Pven008542.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022881.1:23796766-23823031[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.059 5.5 7.9 0.1 1 23 45 68 45 68 0.92 2 17 7.8 7.2e+02 1.2 5.5 1 23 573 599 573 599 0.74 3 17 1.5 1.4e+02 3.4 1.8 1 22 633 654 633 656 0.88 4 17 0.0099 0.92 10.3 1.8 1 23 700 723 700 723 0.97 5 17 0.11 10 7.0 0.1 1 23 734 757 734 757 0.97 6 17 0.0014 0.13 12.9 2.9 1 23 763 786 763 786 0.98 7 17 0.0004 0.037 14.7 1.9 1 23 793 816 793 816 0.97 8 17 0.015 1.4 9.7 0.7 1 23 824 847 824 847 0.93 9 17 4e-05 0.0037 17.8 0.5 1 23 853 875 853 875 0.97 10 17 8.3e-05 0.0078 16.8 4.3 1 23 882 904 882 904 0.98 11 17 5.8e-08 5.4e-06 26.7 2.5 1 23 909 931 909 931 0.98 12 17 4e-05 0.0037 17.8 4.7 1 23 937 959 937 959 0.99 13 17 0.00019 0.017 15.7 4.0 2 23 966 987 965 987 0.96 14 17 2e-05 0.0018 18.8 0.4 2 23 994 1015 993 1015 0.97 15 17 0.00039 0.037 14.7 0.6 1 23 1022 1045 1022 1045 0.96 16 17 3.5e-05 0.0033 18.0 0.5 1 23 1051 1073 1051 1073 0.97 17 17 0.0032 0.3 11.8 0.4 2 23 1080 1102 1079 1102 0.92
Sequence Information
- Coding Sequence
- ATGGAAGCTTCAACGTCAAATAATACATGTACTGGTCTAGGTAACACCAGTATCCAATGTTGCACAAAATGTCCTGACAAGTTCCTATCCAATGATAAATTAGTACTTCACTATGTTATGaatcataaatattatatttgtgaAATATGCACTGCCGTCACATCTACATTAGATGATATGAAAAGTCACGAGCTTGAATCTCACCTTCCCTTGAAATGTGagatttgtttttattctatAACTGAAATAGCCGATCTTCCTTCTCATAAAGAAAATAcacataatttaattaattgttaTTTCTGTCCTTTGACTTTAAATTCAACATTTgaactaaattttcatttaaaacgaAAACACTTTGTTTTGGTTGAACCTTTGAATATAGAAAATGGATTGGTGAAAGATTTTTATGTTAGCAAATGGGGTTATATGTGTGTCCTGTGTGGAAAACATAGGGAGAAAAATGGCTTGGTCGGCCATTATCGTGGATTTCATCGAATCGCTGTTTCAATGTTGgcaaaaattttgttaaaacaaaacattaatttgTCTGTAGATGGTACCATCAGTAATAATAACACGGACGACGCAATCTCTGAATTTTCTGACGTTCAGCATATTGatgagACCACTATGAGGCCTACTGATGATGATTGTACGTTAAGTGTTGATACCGGTTCCAGCGGTACTATATTGgaacaaacattaaataaacGGGGCAATATTTCGAATGATAAACTTGCTGAGAACAACTCTTGTAATTTAAATGGGAAACCTGTGCAACAGCCATTGGATAGAAAGGACACTGTTTTCAGGACAAATGTGGATTCAGTTGATAGTTCAGTTAGAAATGATTTTCTGATCAATATTGCTGGCGAGAAGGAAAAAGTTGATAATTTAGATATTAACGTAACTAGGAAAGCTTGTAATGATTTAGGTGACCTAGTCCACAAAGAACAACAAAACCacgttaaaaaaattgataaaacacctttattatttaatatattatccAATAATATTGAACTAACCAATGAAAATCAAGATCAATCTGTTTCAACCAATGATATTCAAGATAAACTTGTCAATGAATTATCAACCAACCCAAATGAAGTTACCTATAATGATGATAGTATATTTTCACCAAATCATATTCTGATTGGACTTTTATCATCGACCAATCAAAATCATGAATcgaataatagaaaaagaaagaatgaagAATTGCCGTTGGTATATCAagacgaagtgagatctagcaATGTTGAGGAACAGAGTGCAATCAAAGAagAATTTGATGATAACGTCGCATTGGCAAGTTGTGTCAAAGTTGAAATCAAGGAGGAAAAATTTACTTCTGAAGAAGAAACGAGCGATGAAGATTACCAGGGAGGAGAAGACACCAAATCAAAAAAAGAAATGTTGCAAGTTTGTGAAGACTTTGATGATATAGACTTGGAAGTTGATCCAAATGATATTGAATGTGTCCTTACGGAAACGTCAGATATTGATGGTGATTCCGACAGTGAACCACAGCAGTTGGCGGAATTGTATAATATGATGACCCAAGgaaaattaaATTCACAGAAAAATGCTGAGAATCAAGATGATACGGATAATGTTCCAAAAAAGATGGGAAAATATTTGGTGCTCAGCAATTTGGTCATTAGTGACAAAGGTGGTTTGAATCAAATGGGTCACTTTCCAAATGGGTTTCGTTGTGAAGTTTGTCATGGTTTCTTTGACTCTAGAGAAGGACTTCGTGAACTTCTTCGGCACATGCGAACTTTACATGGAATCAAATGTAATGTGGACACCAGAAATTTAGTTAGCGTTTTCGATAGCTTTGGTAGAGTTAAAATGTCCTCCTATCCAGAATATTGTGGACCGAttcaCGCGTGTCCATTTTGTACATTGCGAGCTTCATCAAAACGTTTCCTTCGTCAACATGTTTTCGCCTTTCATGGAGATACGTGGCTCATGGACTCACCATCTGGACCTCTGAGTTACAATTGTTCTCATTGTCAGAGTACTTTTTGGCATATGCACGAACGAGATGAACACGAAAAACAAGAACATAGCGACCAAACTCTGTTTCGATGTCATGTTTGCTTACGTCCGTTTATGAGgaAAGTTCTCGTCAATGAACACTTAAAGTCAACCCATCCGGAAACAGCCCCTCTTAATTGTGTCTCTTACAAATGTAAATCATGCGACATACTGGTTCCCGACTATGTCTCTCTGGAAAGTCACGTGAAAAGTGATCACGTGAGCAACACTATGTACAGATGCAGTCATTGCGACCTTCCAttgaaaaacatgaaatcacTAAGGTACCACATTAAGACGCAGCATGTTAATGAGTCTCAAACTTATGAATGTGATATTTGCGGTCGTATCTTGTACAGTAAACGATCTCTCAATTCTCATCATCGATTAAAACATGACAATAAACATCGGATGGGATTCAAATGTCGCCTGTGTGAAATTGTTTTCAACAATAAGGACGAGAGAAAGTTACATTATGCTAACGAGCATACAGATCAAAGTCCATTTATATGCAATATTTGTAATAAAGGATTTAGTTCAAAGTCTGGCCTTTATGGACATAAACAAGTACATAAGGTCGCTGAAAACTTCTTCAAATGTCATTTTTGTCAGAAAGAGTTTACTCGAAGAGACAGTTATAATGAGCATCTACTGATTCATATGGGTCCTAGACACAAATGTCCTCATTGCCctaaagaatttgttcaaagaTCAAATTTAGTTCGCCACATTCGAATTCATACGggTGAAAAGCCATACAAATGTACACACTGTGATAAAACTTTTAGTGATAAGGGGGCGTGCAATTCTCATATACGCGTTCATACGGGAGAGGAGACATGTGCGTGTCCATTCTGTGGACAGACGTTCTCGAAAAAACAGAAATTAAAATACCACGTGCGGAAACATACAGGAGAAGGACTGCTAGAATGTGACATCTGTGCAAAGACGTTCACCAATTCCTATGCGCTCAAAGATCATAAATTAACACACACCAGAAACGCAACCAATTTTACATGTCAAGATTGTGGAAGTGCCTTTACAGAGAATCGATTTTTAAATCGACATCGATCAGTTGCACATAGTGACATTCCAATTTTTGCGTGTCCTTTctGTGAAAAGATCTTTTCTCAACAAACTCGTCTGCGGACTCACATTTTAATTCACGCTGGTGTCAAATATCTTCGGTGTAATTATTGTCCGGAAACATTTGAAACTCGTACACCTCTTCATGATCATTTGGCCGAAGTACACTCTGTGTCTGTGAAACATGAACTTTATAATGAAAGTTTTACTTCGTTAGAACCAGAAGAAGTTGGATTAGTTATGCCAAAGTTTTCGGATCATCAAATTGTGAGAATGACAAATCAAGAGAGAGATGATACAATGCgagaatattttaatagaataattgaaggcaaaattaaattagATGTCGACtttcaatttaaattgattCAAAGAAATCGGAAACCTGCCGATCCAGATAAGAAATGTttgattcaaaaattaaaacaagaacATTCTAGTCTAAAACCTTTGaagcttttaaaaaagaaatcgacCAAAGAGAAAAATTTGaccaaaacaaaatcaaaagaatCCGCTCTTGGCAATGCCAATGGCGAAAGTATGAGATATAATTTACGAGATAATATGCCTAGATTGATTCCGTCAGACAGTGATGATGAGGATGATTATGACTATGTAAGTGTTAGAGATAATATGCCTAGATTGATTCCGTCAGACAGTGATGATGAGGATGATTATGACTATGTAAGTGTTAGAGATAACATGCCTAGATTGATTCCGTCAGGCAGTGATGATGAGGATGATTATGACTATGTAAGTGTTAGAGATAATATGCCTAGATTGATTCCATCAGACAGTGATGATGAGGATGATTATGACTATGAGTATGATGATCTCACTACTTCTCATCATCGTGAAGAGGACGGTTTCGAGGACGCGCCAAGTGTTTTCGAAACGTCTGTTATTAATTTATCTGTTCGAAAATCAATGGAATCGGATGGTGTGCTTGAAAGTGACGTGCCTGCTGCTGCATTCGTAAAGGCAGAGATGGAAGCGAGTGATGATGAGTAA
- Protein Sequence
- MEASTSNNTCTGLGNTSIQCCTKCPDKFLSNDKLVLHYVMNHKYYICEICTAVTSTLDDMKSHELESHLPLKCEICFYSITEIADLPSHKENTHNLINCYFCPLTLNSTFELNFHLKRKHFVLVEPLNIENGLVKDFYVSKWGYMCVLCGKHREKNGLVGHYRGFHRIAVSMLAKILLKQNINLSVDGTISNNNTDDAISEFSDVQHIDETTMRPTDDDCTLSVDTGSSGTILEQTLNKRGNISNDKLAENNSCNLNGKPVQQPLDRKDTVFRTNVDSVDSSVRNDFLINIAGEKEKVDNLDINVTRKACNDLGDLVHKEQQNHVKKIDKTPLLFNILSNNIELTNENQDQSVSTNDIQDKLVNELSTNPNEVTYNDDSIFSPNHILIGLLSSTNQNHESNNRKRKNEELPLVYQDEVRSSNVEEQSAIKEEFDDNVALASCVKVEIKEEKFTSEEETSDEDYQGGEDTKSKKEMLQVCEDFDDIDLEVDPNDIECVLTETSDIDGDSDSEPQQLAELYNMMTQGKLNSQKNAENQDDTDNVPKKMGKYLVLSNLVISDKGGLNQMGHFPNGFRCEVCHGFFDSREGLRELLRHMRTLHGIKCNVDTRNLVSVFDSFGRVKMSSYPEYCGPIHACPFCTLRASSKRFLRQHVFAFHGDTWLMDSPSGPLSYNCSHCQSTFWHMHERDEHEKQEHSDQTLFRCHVCLRPFMRKVLVNEHLKSTHPETAPLNCVSYKCKSCDILVPDYVSLESHVKSDHVSNTMYRCSHCDLPLKNMKSLRYHIKTQHVNESQTYECDICGRILYSKRSLNSHHRLKHDNKHRMGFKCRLCEIVFNNKDERKLHYANEHTDQSPFICNICNKGFSSKSGLYGHKQVHKVAENFFKCHFCQKEFTRRDSYNEHLLIHMGPRHKCPHCPKEFVQRSNLVRHIRIHTGEKPYKCTHCDKTFSDKGACNSHIRVHTGEETCACPFCGQTFSKKQKLKYHVRKHTGEGLLECDICAKTFTNSYALKDHKLTHTRNATNFTCQDCGSAFTENRFLNRHRSVAHSDIPIFACPFCEKIFSQQTRLRTHILIHAGVKYLRCNYCPETFETRTPLHDHLAEVHSVSVKHELYNESFTSLEPEEVGLVMPKFSDHQIVRMTNQERDDTMREYFNRIIEGKIKLDVDFQFKLIQRNRKPADPDKKCLIQKLKQEHSSLKPLKLLKKKSTKEKNLTKTKSKESALGNANGESMRYNLRDNMPRLIPSDSDDEDDYDYVSVRDNMPRLIPSDSDDEDDYDYVSVRDNMPRLIPSGSDDEDDYDYVSVRDNMPRLIPSDSDDEDDYDYEYDDLTTSHHREEDGFEDAPSVFETSVINLSVRKSMESDGVLESDVPAAAFVKAEMEASDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -