Pven007188.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- PRDM5
- Assembly
- GCA_012654025.1
- Location
- CM022880.1:26040514-26051245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 9.5e-06 0.00089 19.8 0.2 2 23 234 256 233 256 0.94 2 24 0.00062 0.057 14.1 1.3 1 23 278 301 278 301 0.96 3 24 1.2e-05 0.0011 19.5 0.4 2 23 308 330 307 330 0.97 4 24 0.27 25 5.8 0.3 2 23 372 394 371 394 0.96 5 24 0.0019 0.17 12.6 0.1 1 23 427 450 427 450 0.92 6 24 0.0018 0.17 12.6 0.2 2 23 457 479 456 479 0.95 7 24 0.091 8.5 7.2 1.4 1 23 486 508 486 508 0.97 8 24 0.12 11 6.9 0.2 3 23 565 586 565 586 0.96 9 24 7.7 7.2e+02 1.2 1.4 2 15 631 646 630 654 0.77 10 24 0.0059 0.55 11.0 0.2 2 23 663 685 663 685 0.95 11 24 0.097 9 7.2 0.1 3 23 693 714 692 714 0.96 12 24 0.00029 0.027 15.1 1.4 1 23 721 743 721 743 0.97 13 24 0.034 3.2 8.6 4.7 1 23 792 815 792 815 0.97 14 24 4e-06 0.00037 21.0 1.3 2 23 822 843 821 843 0.97 15 24 0.00027 0.025 15.2 1.0 2 22 863 883 863 883 0.94 16 24 0.0002 0.019 15.6 1.1 1 23 903 926 903 926 0.96 17 24 0.057 5.4 7.9 0.4 2 23 961 984 960 984 0.95 18 24 0.079 7.4 7.4 0.8 2 23 995 1017 994 1017 0.95 19 24 0.0013 0.12 13.0 0.2 3 23 1083 1103 1081 1103 0.96 20 24 0.0021 0.2 12.4 3.3 1 23 1141 1164 1141 1164 0.95 21 24 0.056 5.3 7.9 1.2 3 20 1173 1190 1172 1192 0.93 22 24 0.73 68 4.4 0.1 2 23 1227 1249 1226 1249 0.94 23 24 0.84 79 4.2 0.1 3 23 1257 1278 1255 1278 0.91 24 24 3.2 3e+02 2.4 0.9 1 23 1289 1311 1289 1311 0.90
Sequence Information
- Coding Sequence
- ATGACTCAGTCGGACCAGAATAAGATGAATAACTTCAATGAACTCTGCAGGCTGTGCGCCacatttcagaaaacaaaaattgacaTCTTCAGTGACAAcggcaaaaaaagaaaattaaaagaaaaaatacaaatttgtcTTCCCTTTCAGATATCTGAAGGAGACAATCTACCGCGGTATCTGTGCTTCAAATGTATCTTCAATTTGGATAACTATTATACGTTCAGGAAGGGATGTGTCGAAGCAGTCAACATGTTGAAAGTCTTTGCGGCCCAAGCTTTGGAAGCTAAAGCTAAGCAAAATCATTCCAATACCACATCTCTGTCAATGGTTCATAATCTCCTGCCTCAGGTATCGATCACACTAAAAACAATTGACCCAGAAAATGGCACAGAAGCCAATGACATTTCCCAACTGCTAAAACCAGAAATAGTCATGGCCAATGGGAATGAGAATGGTGGCGGTGAGATGAACGGCGGAACAGGGACAGGAGAAGCAGCTGATGATAACGATGGAGAAGACGAAGGCGAAGATGGCCTGAACGATGAGGAAGAGGATGACGATATGGGGTACGATCCAATGAACTTCCTTGAACTCAATGTTGATTCGCAAGAAGATAGTAATGAAGATCATCACAATGCTCCCTCTGTATCTATCAAATATGAAGGAGACGGCCTGAATGGGAATTCCGAATTACTTCCGTGCCCTGTCTGTGGCAAGGTTTTCTCCTCCCGAGCCCACCTTCTTATGCATAGTTCAACCGCGCACGGCATAAATTCGTTTGGAGATGAGTCTGTAGAAATTACACCTCAAGCTGATAACGGCCGacctCATTCTTGTGATCTCTGTGGTAAATCATACACCTTGGCCAAACACTTGTGGGGCCATGTCAAGTCCGCTCATCAGGATCATCCATCGGTGACGTGCGGTGTGTGTGGGAGGACGTTCTCAACAATCTCCAATTTAGTTGAACACAAGAAAACTCGCCATGGCATTGGAGATAATATGAGGAATTCTAGTTACAATCCTTTAAAGCGTGCTTTGGAAGTTGGGTTGGGTGTTCCTCCTAAAATTGCTCGCAGTGAAAACGCCAATGATGTGTCCGGAGAGAAGAGATGCATGCTCTGCGCTCAAAGATTTCCTAATATTGAACGACTTAACATTCACATTCAATCTCAACATGGTATTGATCCTAGCCAATTGGGCATTACTGCGATCCCAATAGAcgccaaaatcaaaattcagcCTGTTACAATGACCGCGGAATCGGATAATGTATTTGCTTGTGAAATTTGCACCCGAGAGTTTGGAGATCGTGCCTCACTTTGGTTGCACATGGTTCATGGGCACAAAGAAGAAGCTGCTCTTTCTTGTGGTAATTGTCTCAAAGTATTCCGAGACAATTTAAGTTTACTGCGTCATGTAGAAACCGAGCATCCAACTGTCCAGCGCCGTTATTCGTGTCAAGTCTGCGGCCGCCAACACGACTCACGCAAGAAACTCATGAAACATGTTGCCATTCATAATTTGTTGGATGAAAATGGCCAACCGTTGGATCCAGGTAGTATGATTAACACCAATAACCAACCGCGACGAACTGCTCCAAACTTCACTACTTCGAATAATGTTGTAACACCTCCGCCACAACTATTTACACCTGCTAATCCTTCCGAGAGAACGTTCGCAGTTGGCTGTCAATTGTGTGCCAAACTGTTTCCATCTGAAGACCGACTCATTCGGCACATTCAACAAATGCACAAAGCGGGCACGTTTTTCGATAAAAACGTTACCAATTTCCAGTACCCGTGTGAAATCTGTGCGTCTAATCATACCACTCGCACGGACCGATGGAATCATATTTTTGAGAAGCATGCTGGAGACGAGAAACTGACATGTCCTCAGTCTCAATGTCGGAAAGTATTTGTGTCAAGCATTCTTTGCGCAGAACACAAAGCTCATCACGACGAACAGGGCGAGTACCCTAACACATGTGAAATTTGTGGTAAAATGTGGAAATCGCGAGTCGAGTTCTATAAACACATGATGGGCGTACATCCCTACTCTTTGCCCAATATGTGTGGCATTTGTTTTAAAGTATTTCTAAATGTGCCCGACCTGCGCGAGCATGTTAAAACCAACCATTATCCACTTGAAACGGACCATTCATGTGATGTTTGTGGAAGACCTTATACAAAAAGATCAAAAATGGCGAGGCATAGACTTATTCATAACGTGGCTGACGACATTCCCTTGCCGTCTCTGTACAGAATTTTCAAACCGAAACCAGACGATATGAAGTGTGAGCTCTGTCCAGATCTGCTGTTCAACTCAATTGAAGAAATCAAAGGACACCGTAGAACCGACCACGCCATGTTTGTGTGTGACTTGTGTTGTAAATATTACAGTCGGAGTACACATTTATGGAAACACGTCAACCGGGTTCACAAAGGTCATCCGGATGTGACGTGCACCATTTGTGGCAAAGTATCCTCGTCGAAAACACATTTAGAAAAGCACATGTACGTTCATGAGAATCCAAATGCAGTGATGTCAATCGACATGAATGACTTCTGTGAAGACATGAATGTTTGTAATCTTTGCCAGAAACAATTCAAACAACCTTACCTTTTGAAAAATCACAAGAAAACGTGTAAAGGACCTCGAAGAGCTTCGTCTCCTCTCCCGGATCCGGATGAAGACGGTATTTTTCGAtgtaaaaaatgtcctaaaatatttGTTAATCCTAACGTCTACAGGAAACATTTAAAAGCGACGCACCTTAAAGCATACTGTGAGCTTTGTATTACGGCGCCCGGGTATGACACAAAAGTCGATCTTCTTGTTCACATCAAACAGGACCACAAAGATTGTGAAGATCTCAAGTGTGATGTGGAAGGCTGCGACAAATATTTTAGAACTACACTCGATGCACTTAAACATCGACGTGAACATAAGTCTGCACAAACAAGATGCCCATccaattattgtaatttctgTGCAGATGTGTTTAGTAACCGAAAGAAACTGTGGATGCATTTGAAGTCATTGCATAAGGATTTGACCAAGTCGATGTGTGCTGTATGCTTCTTAGTCGAGGAAGATCTCAAAGTTCTGGAACAACATGTGGCTACCAAACATAAGAGTATGTTGAAGAAACAATTTGTTTGTCGCATTTGTGCACGACTGATGGGTAATGCACTTAAAGTTACGGAGCACATCAAACTGCATGATGAACGTCTAACAAATTGTCGAATCTGTGGACTCATTTTTGAGAGTGATGACGAATTGAAATCACATATGGAAAATCATACTGAAGTTTTACCTGAAGTCAAAGCTAGAACCGAAAGAAAATCAGCAAGCAATTCATCGACGATGGATATTAAACCCGGTGATTTGTTACCGAAAAGACTTCGTACGATTCATACGTGTAATTTATGTCATCGAACATTCCGCCTGTTGGGCGATCTCATTAAACATAAAGAATCTGAACACGATATCCCTGCAAGtcttgaattttgttacacctgTGATACACAATTCAACTCTGCAGAAGACCTTAAAGATCATACGTGTGAGGGTCTCAACAAGTCTAACGAGGAACTCAATACGAGTGAGGAGTACATTGAACCTAGTCCGACAAGCAAGAGAAGAACCTGGGGAGAGGACAACCAACCGGTTCCTTGCGATCTCTGTCAAAAAGAATGGCCTTCAAAGAAGTTCTTATGGCAACATTTGATACGTTCCCATAAAGCAGAAGCCGGTCTGGCGTGTGGGGTTTGTCTGAAAATTAGTACGAACTATGAAGCACTATTTGTACATCTTGATCAAACGCATCCCGGTTATTTTATTGGAGAAAGTGAAAATTTCACGTGTCGCGTATGTGGCCGATATCATAACGCGCGTCCTAAACTTGAATCTCACGTTCAAGTACATGCTGGAATTGACAAGTCAATCAAACAGCTACATTCGTGCAGCAAATGTTTCTTAAGATGGAATAACCTATCCCTGTAG
- Protein Sequence
- MTQSDQNKMNNFNELCRLCATFQKTKIDIFSDNGKKRKLKEKIQICLPFQISEGDNLPRYLCFKCIFNLDNYYTFRKGCVEAVNMLKVFAAQALEAKAKQNHSNTTSLSMVHNLLPQVSITLKTIDPENGTEANDISQLLKPEIVMANGNENGGGEMNGGTGTGEAADDNDGEDEGEDGLNDEEEDDDMGYDPMNFLELNVDSQEDSNEDHHNAPSVSIKYEGDGLNGNSELLPCPVCGKVFSSRAHLLMHSSTAHGINSFGDESVEITPQADNGRPHSCDLCGKSYTLAKHLWGHVKSAHQDHPSVTCGVCGRTFSTISNLVEHKKTRHGIGDNMRNSSYNPLKRALEVGLGVPPKIARSENANDVSGEKRCMLCAQRFPNIERLNIHIQSQHGIDPSQLGITAIPIDAKIKIQPVTMTAESDNVFACEICTREFGDRASLWLHMVHGHKEEAALSCGNCLKVFRDNLSLLRHVETEHPTVQRRYSCQVCGRQHDSRKKLMKHVAIHNLLDENGQPLDPGSMINTNNQPRRTAPNFTTSNNVVTPPPQLFTPANPSERTFAVGCQLCAKLFPSEDRLIRHIQQMHKAGTFFDKNVTNFQYPCEICASNHTTRTDRWNHIFEKHAGDEKLTCPQSQCRKVFVSSILCAEHKAHHDEQGEYPNTCEICGKMWKSRVEFYKHMMGVHPYSLPNMCGICFKVFLNVPDLREHVKTNHYPLETDHSCDVCGRPYTKRSKMARHRLIHNVADDIPLPSLYRIFKPKPDDMKCELCPDLLFNSIEEIKGHRRTDHAMFVCDLCCKYYSRSTHLWKHVNRVHKGHPDVTCTICGKVSSSKTHLEKHMYVHENPNAVMSIDMNDFCEDMNVCNLCQKQFKQPYLLKNHKKTCKGPRRASSPLPDPDEDGIFRCKKCPKIFVNPNVYRKHLKATHLKAYCELCITAPGYDTKVDLLVHIKQDHKDCEDLKCDVEGCDKYFRTTLDALKHRREHKSAQTRCPSNYCNFCADVFSNRKKLWMHLKSLHKDLTKSMCAVCFLVEEDLKVLEQHVATKHKSMLKKQFVCRICARLMGNALKVTEHIKLHDERLTNCRICGLIFESDDELKSHMENHTEVLPEVKARTERKSASNSSTMDIKPGDLLPKRLRTIHTCNLCHRTFRLLGDLIKHKESEHDIPASLEFCYTCDTQFNSAEDLKDHTCEGLNKSNEELNTSEEYIEPSPTSKRRTWGEDNQPVPCDLCQKEWPSKKFLWQHLIRSHKAEAGLACGVCLKISTNYEALFVHLDQTHPGYFIGESENFTCRVCGRYHNARPKLESHVQVHAGIDKSIKQLHSCSKCFLRWNNLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -