Pven001694.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022876.1:26138249-26141218[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.02 1.9 9.3 4.4 2 20 12 30 11 32 0.88 2 13 0.12 11 6.9 1.8 1 23 104 127 104 127 0.91 3 13 0.0049 0.46 11.2 1.6 2 23 129 151 128 151 0.95 4 13 0.011 1.1 10.1 1.6 1 23 161 184 161 184 0.97 5 13 0.01 0.97 10.2 1.3 1 21 197 217 197 218 0.95 6 13 0.012 1.1 10.0 4.3 1 23 755 778 755 778 0.95 7 13 1.5e-05 0.0014 19.2 0.2 3 23 786 806 784 806 0.96 8 13 1.3e-05 0.0013 19.3 3.5 1 23 811 833 811 833 0.98 9 13 0.00077 0.072 13.8 4.2 1 23 839 862 839 862 0.95 10 13 2e-05 0.0019 18.7 1.2 1 23 867 889 867 889 0.97 11 13 8.8e-07 8.2e-05 23.0 4.3 1 23 895 917 895 917 0.98 12 13 0.00011 0.01 16.5 7.5 1 23 926 948 926 948 0.97 13 13 0.00022 0.021 15.5 0.2 1 20 955 974 955 976 0.95
Sequence Information
- Coding Sequence
- ATGCAAACACATAATAAACGTTTCACACATTATCTTTGTACAtgttgtaataaaaaatttaaacataaatCCAACTTAGATAAACATGAACAAGCTATTAAAGAAAAGACAAATAATAAACATGAACAAgctattaaagaaaaaacaaataatttaatagaaatatataattgtataaaatgtaataataaatataaacgaATATTTCATGAAGAATCATTTAGtgcttcaaaaaaaattacaacttaTTGTCACATGTGTAATCCTAATAATAGTTCTTATAATTtagaatataaagaaataagAATTCATATATGTAAATTATGTGATAAACAATTTGATAGTGTGGAAACGTATGATGAACATAGAACATCTTATCATTCAACATGTGATTTTTGTgatgaattttttaataaaaaactattattaAGACAACATATTGacaaaaaacacattgaaaCGAAATATAATTCCAAATGTTTTAAATGTAAACTATGTAATATTGAAACAAGATTTTATTCTGcattaaaattacattatttatCTCAAcatagaaatgaaatgaatttaaatgattttaatagAATATATCAATGTTATTATTGTAGTCAAAGATTTCCAtttaaaactgaaattaaacaacatttacaaatgtgtgaaaaaaatgaacaaattatgaAAGTTCTAGAAAAGGATGTTGTAAGTTTTGGAACATCGACTAAGAATAGATTTATGAATAATGAAGTTGttgaatcaaatgattttttcataGAGAACGAAAACGTAAATGATATTATAAATATTGaggaaacatttttggaaaatgatgTTCTATATTTTAGAAATCAAGTAGATAAATTTAATTCACGTGAAACAATtgtgaaagaaaattttgtcCAAACAACaacgattgaaaaaaatattccgtgTGTAGAAGAAGGACGGCACAATATAGAAGTGACAGAAGAACTACATAGACGAATAGAAGTGATTGAtaatgatttaaatttaataaaacaaaaattgttgaatcaaaataaaattgagttgAATAGAAATAAACGGAAACTTGAAATCGGAcgtgaaaaaaatcttgttgaAAATGAGATTAAAGAATCAattgagaaattgaaaaatgaagatCATATTATTGTAAATGAAGACGATGATGAAATGGAATTATGCCAAAGtgaatgtaaacaaaatgtttcaatTATAGAAAACGATGAAATCGATGATGTTGGAGAAGAACTTACAGAAgaaattaatgattttataaaaatcaacagTCAAAATGTCGGTAgcaacataaatattttaaagagaaccgaacaagaaaatcaaattaaatttaagaaatataaatcCAAAGAAATAATAGAAACAATTCTACCGGATGACTTTATTGACTATGAAgagatcaatatttttgagaacgaTAAATATGTAGAAAGCAATCCTATAAATGTTGGACAAataatcaaagaaaataatgaaaacactGAAACTAAGGAATACATTGAAACAGTTCTACCAGATGTTGAAGATTTTATTCAATATTACAACGTAGAAACTGAGTCTGGTGATGAAATCAACCTTATTAATGAACAAAGAACTAAAGAATATACtccaatcaaatttaaaaacagtaAAACTAAAATAGAAACAATTCTGCCAGATTTAGAAAACTATCATGGTGAAGATACCCAACATgacattatcaatgttatacaaAAAACTAAAGAGAAGGGTCgtcaaatgaaatttagaaacacTAAAACAATTAAAACAATGTTTCTCACTCCGCCGAATCAGGTTCAAAAAGAacaagagatacagaaaaataaacataatctAGAAGAAAATGACAATGTTACTGACAAATTTAAATCCAATATAATTACAACAATTGACGGAGAAATTATTCTTCCAAGTGTAGAATGTGACGATACAGAAACAGTAATACTTCAATTAGAGGAagacaccaaatttgatgaTATCAAAGATAAAACCAACCAAATCTTATGTGATAAAATTACAACGAATGTTGCAAAAACTATATTTTCTGCTTATTACGACtgtcaaaaagaagaagaagacgacGAAGAAAGAGAAATACTTGAATTGGAAGAGGAACATCTTGCAAAAAGCgaagatgaaataaataatgaatttgaagaaaataatgactTGACAGACAACGACgcaaatgaacatttaaatttcaatacaaacgtgaagaaaaataataaaagttatcCATTTAGTTGTTATATATGTTCAAGAAAATATTCTAGCAAAGTCTGTTTAGTTCGTCATTTTCGTGATAATCACGTCAATGTTGACCCAATCATATGTGATATATGTggcaaaatatttcaatctagaaattcattaaaaaatcacATATCAATACATTTACCACACGCTTACAAATGTTCTCATTGTGATAAAACATTTCATCGCAAAGATGCTTTAGCCTCACATGAGTTAGTACAttctaataataaacaatttcaaTGTTCCTTTTGTGATctaaaatttcgtcaaaaacaATCTTTACATACACATATAGTTTCCAAACATGATATTCAATTCTATGATTGTTCTATGTGTACTCAAAAATTTGCTCAAAAATCTGGATTAAAAAGACATTATCTAATACATACACAGgaaagaaattttgtatgttcaatatgtgaaaagaaatttaaacaaaagaatCATTTGTCCAAACATATGTTAACGCAtgatgaaatagaaaaaacatgTGTTTATAAATGTGAAGATTGTGATAAGTGTTTCTATAGAAAAGATTGTCTTTTGAAACATAAAGTACGACATGATACGAATCGACTGATGTATCCTTGTGAAAGATGTAATAAAATGTTTAAGAGTAAATATGGTGTTGAGAAACATATTGAGGAACAAGTTTGTTGGAGGAGAACTTTATATAATCGATTGATGtaa
- Protein Sequence
- MQTHNKRFTHYLCTCCNKKFKHKSNLDKHEQAIKEKTNNKHEQAIKEKTNNLIEIYNCIKCNNKYKRIFHEESFSASKKITTYCHMCNPNNSSYNLEYKEIRIHICKLCDKQFDSVETYDEHRTSYHSTCDFCDEFFNKKLLLRQHIDKKHIETKYNSKCFKCKLCNIETRFYSALKLHYLSQHRNEMNLNDFNRIYQCYYCSQRFPFKTEIKQHLQMCEKNEQIMKVLEKDVVSFGTSTKNRFMNNEVVESNDFFIENENVNDIINIEETFLENDVLYFRNQVDKFNSRETIVKENFVQTTTIEKNIPCVEEGRHNIEVTEELHRRIEVIDNDLNLIKQKLLNQNKIELNRNKRKLEIGREKNLVENEIKESIEKLKNEDHIIVNEDDDEMELCQSECKQNVSIIENDEIDDVGEELTEEINDFIKINSQNVGSNINILKRTEQENQIKFKKYKSKEIIETILPDDFIDYEEINIFENDKYVESNPINVGQIIKENNENTETKEYIETVLPDVEDFIQYYNVETESGDEINLINEQRTKEYTPIKFKNSKTKIETILPDLENYHGEDTQHDIINVIQKTKEKGRQMKFRNTKTIKTMFLTPPNQVQKEQEIQKNKHNLEENDNVTDKFKSNIITTIDGEIILPSVECDDTETVILQLEEDTKFDDIKDKTNQILCDKITTNVAKTIFSAYYDCQKEEEDDEEREILELEEEHLAKSEDEINNEFEENNDLTDNDANEHLNFNTNVKKNNKSYPFSCYICSRKYSSKVCLVRHFRDNHVNVDPIICDICGKIFQSRNSLKNHISIHLPHAYKCSHCDKTFHRKDALASHELVHSNNKQFQCSFCDLKFRQKQSLHTHIVSKHDIQFYDCSMCTQKFAQKSGLKRHYLIHTQERNFVCSICEKKFKQKNHLSKHMLTHDEIEKTCVYKCEDCDKCFYRKDCLLKHKVRHDTNRLMYPCERCNKMFKSKYGVEKHIEEQVCWRRTLYNRLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -