Pven018627.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- PRDM10
- Assembly
- GCA_012654025.1
- Location
- CM022875.1:8195766-8213534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.051 4.7 8.0 0.7 2 23 81 102 81 102 0.95 2 13 6.8e-05 0.0064 17.1 0.5 1 23 176 198 176 198 0.98 3 13 0.0036 0.33 11.7 0.6 1 23 204 227 204 227 0.95 4 13 0.0028 0.26 12.0 1.9 1 23 246 268 246 268 0.98 5 13 0.068 6.4 7.6 2.5 1 23 289 312 289 312 0.90 6 13 7.4e-05 0.0069 17.0 0.1 1 19 319 337 319 340 0.95 7 13 0.81 76 4.3 0.4 1 23 348 370 348 370 0.96 8 13 0.092 8.6 7.2 2.5 1 23 375 397 375 397 0.84 9 13 0.0011 0.1 13.3 3.4 1 23 403 426 403 426 0.97 10 13 0.00028 0.027 15.1 0.6 1 23 431 453 431 453 0.97 11 13 6.6e-06 0.00061 20.3 1.5 1 23 459 482 459 482 0.94 12 13 1.3 1.2e+02 3.6 0.2 1 16 543 558 543 560 0.92 13 13 0.0029 0.27 12.0 3.4 3 23 615 636 615 636 0.98
Sequence Information
- Coding Sequence
- ATGTCACCAGAAACATCAAATTGGATGAGGTTCGTACGTCCTGCACGAACGATAGACGAACAGAATCTGGTTTTACATCAAAAAGGAGAGTCCATTTATTTCACGACAGTAAAAGATATTTGTCTGAAAGAAGAGCTGAGGGTATGGTATTCGCGAGATTATGCTATCAAAAGGCATCTTCCTCTACTGGAAACAAAACACGCTTCATATTTTTCTGACATCCTGGTTGATAGAACTGAAAAGTGTCCACACTGTGATAATTATTTTACCAAAGAAGAGCTGAGGCCTCATATCATAACTGTACATAATGCACCATGTCAAACGACTGAAGCCAAACTATTGAAACAAGATGACCCGGATGAGTTTGATAGTATAGATTTTTGTCAGAAGAAAGTACGCATTTCTGAAAGGATTGCATCTCAGAAGCAAGCACCACCTGTTAGTGAAGACATTGTCACTCTTCCTCCAACTCAgtcaaatgaacaaattaaatCTAGTCAAGTAGTCAGTAGCAAAAGACGTACGTACGAATGTGGAACTTGCCGCAAAGCTTTTCCTAAAGGATTCAACTTAAAACGACACATTCTGTCACATCTTCCAGAACAAAGTTATCCATGTCCATTTTGCAAGAAACTTTTCACACAAGAAATTTACAGAGAAAAACATATCAAAGCTTTACACGCTGACGCTAATGGAGTGCCTAGTAATATAGATGAAACTCCACCCATTGCTCCATATAGTTGTCAAAAATGTAGAATTCGTTTTGATTTATCCTCTACGTTTCTACTTCACATGCAATCTCATTATCATCCAAATCAGAACGATGAAAACGTGCCTCAAGCGCTCCCACATCAATCGACAGTATTCTCATGTCCTGCTTGTTCTCAATGTTTTGATACTAAAAATGAAGTATTACGACATGTTGTACACTCACACGCACAGAAAGAAGAAACATATGCCTGTGATCAGTGTCATAGGGTATTTTCAAGTTCTGAGGCACTTGAGAGACACAACGCCATTGCCAGTGATGATAGTTTACCATTTAGTTGCGTTGAATGTTGTAATAGATTCAATTCCGCCATTGCACTCACAGGACATGCTAGGATACATAAAGGCTTGTTATTTCAGTGTCCCATGTGCAATAAAAATTTTCATTCCCTGCAAGTCATGAGGTTTCATGTAAGAAGTCATCTTATAGATGGATTTTTTCACTGCCCCAAATGTCCAAAGAAATTCACAGAATACCAAGTCATTCGAAAGCACATTCGTACGTTTCACAGTGAAAGACAGTTTGATTGTCAACTTTGTATAAAAGTGTTTCCTACCCAGGACAAACTTCGAATGCATATGCTGAGACATTCAGATCACCGAGAGTTCTTGTGTGCAAACTGTGGAAAACAGTTCAAACGTAAAGACAAACTCAAAGAGCATATGATACGTCAACATAATCCAGAAGACAACAGAAAATACGAGCCACCTTCTCAAACACAATCGATTACTGTGGAGGAGAaacttttcaagaaaaaaaacttgtCTCTTTCATCCAATGCTCTTACATCAGTCCAAAAAAATTCCATAGAATATGGTCGTTATGTCTCTCAGAGAGCTGACTATAGCCGTTGTACATACAAGTGTCACCCGTGTCAAGTAGGATTCAAAAGACGTGGCATGTTGatttacaAAAGTAGCTCCAAGAGAAAAtcccatattttaaaaaatcatcctGGACAAGCGTTACCTCCTAGTAATAGGCTCAAAcatGGTAATTCAACTGAAAGTGACGACCTTCCTAATCCAACATTTTCTCAAACGGTTGGCAGTATAACTAGCAAACCTCAAGGATGTCAATGGTGTCACAAACAGTATGCTAGTAAGGCAAAGTTATTGCAACACCAGCGCAAGAAACACAATGATTCTCTACCGCCTGATCTGAGGGTACCACGACTATCAAAACAATCATCTTCTGAAGACGACAGTCGAACTGGAGCTTTACCAACATCCTCTCACCCCCGCGCATCTCTACCAGATGAGCATACAGTTCCACCAGGAGAACCATCAACTGCAGCACTAACATCCGTTTTGAACACGAACACTGTTGATATGACATCAATCAGTTTAAGTGGAAAGCAAGATGAGCACAATTTTGAATTGTCTGCCACGGACATCTATGCTGACACTCTCAACATGAAATCTGTCAATTATAAAAAACTTCACCGACCCAAGCTAGTCAAACAAGATAAAGTGCAGGAGGATATGGATCCACCGGCCAAGACAGAAATGGCATCTGTCCAGACGAGCAGTGCCATAGATATCCcagAAGTGTATGAGTTAACAACAGAACTTTGTCCTGAAACTCTAGAACTTCTTAAGAAACAATTTCGATTAGAAAATGGTGGTGATATCCTTTGTCAAGCACTTGAAGACTATACAACTGGAAAACCTTTATCCACAgaacaaattctgaaattagttGCAGTAAATGGTATTACTATAGTAACCGAATCAAACGATCCACTCCATCTGAACACAAATTATGTGTACTCATCTTATCCACCGCGTTGA
- Protein Sequence
- MSPETSNWMRFVRPARTIDEQNLVLHQKGESIYFTTVKDICLKEELRVWYSRDYAIKRHLPLLETKHASYFSDILVDRTEKCPHCDNYFTKEELRPHIITVHNAPCQTTEAKLLKQDDPDEFDSIDFCQKKVRISERIASQKQAPPVSEDIVTLPPTQSNEQIKSSQVVSSKRRTYECGTCRKAFPKGFNLKRHILSHLPEQSYPCPFCKKLFTQEIYREKHIKALHADANGVPSNIDETPPIAPYSCQKCRIRFDLSSTFLLHMQSHYHPNQNDENVPQALPHQSTVFSCPACSQCFDTKNEVLRHVVHSHAQKEETYACDQCHRVFSSSEALERHNAIASDDSLPFSCVECCNRFNSAIALTGHARIHKGLLFQCPMCNKNFHSLQVMRFHVRSHLIDGFFHCPKCPKKFTEYQVIRKHIRTFHSERQFDCQLCIKVFPTQDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHMIRQHNPEDNRKYEPPSQTQSITVEEKLFKKKNLSLSSNALTSVQKNSIEYGRYVSQRADYSRCTYKCHPCQVGFKRRGMLIYKSSSKRKSHILKNHPGQALPPSNRLKHGNSTESDDLPNPTFSQTVGSITSKPQGCQWCHKQYASKAKLLQHQRKKHNDSLPPDLRVPRLSKQSSSEDDSRTGALPTSSHPRASLPDEHTVPPGEPSTAALTSVLNTNTVDMTSISLSGKQDEHNFELSATDIYADTLNMKSVNYKKLHRPKLVKQDKVQEDMDPPAKTEMASVQTSSAIDIPEVYELTTELCPETLELLKKQFRLENGGDILCQALEDYTTGKPLSTEQILKLVAVNGITIVTESNDPLHLNTNYVYSSYPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -