Pven004607.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022878.1:2252594-2264367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00011 0.01 16.5 0.1 1 23 11 33 11 33 0.98 2 17 0.49 46 4.9 0.4 10 23 68 82 66 82 0.92 3 17 0.11 11 6.9 0.3 2 23 106 128 105 128 0.96 4 17 0.6 56 4.7 0.1 5 23 142 160 140 160 0.95 5 17 3.3e-07 3.1e-05 24.4 1.4 1 23 166 188 166 188 0.98 6 17 0.0033 0.3 11.8 0.7 3 23 196 217 194 217 0.95 7 17 5.6e-06 0.00052 20.5 1.2 1 23 386 408 386 408 0.98 8 17 0.00056 0.052 14.2 2.9 1 23 446 468 446 468 0.94 9 17 0.0012 0.11 13.2 3.5 1 23 474 497 474 497 0.98 10 17 0.00016 0.015 16.0 0.5 1 23 818 841 818 841 0.96 11 17 0.00044 0.041 14.5 1.1 2 23 889 911 888 911 0.91 12 17 0.0072 0.68 10.7 3.8 1 23 918 941 918 941 0.94 13 17 0.015 1.4 9.7 0.4 3 21 969 987 968 988 0.93 14 17 0.00059 0.055 14.1 0.4 1 23 1056 1079 1056 1079 0.95 15 17 7 6.6e+02 1.3 0.2 6 21 1089 1104 1088 1107 0.63 16 17 3.4e-05 0.0032 18.0 3.9 1 23 1115 1137 1115 1137 0.96 17 17 0.00095 0.089 13.5 0.6 3 23 1144 1165 1143 1165 0.96
Sequence Information
- Coding Sequence
- ATGGATGTACATGCTGAACCATCCGGATTTTTTGTTTGTGGTGTATGTGGAAAACTATTTGATAGCAAAGTTAGACTAAACCTTCATATGcaaattcatattaaaaatgagaaaataatttgtCCGTACTCGAACTGTAATGTTATTTTTAAGAGTGATCCCCTAGATGTTCTCCTATCAATATTGTTtctatatatgtattttatttcagCGAGTTATTTGAAAAGACATTATCGTTTAACTCATCCAAACGAAtttgttgaaattgaaaaacaaactcAACACGACAAAATGATGAAACGTTCAGAGCTATGGAAATGTGAACTCTGTTCAAAAATCCTAACAAGTAAATTTATTCTCATGGAGCACATTAAACGAATCCATGAAGGTCTTCCACAAACttataaatatcaaaaagatGGAATTTGTGATGTGTGCGGTGTTTATAAACGACAACTTTGGACTCATAAACAGACCCATTCGGAAAGTCGACCGTACATATGTGGCTACTGtagtaaaagttttaaaaataaaacttatttaGTCCGTCATATTCGAGTTCATACAGGAGAAAAACCTTACGGTTGTGATAGATGTAAGAGAAGATTTACACAAAGTAATGTTCTTTGGAGACATAGAAGTGTTGCTCATGGTTTGATGGATAGAAAATCGTATCCTATAAGGGATAATGTCACCCCAAGTGAATATGATACGAAGGATCCTGTAGATTCTATTGGAAGTAGTAAACACGTTGTAGACAAAGTTAGTGAATCTGCAGATTATGatcgatatttaaaaagacatttaaaaaagaaacacataaatgtaaaagttaCTGTAAACAGAAATCAATCAACCAAACAACGAAATATTACAACCAAGTCTGAAACCATTGTATCAGCTCGAGAAAATGTCAAAAcaaaacttgaaacaaaaacaaacgtCCACTTCAATGCGAGAAGTAATGGACCATCAAAATGTTTAGCGTGTAATCAGGTTTTCCAAACACCTTTTGAATATGGAGGTCATAAATTAAGATGCAATCTACGTTTAATCAATACTGAAAGTGAGACTGTTTCTTGTATAAGTACGGAAAAAGTTGAAACTAAATCTTCCAAACAAAATATATCTTCTTCTACTACCGTACAATCTAGTTATCCTTGTCCTCTATGTGATCGTacatataaatcaaaatcaagtCTATATGTACATAAGAAATCTCACGAAGGAAAAACATGGAGATATAAACTTAAAACAAAGCATTGCTCTATATGTAACAAAGAAGTTAAACATCTTGCCTCACACAAAAAAGAAGTACATTTCGATGTACGAACATATCCGTGTGGTTTCTGTACGAAAGTATTTAAAAGACAATTGCATTTACAAAATCATAGCTTTATTCATACAGgagagaaaaattataaatgctatttttgtgataaatattttagacAAATTTCAGATAGAttaaaacatatgaaaataaagcATAGATATTGTCAAGAAGCGAGGGTTGATTTGGAAAGTTTAGAAAAGTCAAATCATACAGcctttgaaaatattcaaacataTGGCAGAGAAGATCAAATAATATCGACTGTCGAATTGGATGAACCATTGAATGATTCCGAAAAAGTTGATGAAATTCGATCTGAAAACGATGATGACGACATccttaaaaatcaaatcattgaaattcaaacaatagataaagaagaagaatttttggTGATGATCGCTCCCGAACATTTCAATCCAGAAATCGACAAAAATTATGATCCATCTGAAAATGAAGTCAACAACAAAATGAGCGAACTTGACAACGTTGTCgtgtataaaattgatagcaaaaatcaaattattgaaattcaAAGAAAAGATGTAGTCGACAATGATGACCTATTTGAATTAATTGCGCCTAAAAATATAAGTCTGGAAGATGAGAGTTTAGAAGAAATCGATCACGTTACCATAATGAATGAACTGTCTGAAAGTcaattaaaacattttgattCCATTGAAGAGAACACTTATGAGATTATCACTCCTCAatgtttggaagaaaaaaataaatccaaaattatctcagaagaagaagaagatgatgatatTTCGTCTGACAATGACGATAACGAAATCAAAAACCTAATccacaaaattaataatgaaaataaaagaaataaaattcagagaCAAAAGAATAATGTGGCCAATGACAATTTGGAAAGAGGTTTGGACGAACAAATCAACTTAGATGAAGATATCCAATCTGAAATTAAGGacgaaaaaatggaagaaattaaaaacttcatcttcaaaattgaaaacgaaattaaaattcaaacccaaaataaagaagatGTTACAAATAATGAAACCCTTGTCAAGATGAAAACTTCCGTAAATACAGTTGATCCAATCAATCCATCGTCAAAAacgaaaaaacgaaaatttccTTGTTCAACGTGTGCGATCACATTTGATACGAACAAACTTCTACAACGACATTTGAGAGAATCACATGGAATACGAACATCTGATCGCTTTACATATGATTGTTGTTATTGTACGGAAGTGTTTCATCTTCGTCAGACGTACCATGATCATTTGATAAATATTCATGGACAGTCGTCTGTTTCTAAACGTTATCGATTTCGTATCTGTGCTTGTACAATATgtggaaaaatgttttttaattcgAGAGCATTGAAATTACATTCTGAAATGGTTCATAGCAATGAGGAGAATCTATTCCAATGTGATctatgttctaaatatttccgTACAAaaaaatacaTACGAGAACATATAACCCATGtccacaataaaataaaaacatctcgatccaagaaaaacaaaccaaaaacaTCTAAACCAATTTctgataataatgaaaaagtaGATTGTACGTTATGTTACAAAAGTTTCAACAATGCACGTCAACTTAGCGGTCACCGAATGAATTGTAGTTACTATTTATTAAAACCAAACGAAACCGAAACCAAAAATGACATCCCTTTACAATCTATTGAAGTAACTACTGAAGATGAGAAAACATATTTAATGATACCAAACAGTAGTAGTCAAATGACATCGTCATTTGGTAACAGAAACGATCATTGTAGATCTTATAAATTAGGAAGTAAGAATACAGGTGGTCCACCCTATTACTGTCCTCTATGTAACAAGGAATACAATGTCAAAGCATCTCTCTATGTTCATATATCaaataaacatgaaaataaaagttcaaaatataaaccatGTAATTTGTGTGGAACTCAAGTTAAAAATTTACATGCACACATTGACGCCGTTCATTCTTATCCAGATGTTAAGCCACATATGTGTGATATATGTGCGAgatgttttaaaagaaaatcatcgCTCAATGCACATCGACTTATTCATACTGGTGAAAAAGTTCTGTGTCCTGTTTGTAAGAAAGGATTTACTCAAGCAGGAGATATGCATAAACATGCTAAGAATGTACATCAGATTCACATTCCTAGGAAGTTTCAACGAGATAGTTATAAGAAAACATCAGaagaaaatcaacaacaaccaaaGCCGACCATTTTTATTTATGGAAAACAAATTGTTTTGGAATAA
- Protein Sequence
- MDVHAEPSGFFVCGVCGKLFDSKVRLNLHMQIHIKNEKIICPYSNCNVIFKSDPLDVLLSILFLYMYFISASYLKRHYRLTHPNEFVEIEKQTQHDKMMKRSELWKCELCSKILTSKFILMEHIKRIHEGLPQTYKYQKDGICDVCGVYKRQLWTHKQTHSESRPYICGYCSKSFKNKTYLVRHIRVHTGEKPYGCDRCKRRFTQSNVLWRHRSVAHGLMDRKSYPIRDNVTPSEYDTKDPVDSIGSSKHVVDKVSESADYDRYLKRHLKKKHINVKVTVNRNQSTKQRNITTKSETIVSARENVKTKLETKTNVHFNARSNGPSKCLACNQVFQTPFEYGGHKLRCNLRLINTESETVSCISTEKVETKSSKQNISSSTTVQSSYPCPLCDRTYKSKSSLYVHKKSHEGKTWRYKLKTKHCSICNKEVKHLASHKKEVHFDVRTYPCGFCTKVFKRQLHLQNHSFIHTGEKNYKCYFCDKYFRQISDRLKHMKIKHRYCQEARVDLESLEKSNHTAFENIQTYGREDQIISTVELDEPLNDSEKVDEIRSENDDDDILKNQIIEIQTIDKEEEFLVMIAPEHFNPEIDKNYDPSENEVNNKMSELDNVVVYKIDSKNQIIEIQRKDVVDNDDLFELIAPKNISLEDESLEEIDHVTIMNELSESQLKHFDSIEENTYEIITPQCLEEKNKSKIISEEEEDDDISSDNDDNEIKNLIHKINNENKRNKIQRQKNNVANDNLERGLDEQINLDEDIQSEIKDEKMEEIKNFIFKIENEIKIQTQNKEDVTNNETLVKMKTSVNTVDPINPSSKTKKRKFPCSTCAITFDTNKLLQRHLRESHGIRTSDRFTYDCCYCTEVFHLRQTYHDHLINIHGQSSVSKRYRFRICACTICGKMFFNSRALKLHSEMVHSNEENLFQCDLCSKYFRTKKYIREHITHVHNKIKTSRSKKNKPKTSKPISDNNEKVDCTLCYKSFNNARQLSGHRMNCSYYLLKPNETETKNDIPLQSIEVTTEDEKTYLMIPNSSSQMTSSFGNRNDHCRSYKLGSKNTGGPPYYCPLCNKEYNVKASLYVHISNKHENKSSKYKPCNLCGTQVKNLHAHIDAVHSYPDVKPHMCDICARCFKRKSSLNAHRLIHTGEKVLCPVCKKGFTQAGDMHKHAKNVHQIHIPRKFQRDSYKKTSEENQQQPKPTIFIYGKQIVLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -