Pven004596.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- ZEB2
- Assembly
- GCA_012654025.1
- Location
- CM022878.1:2208745-2211153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.23 22 6.0 8.2 1 23 9 32 9 32 0.97 2 19 3.8 3.5e+02 2.2 0.2 10 23 53 67 43 67 0.77 3 19 4.3 4e+02 2.0 0.5 2 9 89 96 88 97 0.86 4 19 0.13 12 6.8 0.0 2 23 119 141 118 141 0.92 5 19 0.99 92 4.0 6.2 1 23 235 258 235 258 0.92 6 19 0.0077 0.72 10.6 0.2 1 23 317 340 317 340 0.98 7 19 1.9e-05 0.0018 18.8 1.0 1 23 346 369 346 369 0.96 8 19 9.7e-06 0.0009 19.8 1.6 1 23 385 408 385 408 0.97 9 19 2.5e-05 0.0024 18.4 0.2 1 23 439 462 439 462 0.98 10 19 0.00037 0.034 14.8 2.1 1 23 468 491 468 491 0.98 11 19 6.8e-06 0.00063 20.2 1.6 1 23 529 551 529 551 0.97 12 19 0.033 3.1 8.6 3.7 1 23 559 582 559 582 0.90 13 19 0.00042 0.039 14.6 0.5 1 23 607 629 607 629 0.99 14 19 1.8e-05 0.0017 18.9 0.5 1 23 635 658 635 658 0.96 15 19 2.2e-08 2e-06 28.1 0.4 1 23 663 685 663 685 0.98 16 19 0.00025 0.023 15.3 2.4 1 23 691 713 691 713 0.95 17 19 0.00024 0.022 15.4 3.0 1 23 719 741 719 741 0.98 18 19 5.6e-05 0.0052 17.4 1.5 1 23 748 770 748 770 0.96 19 19 0.0026 0.24 12.1 2.8 1 23 776 798 776 798 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTCGATACTTATGGTACTTTTATGTGTTGCCACTGTCATCACGGCTCTGATGATAAGCACCAATTGGAAGTTCATATTAAAATTGAGCATGGTCAGATTGTGTATGGTGTGAGTGATTGGTATGCTTGTAAATTGTGTTTGAATGCGTTGTATAGTCGTAGTCAGGATATTGTAAAGCATATGCGTAATGTTCACAATATATTGCCTCCTGTTCAGTCTGACGAGTACTTGGTCAAATCAATCACTGATGTCAATATCCCTTGCCATGTCTGTGGTAAAAAAAGTTTGTTATCTAAATTTTGTACAGCTCATCTGGATAGTTTAGTTGTCACAAGAAAACTTGACATCCCGTGTGAGTTGTGCCATGAATCTTTCCCAGATGACGGCATTCTTGAGGCGCACGTTAATATCTCTCATGGAAAAATGATCCACAACAATCCTGATTTCAAATGTTACATGTGTAACATTTGTCGCGACCAACTTTACATCAAGGGTGACACCTTGGCAACACATCTACAAGAGCTTCACAAAGACTTTCGGTTTGATGAAAGTGCTCTCGAGGAATTTGTTATAGAATCTCTGGATGACATTTTAAAATCGTGTGGTTTGTGTGGAGAAAGAagtcttttttcaatgttttgtaGCCAGCACGATGCAAAGATAGTCATTTTGAATTGTAATAAACATGAAAAGCGTCACATTTGTAAACATTGTGAGGGTGATTTTAAGAATTGTAAGGATTTATGGGATCACAAATTTTCATCACATGCGAAAGATAAACTCGTTTGTAATCTTTGTGATGAATCAAAGGTCACTGTCATAAAGTGTCCGAGCAATTTCATGGGACACTGTCGGAAAGTTCATCGTAATGCCCAATTTTGGGATGAAGCTAATTTGcttgaaaaatcaaaagttgttaACGAAGATAATGATTGGATCAAATATCAATGTCCCGAATGCAGTTCGTTGTATGAAGATTTCAACGATTTGAAAGTGCACTTGAAATCTGAACATGATTTAATCAATAAATTTGTTTGTAGTGTTTGTTCGAAATCTTTCAGACTTTCTAAAAATTTGCGTGATCATGAGAGAAATGTACACAAGATGAGTCCAACTGACTCATCACAGACGGATGTGATCAACAAGTATGTCTGtaatatttgttcaaaatcaTTTCGACTACCAAAACATTTGCGTGATCACGAGCGAAATGTTCATAAAATGTATAGTCGAACGCGCAAATCCCAGACAGCTGTCAATGAAGTTCTTAAGAAGAAGTATATGGTTGTGCACgagggaaaaatcaaatttaaatgcaCCGAATGTGATAAAATAGTGTCACGACTACAAACTCTCAAAGAGCACATAGCCACCGTGCACGAAGATGTTAAAGATTATGTTTGTTCTACTTGTGGGAAAGGTTTTTCAGCACACAGAAGATTGACAGAacatattaaaagaaaacattcaCCACTGGTTGCCACCAAAGAAGAGGCCCTCCTAGAAAAGAGTGGTGTCGAGTTCTCTCTGAATGTTGAGAAGGATCAAATGCAAGTTGTTTTCGATGGagaattgaaatataaatgtcCAATCTGTGACAAAATCTATTCGCGCTTTTTTGAACTAAAACATCATTTGGTTGTCCACAGtggagaagaaaacaaaaactttgCTTGCACCAATTGTGATAAAACATTTTTCTGGAAAAGTGATCTCACAACGCACTGCAAGCGAGCACATCAAATCAAAGTTGTTCGAGAAGTGAACGAACTCAGACAGAAAACTGAACTAACCATTGACGGTGTGACCAAGTATAAGTGTCCTCAGTGTCCTTCCATATCTTCAAGATTTGATACTTTAAGAAATCATTTGAAGGTTCATACGGGAGAGAAACCATTTTCTTGTGAAATGTGTGGAAAATCATTTGCGGTCAAAAGACGTTTGACACGACATGTCAGTAGTATTCACATGGGCATACATTTTCAATGTAATATTTGTGGACGCGTGTTGACTGATAGTTCCAATTTGAAAGTTCATATGCGGAATCATACGGGAGAGAAAAAGTATGTCTGTGAAGTCTGTGGGAAAAGTTTCAATCAGTGGTCGTCCCATTACTATCATATGTTCAGTCATAGCAAAGAACGAACATTTCAATGTCCCCATTGTGATTTGAAATATAATAGTCCAAAGACATTGTACGAACATAAAAAGTCACATGCTTCAACAGACGTTAAGCATTTTTGTGACGTGTGTGGCGCTGATTTTAGAACAAGAAAAAATTTAGCGAGTCATAAACGAATTCACACTGTGGGTAAACCTCATGTTTGTGAAATGTGTAATGCTcgttttaaaattagaaaatatcttGTACAACATTATAAAACGCATTCTAAAAAACAGTGA
- Protein Sequence
- MEVDTYGTFMCCHCHHGSDDKHQLEVHIKIEHGQIVYGVSDWYACKLCLNALYSRSQDIVKHMRNVHNILPPVQSDEYLVKSITDVNIPCHVCGKKSLLSKFCTAHLDSLVVTRKLDIPCELCHESFPDDGILEAHVNISHGKMIHNNPDFKCYMCNICRDQLYIKGDTLATHLQELHKDFRFDESALEEFVIESLDDILKSCGLCGERSLFSMFCSQHDAKIVILNCNKHEKRHICKHCEGDFKNCKDLWDHKFSSHAKDKLVCNLCDESKVTVIKCPSNFMGHCRKVHRNAQFWDEANLLEKSKVVNEDNDWIKYQCPECSSLYEDFNDLKVHLKSEHDLINKFVCSVCSKSFRLSKNLRDHERNVHKMSPTDSSQTDVINKYVCNICSKSFRLPKHLRDHERNVHKMYSRTRKSQTAVNEVLKKKYMVVHEGKIKFKCTECDKIVSRLQTLKEHIATVHEDVKDYVCSTCGKGFSAHRRLTEHIKRKHSPLVATKEEALLEKSGVEFSLNVEKDQMQVVFDGELKYKCPICDKIYSRFFELKHHLVVHSGEENKNFACTNCDKTFFWKSDLTTHCKRAHQIKVVREVNELRQKTELTIDGVTKYKCPQCPSISSRFDTLRNHLKVHTGEKPFSCEMCGKSFAVKRRLTRHVSSIHMGIHFQCNICGRVLTDSSNLKVHMRNHTGEKKYVCEVCGKSFNQWSSHYYHMFSHSKERTFQCPHCDLKYNSPKTLYEHKKSHASTDVKHFCDVCGADFRTRKNLASHKRIHTVGKPHVCEMCNARFKIRKYLVQHYKTHSKKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -