Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022874.1:39716407-39719499[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.46 43 5.0 3.1 1 23 6 29 6 29 0.93

2 22 5.8e-07 5.5e-05 23.6 3.3 1 23 92 115 92 115 0.93

3 22 1.6e-05 0.0015 19.0 2.4 1 23 121 143 121 143 0.98

4 22 0.00048 0.045 14.4 0.9 1 23 149 172 149 172 0.92

5 22 0.0068 0.64 10.8 0.1 2 23 178 199 177 199 0.97

6 22 0.24 22 5.9 2.8 1 23 204 227 204 227 0.96

7 22 0.067 6.2 7.7 0.4 1 14 259 272 259 282 0.79

8 22 0.18 17 6.3 1.6 1 23 288 310 288 310 0.90

9 22 0.087 8.2 7.3 2.4 2 21 315 334 314 335 0.93

10 22 0.0033 0.31 11.8 1.2 1 21 338 358 338 359 0.95

11 22 0.0015 0.14 12.9 1.3 2 23 377 398 376 398 0.94

12 22 0.0013 0.12 13.0 2.5 1 23 405 427 405 427 0.98

13 22 1.8e-05 0.0017 18.9 1.9 1 23 433 455 433 455 0.98

14 22 0.0098 0.92 10.3 0.8 1 20 460 479 460 482 0.94

15 22 2.8e-05 0.0026 18.3 4.5 1 23 487 509 487 509 0.96

16 22 2.8e-05 0.0026 18.3 4.7 1 23 515 537 515 537 0.97

17 22 0.0041 0.38 11.5 5.9 1 23 543 565 543 565 0.97

18 22 0.045 4.2 8.2 4.1 1 23 571 593 571 593 0.97

19 22 0.00011 0.01 16.4 1.3 1 23 600 623 600 623 0.97

20 22 0.0046 0.43 11.3 2.6 1 23 626 649 626 649 0.93

21 22 0.02 1.9 9.3 4.9 1 23 662 685 662 685 0.96

22 22 4.7e-05 0.0044 17.6 3.3 1 23 694 716 694 716 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.46	43	5.0	3.1	1	23	6	29	6	29	0.93
2	22	5.8e-07	5.5e-05	23.6	3.3	1	23	92	115	92	115	0.93
3	22	1.6e-05	0.0015	19.0	2.4	1	23	121	143	121	143	0.98
4	22	0.00048	0.045	14.4	0.9	1	23	149	172	149	172	0.92
5	22	0.0068	0.64	10.8	0.1	2	23	178	199	177	199	0.97
6	22	0.24	22	5.9	2.8	1	23	204	227	204	227	0.96
7	22	0.067	6.2	7.7	0.4	1	14	259	272	259	282	0.79
8	22	0.18	17	6.3	1.6	1	23	288	310	288	310	0.90
9	22	0.087	8.2	7.3	2.4	2	21	315	334	314	335	0.93
10	22	0.0033	0.31	11.8	1.2	1	21	338	358	338	359	0.95
11	22	0.0015	0.14	12.9	1.3	2	23	377	398	376	398	0.94
12	22	0.0013	0.12	13.0	2.5	1	23	405	427	405	427	0.98
13	22	1.8e-05	0.0017	18.9	1.9	1	23	433	455	433	455	0.98
14	22	0.0098	0.92	10.3	0.8	1	20	460	479	460	482	0.94
15	22	2.8e-05	0.0026	18.3	4.5	1	23	487	509	487	509	0.96
16	22	2.8e-05	0.0026	18.3	4.7	1	23	515	537	515	537	0.97
17	22	0.0041	0.38	11.5	5.9	1	23	543	565	543	565	0.97
18	22	0.045	4.2	8.2	4.1	1	23	571	593	571	593	0.97
19	22	0.00011	0.01	16.4	1.3	1	23	600	623	600	623	0.97
20	22	0.0046	0.43	11.3	2.6	1	23	626	649	626	649	0.93
21	22	0.02	1.9	9.3	4.9	1	23	662	685	662	685	0.96
22	22	4.7e-05	0.0044	17.6	3.3	1	23	694	716	694	716	0.98

Sequence Information

Coding Sequence: atgACGTTAAAAGTATACAATTGCCATCACTGCCAAGCTGCATTCGCTTTAAAACAATCCATCATAGAGCATGTTCACTCTCAGCATTTTATTAAAAGAccgaaaattgaagaaaaacctTTAGTGGATACAAGGAATGGAGTTTTTATAATTAAGACTGAATTCGACCAAGCCAGGGATATGACTGCAAGTATTCTTTCATATAGGAGACAGTgggaacaacaacaacagcaacatatTCCTGATCAAGGTAAACCTATCgaagaaagaaaattcaagTGTACTATGTGTAATAAATCATTTGACCACAAATCTAACTTGAGAAGACATTTGGCAGGCACACACAGTATCAGTAAGAAATATAAGTGTAAGTTGTGCTCCAAGATTTACCGGTATAAGTGGAACTTGAAGGCACATCTCAAACAACATAAAGgaccgaaaatattttcttgttttcattGTGACAAATCTTTTGCCATTAAACTTAACCTTGCCAAACATGTTAGTGCGGTTCATAATGATGATGGTAAAAGGTGTCCCATATGTCTTGAGAAATTCGAAATCAAAGACGAACTAGCCGAGCATGtcaaatctcatcaaaatagaaaattcaaatgcTGTGCGTGTGAACGAATCTTTACGTCAGAAACTCGTATGAGAACTCACATTGATATGaaacattttgatgaaactcttTATAAGTGTAAAAAGTGTATGAAAGTATTTCTGGATGAAACCAAATATCATCTTCATTGTAAAACACACGAAAAGTATTTCCGTTGTAGTGAATGTGAGAAACGATTTGCCACTGAAACTATTGTGCGACAACATTTTGCCAATGTTCACGAACAAGATGAGGTTTATATTTGTAATTACTGTTACGATTCGTTTAAGAATAAATCTACCATTGTTGATCATTTCTATGAACATGGTAATCCGTTAATGTGTAATCATTGTTTTCTCTTATTTAGTGATGAGAAAGCATTGCGTACACATCAATGTAGTTCTTGTTTTACATGTCCATTCTGTAGcaggaaatataaaattgaaaaacatttagAGAAACACATCGAGTCTTGTATCAACACAACAAGTCATCCTCCTTCTAACATTATGAAGGCACTTCAAAAGTGTAACTTTTGTCAACGTATGTTCCGTAacgaagataaattaaaattacacgAAGCACTTCACACCAAAGAGAAAACACTTTACAAATGTTTATTCtgttataaaattttcaagaaactcATTTCGTTTGAGAAACATATGAGCATACATGAAACACTCAATGTGTTTAAATGTCATTTATGTAACAGAGGCTATCCAACAGAGAAAAATCTCGAACGTCATTTGTTATCACACGataagaaaaatttcaaatgtcgaAGTTGCAATAAAAAGTTTGACAATGAAGAATTGTTACTTGAACATCTTCCTCAACATGAAAGACGTGTTCATAAATGTACACAATGTACAgagacatttaaaaataaaaagaatttaaaacaaCATCTTTTGGCGcatgaaaaagtgaaaatctttCATTGTCCAAAATGTCCAAAGCTATTTCGTCACGAAAGCCATCTTCAAAATCATATTATTGTTCACGATGAAAGTGACGTTCACAAATGTTTGtactgttttaaaatatttgtacacaAAGCTCATTTGGACAAACATTTAATACTTCACGAAACAAATGAAATGCATAACTGTAACTATTGTACTTTAACATTCCCAAATGAATTAGAATGTATTCGACATATGCGTTCGCATGAAGAATACTATATGAAACATAAGTGTGATATttgtaatgaaatatttaacaaCGATTCACGATTAAAATCTCATATTCGtaatatacataatatttttacgTGTATCCACTGTAATGAaacatttacaaataaaaaagatttctcaTCGCATTTATTACTTATTCATAACATTGATGATGCATCTGGAGGATTAACAAGTATGCACAAATGTGATCaatgtatgaaaatattttcaacagaaATACATTTACGaaatcataagaaatacattcaTGATCAAATACATTTGATTAAACCATATTCATGTCATTTATGTTCAAAAACGTTTGCATTTCAAAGTTTACTCAGTACACATATTCAATATCATTATACTGGTAATCATTATGAATCAGAAAGTAATCATAGTTTTATACATGAATCAAGTAACCAATCTTCATTTGTATATAATGATGATGCGAGTAGTTATTCACATacaaaacaagaagaagatagtCGAGATACATATATTATGGATGAAACAAATGATACACTTAATATGTATAAACATGAAGATAGCTATTTAGAAGAGAGCACATTGGATTCTACTCATACACttggaaataattattcaaaattgaacaaTGAGGAAGAATCTATACATCATCGTATTTGTTCCAATGAAATTCTTACTATTGATTATAGCAAAGAACAAGATAAACCTATTAGTACATCAAATGCAATTCTGccaattaattataataacaaAGATGAAAATGACGATGTAGATATGGTAGACACTATAAGTACAAGTAATACTATACAACCAATTGATTACAATAAAGATGAACTAAAAATAGACGAGAGCGAAACAAATGGATGTATAGAACAAGATATAAATGAAGGAAATGACGTCATTAATAATTCTATTGAATCTTTAATTAATTATACAGATGATACAAATGTAGATCTGATGACGTCATctaattttgaaacaaatacaaattattataatgggGATGAAACAACGAATGAACCTTATGAAGAATTGCAAGAAGAAGATATTACAAATCATCttcatgaaattcaaaatgaagaTGCACAGAATCATTTAATGGAAATCAAACAATATCATTTACAAGTACATAACGAAATTAATACTTTGACAAATGGGAATTATAATAATACGTTTGAGAATATTATTGGAAAGAAAGTTGAGAATAGTATATTGGAAGTAACTAATAATCAGATTGAAAAagagaatgaagaaaatatttgtaaGGGAGAAGTAGAAGATGTTGGAGAAAATAAAACGATGAGTGTGGTTGAAATATGA
Protein Sequence: MTLKVYNCHHCQAAFALKQSIIEHVHSQHFIKRPKIEEKPLVDTRNGVFIIKTEFDQARDMTASILSYRRQWEQQQQQHIPDQGKPIEERKFKCTMCNKSFDHKSNLRRHLAGTHSISKKYKCKLCSKIYRYKWNLKAHLKQHKGPKIFSCFHCDKSFAIKLNLAKHVSAVHNDDGKRCPICLEKFEIKDELAEHVKSHQNRKFKCCACERIFTSETRMRTHIDMKHFDETLYKCKKCMKVFLDETKYHLHCKTHEKYFRCSECEKRFATETIVRQHFANVHEQDEVYICNYCYDSFKNKSTIVDHFYEHGNPLMCNHCFLLFSDEKALRTHQCSSCFTCPFCSRKYKIEKHLEKHIESCINTTSHPPSNIMKALQKCNFCQRMFRNEDKLKLHEALHTKEKTLYKCLFCYKIFKKLISFEKHMSIHETLNVFKCHLCNRGYPTEKNLERHLLSHDKKNFKCRSCNKKFDNEELLLEHLPQHERRVHKCTQCTETFKNKKNLKQHLLAHEKVKIFHCPKCPKLFRHESHLQNHIIVHDESDVHKCLYCFKIFVHKAHLDKHLILHETNEMHNCNYCTLTFPNELECIRHMRSHEEYYMKHKCDICNEIFNNDSRLKSHIRNIHNIFTCIHCNETFTNKKDFSSHLLLIHNIDDASGGLTSMHKCDQCMKIFSTEIHLRNHKKYIHDQIHLIKPYSCHLCSKTFAFQSLLSTHIQYHYTGNHYESESNHSFIHESSNQSSFVYNDDASSYSHTKQEEDSRDTYIMDETNDTLNMYKHEDSYLEESTLDSTHTLGNNYSKLNNEEESIHHRICSNEILTIDYSKEQDKPISTSNAILPINYNNKDENDDVDMVDTISTSNTIQPIDYNKDELKIDESETNGCIEQDINEGNDVINNSIESLINYTDDTNVDLMTSSNFETNTNYYNGDETTNEPYEELQEEDITNHLHEIQNEDAQNHLMEIKQYHLQVHNEINTLTNGNYNNTFENIIGKKVENSILEVTNNQIEKENEENICKGEVEDVGENKTMSVVEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -