Pven004588.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022878.1:2148638-2150023[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9 2.8e+02 2.5 0.3 12 23 6 18 4 18 0.85 2 13 6.4e-06 0.0006 20.3 0.3 1 23 70 93 70 93 0.97 3 13 0.07 6.5 7.6 2.8 1 23 107 130 107 130 0.96 4 13 4.3 4e+02 2.0 0.2 1 8 151 158 151 160 0.88 5 13 0.00074 0.069 13.8 1.6 1 23 200 223 200 223 0.96 6 13 0.057 5.4 7.9 2.6 1 23 228 254 228 254 0.94 7 13 1.9 1.8e+02 3.1 0.5 1 23 279 302 279 302 0.88 8 13 0.00024 0.022 15.4 0.9 1 23 307 330 307 330 0.96 9 13 0.004 0.38 11.5 2.1 2 23 337 357 336 357 0.97 10 13 1.1e-06 0.0001 22.7 1.0 1 23 363 385 363 385 0.96 11 13 2e-05 0.0019 18.8 0.7 1 23 390 412 390 412 0.97 12 13 6.9e-05 0.0064 17.1 0.1 1 23 418 440 418 440 0.97 13 13 1.5 1.4e+02 3.4 0.8 1 11 446 456 446 461 0.87
Sequence Information
- Coding Sequence
- ATGCATTTTAGNTCTTCCCTTGCATATCTTTCTAGTCACATGCGACGAGAACACAAATCTGAGTCGTGTTCAACGATAACGAATGACGTTTTGTGCATCCTCTGCTCTCATCAGATAACTTCCCACATGTCAAATAACTTTGACGACAGTGGCATTTCAAAGAACGACATTGTTCGACTCGTCGATGATGTCGGTGACTTTCCTCGATTTGTGTGTTCCTATTGTAATGCTGTCTACGCGGACAAACATTCGCTTACCGCTCATATTAACATTCTTCATGGACACATCGTCTATTTGAATTCTTCTTCCCTTGTATGGTACGCGTGTTGTGATTGTCGCAAGTTGTACTTTCGCAAACAAGACATTGTCAAACATATGGCCAGTTTTCATCCGAAAAATAGGACGGCAAACATTGATAGTTTTATTGTTCGAACTCTGAAAGACGTTACATTCCCATGTGACGAGTGTGGTCAGATTGTTCTCTTGTCTCGAAAATGTTCGGTCCATTCACCGAAGTTAAACGAAACTAGAAAAGCAACTTACAAAAGGCGTCAAGTCGACACGTGCCAAGAACATGCCAAAATTCTTGAAGACTGTCACGAGTGTTCGATTTGCGATGAACCGTTCGACAATTGTAATTTCCTTTGGATTCATATATTTACGAATCACAAACAAGAATTGTACAAATGTAATTTGTGCACGAGCTCAACGCGACAACTCAAAGGTTCAGAATTACTACGAAAACATATGCGACGCGTTCACAAAATTGTTGTCGACTCTGCAAATCCAACGCTTCGAGAACAGAGTAGTGTTCTCATCGATGGCGTTCTTCACTACAAATGCGATCTTTGTACGGACATTTTTTGGTCGTATGCCAAACTGAACAGTCATGTTTTACAATTTCACAAATCGGACCATCACGAGTGTCGTCAATGTGAACGCGTCTATCCAACGAAAGCTAAACTCAATGTGCACGTCAAACGTGTACACAATTCAAGTCGAAATGTTCAATGTTCACATTGTGgaggatattttgaaaagtcgAATTTCAAACGACACTTGTCGATTCATACGGGAGAGAAAAAGTACGTGTGCGAAATGTGTGGCAAGAGTTTTAACCAATGGTCAAGTCTGTATATGCACAAGTTTTCACACTCGAGTACGAAATACGAGTGCTCGATTTGTTCGAAACTTTTTAATACGCCTAaaaatttgaacatacattTTAAAGCACATTTGGATACGAACATTTATGCGTGTGAGACGTGTGGAAAGAAGTTTGCATCTCGAGCCGTTTGGAAGGGTCATATGAAAATTCATAGTACGGCTCGGCCGTTTGTTTGTTCACTTTGTAATGTGAGTTTTGTGTTTAACTTGTGCTTGTAA
- Protein Sequence
- MHFXSSLAYLSSHMRREHKSESCSTITNDVLCILCSHQITSHMSNNFDDSGISKNDIVRLVDDVGDFPRFVCSYCNAVYADKHSLTAHINILHGHIVYLNSSSLVWYACCDCRKLYFRKQDIVKHMASFHPKNRTANIDSFIVRTLKDVTFPCDECGQIVLLSRKCSVHSPKLNETRKATYKRRQVDTCQEHAKILEDCHECSICDEPFDNCNFLWIHIFTNHKQELYKCNLCTSSTRQLKGSELLRKHMRRVHKIVVDSANPTLREQSSVLIDGVLHYKCDLCTDIFWSYAKLNSHVLQFHKSDHHECRQCERVYPTKAKLNVHVKRVHNSSRNVQCSHCGGYFEKSNFKRHLSIHTGEKKYVCEMCGKSFNQWSSLYMHKFSHSSTKYECSICSKLFNTPKNLNIHFKAHLDTNIYACETCGKKFASRAVWKGHMKIHSTARPFVCSLCNVSFVFNLCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -