Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022876.1:22422419-22438802[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4e-06 0.00022 21.7 0.8 1 23 249 271 249 271 0.98

2 9 2.8e-09 2.6e-07 30.9 1.5 1 23 277 299 277 299 0.98

3 9 0.0018 0.17 12.6 0.9 1 23 305 327 305 327 0.97

4 9 4.5e-05 0.0042 17.7 0.7 2 23 411 432 410 432 0.96

5 9 1.6e-08 1.5e-06 28.5 0.9 1 23 438 460 438 460 0.98

6 9 0.00022 0.021 15.5 3.4 1 23 466 488 466 488 0.98

7 9 0.00028 0.026 15.1 7.6 1 23 494 516 494 516 0.98

8 9 2.6e-05 0.0024 18.4 7.7 1 23 522 544 522 544 0.98

9 9 7.1e-06 0.00067 20.2 5.5 1 23 550 572 550 572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4e-06	0.00022	21.7	0.8	1	23	249	271	249	271	0.98
2	9	2.8e-09	2.6e-07	30.9	1.5	1	23	277	299	277	299	0.98
3	9	0.0018	0.17	12.6	0.9	1	23	305	327	305	327	0.97
4	9	4.5e-05	0.0042	17.7	0.7	2	23	411	432	410	432	0.96
5	9	1.6e-08	1.5e-06	28.5	0.9	1	23	438	460	438	460	0.98
6	9	0.00022	0.021	15.5	3.4	1	23	466	488	466	488	0.98
7	9	0.00028	0.026	15.1	7.6	1	23	494	516	494	516	0.98
8	9	2.6e-05	0.0024	18.4	7.7	1	23	522	544	522	544	0.98
9	9	7.1e-06	0.00067	20.2	5.5	1	23	550	572	550	572	0.98

Sequence Information

Coding Sequence: ATGGCCATCAATTTCTCAACTGCATCGTTTGCAGCATGTTTAGCAGCTGGGCTAAAAGTCCCTCGCCACGTTATGTACTGCATAGCTCAAGatACAGGGACCCCTTATGTGATTTACAATAAAGATGGACTACAACCTAACGGACAGCCTGGACATCAGTGGACTGCAGGTGCAACACATAATCAAACTGGATATGCCATCATAGCTCCTCAGCAGCAACATTTCCAGCAAGTTCAACTACAACAAATGCCACCTCAAACACAAGTCCAGGCTGTCCaaactcaaaataatattgtcgcAACAGTATCCCAAAGTTCCTTATCGACTAGTCCTCAAGATAACGCCAGTAGTACGTCATCGAAAGAGAACACTCCAGGCCAGTCCGAACACCCTCAACATCCAAGTTCAATGACGAGTCCTAACCATTCATCTTCTCAACAACAGAATGTCCAGCACAGACCAGATGGTGAAAATCAACAAACCTCTCCCACCACAACGAACAACACAAACACCACAAATTCATCAACTAAACAATATAGTACGTCTGAAATGTATTACAACTCTTCGAAAAATTCTCAGACCACCAACACGAATATGTTAAGTCCAACAAGTTTTATGACATATCTAAAACAACCTGGCGTAATGTTAACATCTATCAACGCTTCAGAAATAACATCTAATGAATGTGTGCCAAACATGCCTGATCTCATAAATCCAAACAACAGTCGAACGTTGAATCGACAATTCAAATGTTTAACATGTGGAAAAGATTTTCGACAAAAAGCAACTCTTATTCAACATGAAAGAATACATACAAATAGTCGACCATATCCTTGTAATGAATGTGGAAAAAGATTTCGTCAACAAAGTCATCTTATACAACATATACGAATCCATTCCAATGAGAAACCCTTTAACTGTATGTATTGTGAATCATCGTTCAGACAAAAAGCAATTTTAAATCAACATTTACGTGTTCATTCCGATATTGCCCCCAACATTGTGTTCAACAAAAAGAATGGCCAAGGAACAGTTTGGAACCAAGATCAAAATTGTTCCTATCCTCAACGAGATGGAGAAGGAACAGATTATAGTACTGAAAACAATGCAACCTTTCCAGCATATTTTAAAGACTCGAAAGGAAACGTGCATGGAATTTTCAACACGGATGGAAAATGTCTGCCAGATGTGATTCAAAATGGAAAATCCACCGGCCTGCCATTATACGTGAGATGTCCAATATGCGAGGaagaatttaaacaaaaatccacGCTACTTCAACATGGCTGTGTTCATATACAATCTAGgcCTTATCCATGCGGAGATTGTGGGAGGAGGTTTCGACAGCAGAGTCACCTTGTACAGCACATCCGAATTCATACGAATGAGAAACCTTACACCTGTGTATATTGTGGAAGACATTTCCGTCAGAGAACCATATTGAACCAACACACAAGGATACATACTGGAGAAAAGCCACATAAATGTAGTCATTGCGGAAAATGCTTCCGTCAAAAACCAATTTTATTCCAACATTTACGTATACACTCAGGCGAGAAACCTCACCAATGTAACCATTGCGAGAAACGTTTTCGACAGCAAACCAATCTCGACCATCATGTTCGAATTCATACAGGCGAGAAACCTCACCAATGTAACCATTGCGAAAAACGTTTTCGACAGCAAACCAATCTAGACCAGCATGTTCGAATTCATACAGGTATGTAA
Protein Sequence: MAINFSTASFAACLAAGLKVPRHVMYCIAQDTGTPYVIYNKDGLQPNGQPGHQWTAGATHNQTGYAIIAPQQQHFQQVQLQQMPPQTQVQAVQTQNNIVATVSQSSLSTSPQDNASSTSSKENTPGQSEHPQHPSSMTSPNHSSSQQQNVQHRPDGENQQTSPTTTNNTNTTNSSTKQYSTSEMYYNSSKNSQTTNTNMLSPTSFMTYLKQPGVMLTSINASEITSNECVPNMPDLINPNNSRTLNRQFKCLTCGKDFRQKATLIQHERIHTNSRPYPCNECGKRFRQQSHLIQHIRIHSNEKPFNCMYCESSFRQKAILNQHLRVHSDIAPNIVFNKKNGQGTVWNQDQNCSYPQRDGEGTDYSTENNATFPAYFKDSKGNVHGIFNTDGKCLPDVIQNGKSTGLPLYVRCPICEEEFKQKSTLLQHGCVHIQSRPYPCGDCGRRFRQQSHLVQHIRIHTNEKPYTCVYCGRHFRQRTILNQHTRIHTGEKPHKCSHCGKCFRQKPILFQHLRIHSGEKPHQCNHCEKRFRQQTNLDHHVRIHTGEKPHQCNHCEKRFRQQTNLDQHVRIHTGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -