDEMQWHVKTWHHLLEQSDQEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -