Pven004594.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022878.1:2200129-2203620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 1.3e+02 3.5 1.3 2 21 21 40 20 43 0.93 2 17 0.011 1 10.1 0.2 2 23 79 101 78 101 0.95 3 17 0.53 50 4.8 2.7 1 23 113 137 113 137 0.87 4 17 2.2 2.1e+02 2.9 1.1 1 23 184 207 184 207 0.87 5 17 0.03 2.8 8.8 3.2 1 23 306 329 306 329 0.90 6 17 0.001 0.097 13.4 1.1 1 23 383 406 383 406 0.97 7 17 0.00068 0.064 13.9 0.4 1 23 449 472 449 472 0.97 8 17 0.0027 0.25 12.0 1.0 1 23 478 501 478 501 0.96 9 17 0.00019 0.018 15.7 1.2 1 23 542 564 542 564 0.97 10 17 0.0026 0.24 12.1 3.0 1 23 570 593 570 593 0.98 11 17 0.00016 0.015 15.9 1.2 1 23 619 641 619 641 0.99 12 17 1.7e-05 0.0016 19.0 1.3 1 20 647 666 647 667 0.95 13 17 8.7e-05 0.0081 16.8 0.4 1 23 675 697 675 697 0.97 14 17 0.00051 0.048 14.3 4.9 1 23 703 725 703 725 0.97 15 17 3.9e-05 0.0036 17.8 1.7 1 23 731 753 731 753 0.98 16 17 0.00063 0.059 14.0 2.4 1 23 760 782 760 782 0.96 17 17 1.7e-05 0.0016 19.0 1.0 1 23 788 810 788 810 0.99
Sequence Information
- Coding Sequence
- ATGTACCTTCAAGTTTCAACTGTTCATTTAAGAAAACCTGGCGGATGgatGTATCGATGGTCCTGTTGCATATGTCCTGACAAATTCGGTGCTTCCGATGATTTAATTACCCATATTCGGTGTTCCCATAGTAATGGCAATGATGCAATGGATGAAGCCACTACGAGCACGACTGACGTTTGTTACAAATGTGGAAACAGTCTCCTTTATCATAGAATTATTCAAAATGGACTTGAATGTTACTATTGTAGTTTGTATTTTGAAGATAAGCTCAGCTTAACTTATCATATTCAAATAATTCATGGGAAACTCATTTGGGGTGACAAAGTCGAGTTTTATACTTGCAGAACATGTTGCAATAAGTTGTATAGTCGACGGCAAGACATTGTAAAACATATGCGCGATGTTCATCAGAGTGGTGTGATCAATTGGAATGAATGCGTTGTACGATCATTGGAAGACATTCAATTTCCTTGTCAACTCTGTGGAACACAATGTATGCTTTCATATTATTGTCAAAGTCATTTAGGATATAAGAATCAAGTTCATCATTGTTGTTCATATTGTGAGGAAATATTTCTGgataaaaatattcttgaaGCTCATATTTATATTGATCATGGCAGTGAAGTCAATGCTGCTGGTGGCAATGTTGCTGACGCTGCCAGGTTCCAATGTTTTGTCTGTCGGGATTGttgtaatgttttgttttatgatcgtttggattttgaaattcatatgaGAGACGTACATAGACAAGTCAATGTAAAGTGTGAATCGTTTGTTGTGACTAGTTTAAAGGATGTTCTTCTTGAATGTGAATATTGTCGTCAGCCTTGTTTGGATTCTAGATTTTGTGTATTACATAATGTTAATATTAGCATTAATGAAAAATGTGTTCAACATAGGGATAGTCATTCGTGTGATCTTTGTCAATTGGACTACACAGATTGTAGTTCATTGTGGAAACATTTGTTTGATCAGCATGTAAGCGAAAagttattttgtaatttgtgtTCAAAATTATCGAAAAAAGTTTGTATGAAATCGCCTTACACGcttgtaaaacattttattcGAGTTCATGGCGTGAATGATCCAAGTCTGAAGGAGAAATCGTCGATCGTTGTTGACGGTAAACGAAAGTTTCAATGTTTCATTTGTAAAATTGTCGTTCGGAAGTTTGTGGCTTTAAAAAGGCATATGTTGAAAAAACATTCGAAAAGTTCGTCGCTCTCCAAGAAGATGAATtgcaaaagaaatagaaaaatgacGAGTAAAGTTGTTGATCAGAGCGATGAACTTAAAGAGAAATGTAGGATTATTGTTGATGAAGTTGTCAAGTATAAATGTACTTCTTGTGAGAATACTTACAAGAGACTTGCAAGTTTGAGAGAACATATTTCCATTGTACATTCTCAAAATGAACAACACAAATGTACGATTTGTGGTAGCTCATATGTTCTTGCAAGAACACTACGAGCACATTATATTTCCAAACATACTGCCCATATAGAAATTGAACGAAAAGAAATCTGCATTCAACCTCAAATGACAACGGGAACGAATGACTATAATCTGATCAAATGTGAAACTGAAATCTTAGATGGTGGTCGAACCAAATATAAGTGTCCACTGTGTGATAAGATTTATACCAGTTTTTCTGAAACCAAACGACATTTTGAAGTACAttcgggagaaaaaaaatacgaatgtTCAATTTGTAAGAAATCGTTTTTCATTAAGAATCGATTGTCTGAACATTATCGACGAAAACATCAAATGAAAGTATCGGTGGCTCGAACAAATCAAGCGAAACAACAATCGGAAGTTGTTGTCGATGGTGTAGTCAAATATAAGTGTGACGTTTGTCAGTCGTTGTTCAAAAGATACGATTCACTTCGGTTACATTTACGAATACATTCGGGAGAGAAACCTTACACGTGCGATGTATGTGGAAAATCGTTCGTTGCTAAGAAACATTTAACGCGACATTTCAATTGTTCACACGGCGGTTATGGGTATCAATGTAATATATGTGGCCGCGTAATGAGTGATAGCACAAATTTCAAAGATCATTTGGATAATCATCGCGGAGAAAAGAAGTACACGTGTGAAATTTGTGGAACAGGATTCATGTATAAATCGTCACTTCACCATCATCGGTTTAGTCACAGTGCGGAACGAATGTTTCAATGCTCGTATTGTGATAAGAAATATATGAGCCCGAAAACGTTGAAAGAGCATGAACAAATGCATAAGAATGAGGGCGTTAAACATATTTGTGAAACATGTGGCAATGAATTTAATACGAGAAAGAATATGTTACGACATACTAAGGTGCACTCGAGTGAACGGCCGTACGTTTGTGAAATTTGTAGTGTtagttttaaagaaagaaaatcactTGTACGTCACTATAAAACACATAAAGCGTaa
- Protein Sequence
- MYLQVSTVHLRKPGGWMYRWSCCICPDKFGASDDLITHIRCSHSNGNDAMDEATTSTTDVCYKCGNSLLYHRIIQNGLECYYCSLYFEDKLSLTYHIQIIHGKLIWGDKVEFYTCRTCCNKLYSRRQDIVKHMRDVHQSGVINWNECVVRSLEDIQFPCQLCGTQCMLSYYCQSHLGYKNQVHHCCSYCEEIFLDKNILEAHIYIDHGSEVNAAGGNVADAARFQCFVCRDCCNVLFYDRLDFEIHMRDVHRQVNVKCESFVVTSLKDVLLECEYCRQPCLDSRFCVLHNVNISINEKCVQHRDSHSCDLCQLDYTDCSSLWKHLFDQHVSEKLFCNLCSKLSKKVCMKSPYTLVKHFIRVHGVNDPSLKEKSSIVVDGKRKFQCFICKIVVRKFVALKRHMLKKHSKSSSLSKKMNCKRNRKMTSKVVDQSDELKEKCRIIVDEVVKYKCTSCENTYKRLASLREHISIVHSQNEQHKCTICGSSYVLARTLRAHYISKHTAHIEIERKEICIQPQMTTGTNDYNLIKCETEILDGGRTKYKCPLCDKIYTSFSETKRHFEVHSGEKKYECSICKKSFFIKNRLSEHYRRKHQMKVSVARTNQAKQQSEVVVDGVVKYKCDVCQSLFKRYDSLRLHLRIHSGEKPYTCDVCGKSFVAKKHLTRHFNCSHGGYGYQCNICGRVMSDSTNFKDHLDNHRGEKKYTCEICGTGFMYKSSLHHHRFSHSAERMFQCSYCDKKYMSPKTLKEHEQMHKNEGVKHICETCGNEFNTRKNMLRHTKVHSSERPYVCEICSVSFKERKSLVRHYKTHKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -